Wall clock time and date at job start Wed Apr 1 2020 04:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47206 * 335.59173 * 3 2 1 5 5 C 1.37092 * 120.00188 * 268.16985 * 4 3 2 6 6 H 1.08002 * 120.00215 * 194.14968 * 5 4 3 7 7 C 1.38950 * 120.00124 * 14.15238 * 5 4 3 8 8 N 1.31412 * 119.99564 * 23.97510 * 7 5 4 9 9 Si 1.86796 * 120.00282 * 203.96960 * 7 5 4 10 10 H 1.48503 * 109.46898 * 60.00319 * 9 7 5 11 11 H 1.48498 * 109.47119 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47434 * 299.99948 * 9 7 5 13 13 C 1.34779 * 119.99790 * 88.17305 * 4 3 2 14 14 O 1.21299 * 119.99640 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00326 * 0.27001 * 13 4 3 16 16 F 1.39897 * 109.47017 * 324.73126 * 15 13 4 17 17 F 1.39909 * 109.46897 * 84.72556 * 15 13 4 18 18 N 1.46495 * 109.47436 * 204.72339 * 15 13 4 19 19 C 1.35212 * 125.75210 * 179.71548 * 18 15 13 20 20 C 1.36484 * 106.04473 * 179.85280 * 19 18 15 21 21 C 1.48447 * 126.90783 * 180.14374 * 20 19 18 22 22 C 1.39317 * 120.11463 * 0.02562 * 21 20 19 23 23 C 1.38024 * 119.87787 * 179.74466 * 22 21 20 24 24 C 1.38325 * 120.11867 * 0.55107 * 23 22 21 25 25 C 1.38321 * 120.23705 * 359.70670 * 24 23 22 26 26 C 1.38026 * 120.11856 * 0.02562 * 25 24 23 27 27 N 1.34505 * 106.19165 * 0.40741 * 20 19 18 28 28 N 1.28613 * 108.78118 * 359.74118 * 27 20 19 29 29 H 1.08997 * 109.47017 * 215.59082 * 3 2 1 30 30 H 1.08997 * 109.46704 * 95.59576 * 3 2 1 31 31 H 0.97003 * 120.00147 * 180.02562 * 8 7 5 32 32 H 1.08006 * 126.97549 * 0.02562 * 19 18 15 33 33 H 1.07993 * 120.06253 * 0.02719 * 22 21 20 34 34 H 1.07995 * 119.94226 * 180.30302 * 23 22 21 35 35 H 1.08001 * 119.87846 * 179.72155 * 24 23 22 36 36 H 1.07997 * 119.93533 * 180.02562 * 25 24 23 37 37 H 1.07999 * 120.05614 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0970 -1.2569 0.5708 5 6 3.3613 -1.3434 1.9132 6 1 3.9293 -2.1769 2.2991 7 6 2.8982 -0.3588 2.7773 8 7 1.8562 0.3698 2.4452 9 14 3.7568 -0.0708 4.4111 10 1 5.1730 0.3034 4.1669 11 1 3.0744 1.0269 5.1422 12 1 3.7060 -1.3132 5.2229 13 6 3.2870 -2.3287 -0.2240 14 8 3.6922 -3.3698 0.2486 15 6 3.0024 -2.2318 -1.7007 16 9 1.9029 -1.3924 -1.9095 17 9 4.1208 -1.7075 -2.3577 18 7 2.7061 -3.5655 -2.2294 19 6 2.3997 -3.8559 -3.5140 20 6 2.2046 -5.2060 -3.5593 21 6 1.8490 -6.0158 -4.7515 22 6 1.6806 -5.4001 -5.9898 23 6 1.3552 -6.1585 -7.0962 24 6 1.1850 -7.5259 -6.9747 25 6 1.3457 -8.1415 -5.7465 26 6 1.6765 -7.3933 -4.6348 27 7 2.3936 -5.6546 -2.3054 28 7 2.6880 -4.6571 -1.5487 29 1 2.9710 0.8365 0.5981 30 1 2.9713 0.1010 -1.0228 31 1 1.5331 1.0575 3.0483 32 1 2.3271 -3.1610 -4.3376 33 1 1.8090 -4.3321 -6.0849 34 1 1.2292 -5.6830 -8.0576 35 1 0.9259 -8.1149 -7.8421 36 1 1.2120 -9.2094 -5.6574 37 1 1.8022 -7.8750 -3.6764 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464719531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:35 Heat of formation + Delta-G solvation = 76.592080 kcal Electronic energy + Delta-G solvation = -29952.858816 eV Core-core repulsion = 25371.039270 eV Total energy + Delta-G solvation = -4581.819546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.58743 -47.60710 -43.17354 -39.16553 -38.97369 -36.23477 -34.67096 -34.07391 -32.56010 -32.27004 -31.08544 -29.54035 -27.94842 -27.72088 -25.16604 -23.86872 -23.22386 -21.98933 -21.33668 -20.02114 -18.98203 -18.37445 -18.24712 -17.54258 -16.83142 -16.52204 -15.84390 -15.74387 -15.70226 -15.32311 -14.82534 -14.59991 -14.51004 -14.13932 -14.03749 -13.88398 -13.64790 -13.55206 -13.50740 -13.07333 -13.01754 -12.57921 -12.21791 -11.87962 -11.82844 -11.51927 -11.40368 -11.33855 -11.25752 -10.87776 -10.84096 -10.76024 -10.63502 -10.60880 -9.90331 -9.61078 -9.14194 -9.09836 -8.49109 -8.39151 -6.88670 -4.35488 0.77879 1.25822 1.52424 1.58477 2.65613 2.67553 2.97272 3.07352 3.10367 3.22346 3.39097 3.69509 3.78864 3.86659 3.97683 4.11537 4.49329 4.51187 4.69006 4.73004 4.80676 4.81578 4.94690 4.99857 5.06270 5.24800 5.35092 5.55818 5.65501 5.70084 5.88724 5.93666 6.16281 6.17911 6.31279 6.37337 6.44541 6.79827 7.12342 7.29861 7.81606 8.47142 8.50921 8.62004 8.69848 9.11955 10.15125 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.023135 B = 0.002831 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.987543 B = 9888.058112 C =10366.433843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.248 3.752 3 C 0.209 3.791 4 N -0.397 5.397 5 C -0.317 4.317 6 H 0.122 0.878 7 C 0.040 3.960 8 N -0.853 5.853 9 Si 0.940 3.060 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.400 3.600 14 O -0.497 6.497 15 C 0.506 3.494 16 F -0.159 7.159 17 F -0.160 7.160 18 N -0.330 5.330 19 C -0.031 4.031 20 C 0.017 3.983 21 C 0.000 4.000 22 C -0.106 4.106 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.091 4.091 27 N -0.253 5.253 28 N 0.012 4.988 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.283 0.717 32 H 0.195 0.805 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 -3.978 -15.712 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.071 4.071 3 C 0.082 3.918 4 N -0.116 5.116 5 C -0.443 4.443 6 H 0.140 0.860 7 C -0.167 4.167 8 N -0.489 5.489 9 Si 0.765 3.235 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.181 3.819 14 O -0.375 6.375 15 C 0.385 3.615 16 F -0.140 7.140 17 F -0.141 7.141 18 N -0.130 5.130 19 C -0.179 4.179 20 C -0.117 4.117 21 C -0.002 4.002 22 C -0.125 4.125 23 C -0.137 4.137 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.110 4.110 27 N -0.123 5.123 28 N 0.032 4.968 29 H 0.151 0.849 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.212 0.788 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.854 -4.855 -13.956 14.801 hybrid contribution 0.414 1.236 -0.540 1.411 sum 1.268 -3.619 -14.496 14.995 Atomic orbital electron populations 1.80898 1.13196 1.07768 1.11885 1.28695 0.94852 0.93255 0.90281 1.19042 0.82717 0.90850 0.99169 1.43661 1.53147 1.06560 1.08245 1.19918 1.33337 1.11406 0.79612 0.86049 1.25487 0.94381 0.96142 1.00734 1.69870 1.18310 1.21594 1.39156 0.85758 0.79461 0.78654 0.79672 1.19079 1.20596 1.19208 1.19003 0.92590 0.86462 0.83841 1.90768 1.48925 1.26879 1.70969 1.21085 0.74019 0.73037 0.93404 1.93191 1.54718 1.70139 1.95930 1.93179 1.51749 1.85700 1.83441 1.47981 1.48288 1.09038 1.07719 1.23629 1.07322 0.98178 0.88724 1.20405 1.07153 0.90541 0.93588 1.17669 1.00455 0.92531 0.89557 1.21106 0.99811 0.99983 0.91612 1.21023 1.00296 0.94091 0.98318 1.21230 0.99981 0.94906 0.97628 1.21121 1.00016 1.00040 0.92567 1.21279 0.97513 0.92676 0.99488 1.75432 1.14930 1.21426 1.00539 1.79003 1.13628 0.85827 1.18325 0.84929 0.89417 0.90598 0.78760 0.85775 0.85707 0.86018 0.85684 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.77 18.54 42.16 0.78 -9.99 16 2 C 0.25 5.38 11.22 -20.76 -0.23 5.15 16 3 C 0.21 4.01 4.75 -6.83 -0.03 3.98 16 4 N -0.40 -8.90 2.59 -117.94 -0.31 -9.20 16 5 C -0.32 -7.57 9.36 -14.94 -0.14 -7.71 16 6 H 0.12 3.03 7.36 -52.49 -0.39 2.64 16 7 C 0.04 0.91 4.84 -17.47 -0.08 0.83 16 8 N -0.85 -19.86 9.32 55.50 0.52 -19.34 16 9 Si 0.94 17.95 29.62 -169.99 -5.03 12.91 16 10 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 11 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 12 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 13 C 0.40 8.99 7.05 -10.99 -0.08 8.91 16 14 O -0.50 -12.66 14.42 5.54 0.08 -12.58 16 15 C 0.51 9.51 2.05 -5.20 -0.01 9.50 16 16 F -0.16 -2.84 12.45 2.25 0.03 -2.81 16 17 F -0.16 -2.60 16.94 2.25 0.04 -2.57 16 18 N -0.33 -6.27 3.58 -60.72 -0.22 -6.49 16 19 C -0.03 -0.47 10.91 -16.70 -0.18 -0.65 16 20 C 0.02 0.26 6.99 -83.12 -0.58 -0.32 16 21 C 0.00 0.00 5.88 -104.89 -0.62 -0.62 16 22 C -0.11 -1.10 9.58 -39.26 -0.38 -1.47 16 23 C -0.12 -1.04 10.03 -39.63 -0.40 -1.44 16 24 C -0.12 -1.02 10.04 -39.52 -0.40 -1.42 16 25 C -0.12 -1.15 10.03 -39.63 -0.40 -1.55 16 26 C -0.09 -1.10 9.71 -39.26 -0.38 -1.48 16 27 N -0.25 -4.91 12.16 33.06 0.40 -4.51 16 28 N 0.01 0.26 10.63 60.35 0.64 0.91 16 29 H 0.13 2.46 6.56 -51.93 -0.34 2.12 16 30 H 0.09 1.36 6.00 -51.93 -0.31 1.04 16 31 H 0.28 6.32 8.31 -40.82 -0.34 5.98 16 32 H 0.20 2.07 7.41 -52.48 -0.39 1.68 16 33 H 0.12 1.03 7.12 -52.49 -0.37 0.66 16 34 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.13 1.66 7.90 -52.49 -0.41 1.24 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -30.16 338.83 -4.49 -34.64 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -2.62 Total: 2.21 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: -3.91 Total: 11.70 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 1.82 Total: -48.62 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.07 Total: -5.38 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.16 -4.49 -34.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464719531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.235 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds