Wall clock time and date at job start Wed Apr 1 2020 04:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47206 * 335.59173 * 3 2 1 5 5 C 1.37092 * 120.00188 * 268.16985 * 4 3 2 6 6 H 1.08002 * 120.00215 * 194.14968 * 5 4 3 7 7 C 1.38950 * 120.00124 * 14.15238 * 5 4 3 8 8 N 1.31412 * 119.99564 * 23.97510 * 7 5 4 9 9 Si 1.86796 * 120.00282 * 203.96960 * 7 5 4 10 10 H 1.48503 * 109.46898 * 60.00319 * 9 7 5 11 11 H 1.48498 * 109.47119 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47434 * 299.99948 * 9 7 5 13 13 C 1.34779 * 119.99790 * 88.17305 * 4 3 2 14 14 O 1.21299 * 119.99640 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00326 * 0.27001 * 13 4 3 16 16 F 1.39897 * 109.47017 * 324.73126 * 15 13 4 17 17 F 1.39909 * 109.46897 * 84.72556 * 15 13 4 18 18 N 1.46495 * 109.47436 * 204.72339 * 15 13 4 19 19 C 1.35212 * 125.75210 * 179.71548 * 18 15 13 20 20 C 1.36484 * 106.04473 * 179.85280 * 19 18 15 21 21 C 1.48447 * 126.90783 * 180.14374 * 20 19 18 22 22 C 1.39317 * 120.11463 * 0.02562 * 21 20 19 23 23 C 1.38024 * 119.87787 * 179.74466 * 22 21 20 24 24 C 1.38325 * 120.11867 * 0.55107 * 23 22 21 25 25 C 1.38321 * 120.23705 * 359.70670 * 24 23 22 26 26 C 1.38026 * 120.11856 * 0.02562 * 25 24 23 27 27 N 1.34505 * 106.19165 * 0.40741 * 20 19 18 28 28 N 1.28613 * 108.78118 * 359.74118 * 27 20 19 29 29 H 1.08997 * 109.47017 * 215.59082 * 3 2 1 30 30 H 1.08997 * 109.46704 * 95.59576 * 3 2 1 31 31 H 0.97003 * 120.00147 * 180.02562 * 8 7 5 32 32 H 1.08006 * 126.97549 * 0.02562 * 19 18 15 33 33 H 1.07993 * 120.06253 * 0.02719 * 22 21 20 34 34 H 1.07995 * 119.94226 * 180.30302 * 23 22 21 35 35 H 1.08001 * 119.87846 * 179.72155 * 24 23 22 36 36 H 1.07997 * 119.93533 * 180.02562 * 25 24 23 37 37 H 1.07999 * 120.05614 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0970 -1.2569 0.5708 5 6 3.3613 -1.3434 1.9132 6 1 3.9293 -2.1769 2.2991 7 6 2.8982 -0.3588 2.7773 8 7 1.8562 0.3698 2.4452 9 14 3.7568 -0.0708 4.4111 10 1 5.1730 0.3034 4.1669 11 1 3.0744 1.0269 5.1422 12 1 3.7060 -1.3132 5.2229 13 6 3.2870 -2.3287 -0.2240 14 8 3.6922 -3.3698 0.2486 15 6 3.0024 -2.2318 -1.7007 16 9 1.9029 -1.3924 -1.9095 17 9 4.1208 -1.7075 -2.3577 18 7 2.7061 -3.5655 -2.2294 19 6 2.3997 -3.8559 -3.5140 20 6 2.2046 -5.2060 -3.5593 21 6 1.8490 -6.0158 -4.7515 22 6 1.6806 -5.4001 -5.9898 23 6 1.3552 -6.1585 -7.0962 24 6 1.1850 -7.5259 -6.9747 25 6 1.3457 -8.1415 -5.7465 26 6 1.6765 -7.3933 -4.6348 27 7 2.3936 -5.6546 -2.3054 28 7 2.6880 -4.6571 -1.5487 29 1 2.9710 0.8365 0.5981 30 1 2.9713 0.1010 -1.0228 31 1 1.5331 1.0575 3.0483 32 1 2.3271 -3.1610 -4.3376 33 1 1.8090 -4.3321 -6.0849 34 1 1.2292 -5.6830 -8.0576 35 1 0.9259 -8.1149 -7.8421 36 1 1.2120 -9.2094 -5.6574 37 1 1.8022 -7.8750 -3.6764 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464719531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:35 Heat of formation + Delta-G solvation = 58.496805 kcal Electronic energy + Delta-G solvation = -29953.643486 eV Core-core repulsion = 25371.039270 eV Total energy + Delta-G solvation = -4582.604216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.05177 -49.04306 -44.52099 -40.75532 -39.89851 -37.97425 -36.42027 -35.47575 -34.05254 -33.66238 -31.84441 -30.63072 -29.57995 -29.25975 -26.82602 -24.98313 -24.38775 -23.14803 -22.41926 -21.44854 -20.38412 -20.02172 -19.78746 -18.98942 -18.23512 -17.76619 -17.45587 -17.15396 -16.71786 -16.46929 -16.19234 -16.08786 -15.78800 -15.68071 -15.33203 -15.25214 -15.18065 -14.71174 -14.62358 -14.28325 -14.16664 -13.92536 -13.87537 -13.57644 -13.27085 -13.06279 -12.97807 -12.51488 -12.45998 -12.31816 -12.16852 -12.13091 -12.11190 -11.83121 -11.33709 -11.09888 -10.89132 -10.26233 -9.84585 -9.35084 -8.64507 -6.19512 -0.18533 0.10640 0.31280 0.51173 0.99299 1.36334 1.52738 1.53744 1.55176 1.66229 1.83659 2.04937 2.21928 2.34053 2.77115 2.95023 2.97687 3.15083 3.20773 3.42564 3.44464 3.72114 4.00852 4.13043 4.18549 4.23214 4.30311 4.51011 4.62226 4.64984 4.75284 4.88380 5.05071 5.17395 5.31271 5.55714 5.56338 5.61633 5.62396 6.04199 6.07241 6.72749 6.88594 6.92688 7.11238 7.36569 8.38124 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.023135 B = 0.002831 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.987543 B = 9888.058112 C =10366.433843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.259 3.741 3 C 0.208 3.792 4 N -0.405 5.405 5 C -0.346 4.346 6 H 0.100 0.900 7 C 0.018 3.982 8 N -0.869 5.869 9 Si 1.001 2.999 10 H -0.254 1.254 11 H -0.274 1.274 12 H -0.279 1.279 13 C 0.389 3.611 14 O -0.537 6.537 15 C 0.523 3.477 16 F -0.151 7.151 17 F -0.141 7.141 18 N -0.339 5.339 19 C -0.019 4.019 20 C 0.016 3.984 21 C -0.032 4.032 22 C -0.105 4.105 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.124 4.124 26 C -0.112 4.112 27 N -0.275 5.275 28 N -0.048 5.048 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.287 0.713 32 H 0.244 0.756 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 -3.036 -18.652 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.059 4.059 3 C 0.082 3.918 4 N -0.123 5.123 5 C -0.472 4.472 6 H 0.118 0.882 7 C -0.188 4.188 8 N -0.505 5.505 9 Si 0.823 3.177 10 H -0.178 1.178 11 H -0.198 1.198 12 H -0.204 1.204 13 C 0.172 3.828 14 O -0.418 6.418 15 C 0.401 3.599 16 F -0.132 7.132 17 F -0.122 7.122 18 N -0.140 5.140 19 C -0.167 4.167 20 C -0.118 4.118 21 C -0.034 4.034 22 C -0.124 4.124 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.141 4.141 26 C -0.131 4.131 27 N -0.144 5.144 28 N -0.027 5.027 29 H 0.159 0.841 30 H 0.147 0.853 31 H 0.098 0.902 32 H 0.260 0.740 33 H 0.164 0.836 34 H 0.176 0.824 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.846 -3.899 -16.905 17.370 hybrid contribution 0.361 0.842 0.223 0.943 sum 1.207 -3.057 -16.682 17.003 Atomic orbital electron populations 1.80896 1.14326 1.08899 1.13197 1.29157 0.95348 0.92187 0.89181 1.19384 0.81217 0.89709 1.01502 1.43834 1.52784 1.07585 1.08071 1.19875 1.34598 1.11824 0.80930 0.88226 1.26151 0.94298 0.95154 1.03195 1.69919 1.18664 1.21702 1.40219 0.84875 0.79113 0.77941 0.75809 1.17766 1.19847 1.20432 1.19519 0.91836 0.85931 0.85558 1.90740 1.50214 1.28248 1.72600 1.20169 0.74648 0.73597 0.91491 1.93207 1.54423 1.69856 1.95763 1.93217 1.50796 1.85398 1.82762 1.47975 1.48741 1.08376 1.08922 1.24411 1.05286 0.98745 0.88212 1.20999 1.06135 0.91381 0.93316 1.17809 1.03208 0.92729 0.89626 1.21402 0.98911 1.01340 0.90750 1.21456 0.98759 0.94188 0.99080 1.21676 0.97921 0.95372 0.97966 1.21377 0.99449 1.01002 0.92307 1.21313 0.98997 0.92966 0.99859 1.75357 1.15221 1.21551 1.02300 1.79011 1.16867 0.86927 1.19927 0.84129 0.85310 0.90247 0.74033 0.83573 0.82427 0.82851 0.83766 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -23.07 18.54 20.01 0.37 -22.70 16 2 C 0.26 11.11 11.22 89.44 1.00 12.11 16 3 C 0.21 7.76 4.75 84.57 0.40 8.17 16 4 N -0.40 -18.29 2.59 -645.43 -1.67 -19.96 16 5 C -0.35 -16.92 9.36 84.04 0.79 -16.14 16 6 H 0.10 5.22 7.36 -2.91 -0.02 5.20 16 7 C 0.02 0.83 4.84 84.93 0.41 1.24 16 8 N -0.87 -40.10 9.32 21.66 0.20 -39.90 16 9 Si 1.00 36.57 29.62 68.60 2.03 38.60 16 10 H -0.25 -8.74 7.11 99.48 0.71 -8.04 16 11 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 12 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 13 C 0.39 17.85 7.05 87.66 0.62 18.46 16 14 O -0.54 -28.68 14.42 -3.09 -0.04 -28.72 16 15 C 0.52 19.34 2.05 85.63 0.18 19.51 16 16 F -0.15 -5.21 12.45 44.97 0.56 -4.65 16 17 F -0.14 -4.35 16.94 44.97 0.76 -3.58 16 18 N -0.34 -12.92 3.58 -346.01 -1.24 -14.16 16 19 C -0.02 -0.56 10.91 83.76 0.91 0.35 16 20 C 0.02 0.51 6.99 41.05 0.29 0.80 16 21 C -0.03 -0.80 5.88 -20.04 -0.12 -0.92 16 22 C -0.11 -1.87 9.58 22.48 0.22 -1.65 16 23 C -0.12 -1.57 10.03 22.24 0.22 -1.35 16 24 C -0.11 -1.50 10.04 22.31 0.22 -1.27 16 25 C -0.12 -2.16 10.03 22.24 0.22 -1.93 16 26 C -0.11 -2.73 9.71 22.48 0.22 -2.52 16 27 N -0.27 -11.17 12.16 -49.31 -0.60 -11.77 16 28 N -0.05 -2.18 10.63 37.02 0.39 -1.79 16 29 H 0.14 5.06 6.56 -2.39 -0.02 5.04 16 30 H 0.13 3.70 6.00 -2.39 -0.01 3.68 16 31 H 0.29 12.57 8.31 -92.71 -0.77 11.80 16 32 H 0.24 4.25 7.41 -2.91 -0.02 4.23 16 33 H 0.15 1.83 7.12 -2.91 -0.02 1.81 16 34 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.11 3.08 7.90 -2.91 -0.02 3.06 16 Total: -1.00 -69.40 338.83 7.51 -61.89 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.16 Total: 11.87 kcal Atomic # 6 Polarization: 29.28 SS G_CDS: 5.58 Total: 34.87 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -2.54 Total: -110.27 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.04 Total: -28.72 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 1.32 Total: -8.23 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -69.40 7.51 -61.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464719531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.388 kcal (2) G-P(sol) polarization free energy of solvation -69.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds