Wall clock time and date at job start Wed Apr 1 2020 03:59:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.38881 * 119.99935 * 2 1
4 4 C 1.38954 * 120.17408 * 354.46407 * 3 2 1
5 5 C 1.37956 * 120.06391 * 179.97438 * 4 3 2
6 6 C 1.38614 * 120.41936 * 359.97438 * 5 4 3
7 7 N 1.48023 * 119.82090 * 180.02562 * 6 5 4
8 8 O 1.21806 * 120.00330 * 0.02562 * 7 6 5
9 9 O 1.21801 * 119.99789 * 180.02562 * 7 6 5
10 10 C 1.37742 * 120.35715 * 359.78616 * 6 5 4
11 11 C 1.39745 * 119.92168 * 0.44456 * 10 6 5
12 12 C 1.47436 * 120.20514 * 179.81023 * 11 10 6
13 13 O 1.21594 * 120.00253 * 185.99122 * 12 11 10
14 14 N 1.34781 * 120.00012 * 5.99316 * 12 11 10
15 15 C 1.46501 * 119.99788 * 180.02562 * 14 12 11
16 16 H 1.08994 * 109.46764 * 324.99532 * 15 14 12
17 17 C 1.50703 * 109.46611 * 204.99855 * 15 14 12
18 18 H 1.08001 * 120.00030 * 274.79676 * 17 15 14
19 19 C 1.37875 * 120.00164 * 94.80508 * 17 15 14
20 20 N 1.31512 * 120.00289 * 184.70942 * 19 17 15
21 21 Si 1.86799 * 120.00025 * 4.71356 * 19 17 15
22 22 H 1.48498 * 109.47331 * 94.67083 * 21 19 17
23 23 H 1.48497 * 109.47077 * 214.67330 * 21 19 17
24 24 H 1.48508 * 109.47028 * 334.67324 * 21 19 17
25 25 C 1.53000 * 109.47302 * 84.99974 * 15 14 12
26 26 F 1.39895 * 109.47299 * 54.94456 * 25 15 14
27 27 F 1.39897 * 109.46983 * 294.94748 * 25 15 14
28 28 F 1.39897 * 109.47164 * 174.94892 * 25 15 14
29 29 H 1.09003 * 109.46810 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47369 * 299.99806 * 1 2 3
31 31 H 1.09004 * 109.47079 * 59.99573 * 1 2 3
32 32 H 0.96996 * 120.00300 * 180.02562 * 2 1 3
33 33 H 1.07997 * 119.96994 * 359.97438 * 4 3 2
34 34 H 1.07996 * 119.78831 * 180.02562 * 5 4 3
35 35 H 1.08001 * 120.04113 * 180.25723 * 10 6 5
36 36 H 0.97002 * 119.99975 * 359.97438 * 14 12 11
37 37 H 0.96999 * 119.99971 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1594 1.2028 0.0000
4 6 1.4731 2.4054 -0.1159
5 6 2.1651 3.5989 -0.1151
6 6 3.5463 3.6092 0.0014
7 7 4.2754 4.8974 0.0013
8 8 3.6617 5.9446 -0.1005
9 8 5.4891 4.9102 0.1031
10 6 4.2436 2.4275 0.1222
11 6 3.5577 1.2099 0.1182
12 6 4.2982 -0.0589 0.2429
13 8 3.7124 -1.1184 0.1300
14 7 5.6245 -0.0444 0.4822
15 6 6.3604 -1.3052 0.6056
16 1 5.7258 -2.0508 1.0846
17 6 7.5959 -1.0861 1.4401
18 1 8.5029 -0.7254 0.9778
19 6 7.5685 -1.3461 2.7938
20 7 8.6164 -1.0678 3.5383
21 14 6.0431 -2.0939 3.5706
22 1 6.1969 -3.5691 3.6430
23 1 5.8661 -1.5469 4.9398
24 1 4.8537 -1.7601 2.7465
25 6 6.7651 -1.7978 -0.7853
26 9 7.4827 -0.7942 -1.4448
27 9 5.6174 -2.1108 -1.5214
28 9 7.5652 -2.9386 -0.6615
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.9500 -0.8400 -0.0004
33 1 0.3969 2.4059 -0.2067
34 1 1.6272 4.5310 -0.2050
35 1 5.3193 2.4417 0.2169
36 1 6.0920 0.8008 0.5720
37 1 8.5969 -1.2505 4.4907
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001471960485.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:59:42
Heat of formation + Delta-G solvation = -162.660908 kcal
Electronic energy + Delta-G solvation = -31484.315026 eV
Core-core repulsion = 26429.058716 eV
Total energy + Delta-G solvation = -5055.256310 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.093 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-49.18006 -46.70653 -46.65365 -41.99939 -40.53938 -38.50088 -36.38120 -36.24403
-34.93356 -32.87376 -31.87847 -30.88493 -29.17602 -27.13793 -25.10376 -25.09091
-24.35930 -22.04914 -21.50147 -20.49182 -19.40605 -18.58053 -18.20721 -17.70574
-17.65628 -17.34041 -16.98554 -16.85808 -16.54528 -16.08573 -15.48045 -15.04202
-14.91489 -14.39738 -14.20925 -13.99783 -13.62474 -13.58030 -13.43843 -13.15565
-13.08617 -12.94691 -12.86629 -12.80616 -12.67545 -12.52568 -12.12271 -11.95739
-11.38767 -11.30018 -11.05525 -10.97871 -10.89481 -10.81992 -10.22323 -9.96963
-9.77254 -9.60103 -9.10392 -8.73950 -8.04118 -6.64576 -4.81052 0.04534
0.54413 1.46152 1.58515 2.72011 2.97584 3.07428 3.09502 3.14058
3.33616 3.50392 3.82288 3.97251 4.22544 4.33110 4.63096 4.65264
4.73274 4.82172 4.97421 5.04082 5.04477 5.13568 5.26739 5.29549
5.33220 5.41318 5.60134 5.62950 5.95801 6.11789 6.51660 6.71819
6.77143 6.79694 7.47133 7.68478 7.82567 8.01345 8.41028 8.47962
8.89756 10.43526
Molecular weight = 347.09amu
Principal moments of inertia in cm(-1)
A = 0.009838 B = 0.004469 C = 0.004029
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2845.438919 B = 6264.384900 C = 6947.269985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.706 5.706
3 C 0.314 3.686
4 C -0.211 4.211
5 C 0.013 3.987
6 C -0.121 4.121
7 N 0.044 4.956
8 O -0.183 6.183
9 O -0.170 6.170
10 C 0.034 3.966
11 C -0.216 4.216
12 C 0.560 3.440
13 O -0.550 6.550
14 N -0.699 5.699
15 C 0.199 3.801
16 H 0.097 0.903
17 C -0.538 4.538
18 H 0.096 0.904
19 C 0.101 3.899
20 N -0.852 5.852
21 Si 0.866 3.134
22 H -0.266 1.266
23 H -0.277 1.277
24 H -0.252 1.252
25 C 0.438 3.562
26 F -0.191 7.191
27 F -0.197 7.197
28 F -0.180 7.180
29 H 0.082 0.918
30 H 0.061 0.939
31 H 0.061 0.939
32 H 0.428 0.572
33 H 0.148 0.852
34 H 0.153 0.847
35 H 0.158 0.842
36 H 0.403 0.597
37 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.613 3.849 -5.492 16.993
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.341 5.341
3 C 0.197 3.803
4 C -0.234 4.234
5 C -0.007 4.007
6 C -0.207 4.207
7 N 0.558 4.442
8 O -0.394 6.394
9 O -0.384 6.384
10 C 0.014 3.986
11 C -0.225 4.225
12 C 0.348 3.652
13 O -0.431 6.431
14 N -0.349 5.349
15 C 0.096 3.904
16 H 0.114 0.886
17 C -0.575 4.575
18 H 0.114 0.886
19 C -0.110 4.110
20 N -0.483 5.483
21 Si 0.690 3.310
22 H -0.191 1.191
23 H -0.203 1.203
24 H -0.176 1.176
25 C 0.383 3.617
26 F -0.172 7.172
27 F -0.178 7.178
28 F -0.161 7.161
29 H 0.101 0.899
30 H 0.079 0.921
31 H 0.079 0.921
32 H 0.279 0.721
33 H 0.166 0.834
34 H 0.170 0.830
35 H 0.175 0.825
36 H 0.240 0.760
37 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -16.414 2.356 -5.389 17.436
hybrid contribution -0.057 0.078 0.308 0.323
sum -16.471 2.435 -5.081 17.408
Atomic orbital electron populations
1.21828 0.79902 1.03606 1.01642 1.45892 1.06833 1.07845 1.73534
1.18134 0.89751 0.87504 0.84896 1.20595 1.00731 0.89455 1.12644
1.20799 0.90802 0.99765 0.89349 1.20552 0.92665 0.83292 1.24223
1.43457 1.01124 1.02609 0.96998 1.94487 1.69451 1.20982 1.54466
1.94567 0.95896 1.94157 1.53751 1.20990 1.01607 0.88915 0.87122
1.19493 0.92253 0.93699 1.17070 1.18090 0.83344 0.87313 0.76441
1.90350 1.67581 1.31802 1.53380 1.47548 1.06647 1.11587 1.69138
1.20201 0.95856 0.86437 0.87881 0.88591 1.20739 0.95264 1.48464
0.93079 0.88573 1.25012 0.96378 0.92998 0.96647 1.69851 1.29324
1.42124 1.07048 0.86949 0.83744 0.80671 0.79596 1.19073 1.20287
1.17616 1.21652 0.74342 0.75491 0.90263 1.93084 1.79258 1.61302
1.83577 1.93137 1.50822 1.93308 1.80552 1.93117 1.74702 1.52079
1.96205 0.89907 0.92054 0.92063 0.72061 0.83425 0.82961 0.82454
0.75959 0.91270
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.52 9.97 59.85 0.60 1.12 16
2 N -0.71 -8.15 5.74 -65.20 -0.37 -8.52 16
3 C 0.31 3.88 6.65 -83.61 -0.56 3.32 16
4 C -0.21 -2.02 9.30 -39.42 -0.37 -2.39 16
5 C 0.01 0.14 9.54 -39.55 -0.38 -0.24 16
6 C -0.12 -1.61 6.84 -79.99 -0.55 -2.16 16
7 N 0.04 0.67 4.45 33.94 0.15 0.82 16
8 O -0.18 -2.79 18.43 -29.46 -0.54 -3.33 16
9 O -0.17 -2.84 18.43 -29.46 -0.54 -3.38 16
10 C 0.03 0.48 9.02 -39.20 -0.35 0.13 16
11 C -0.22 -3.17 5.89 -104.80 -0.62 -3.78 16
12 C 0.56 9.99 7.40 -12.51 -0.09 9.90 16
13 O -0.55 -10.58 12.22 5.28 0.06 -10.52 16
14 N -0.70 -13.26 4.86 -56.01 -0.27 -13.53 16
15 C 0.20 4.31 1.68 -69.08 -0.12 4.20 16
16 H 0.10 2.17 4.52 -51.93 -0.23 1.94 16
17 C -0.54 -13.15 8.52 -34.44 -0.29 -13.45 16
18 H 0.10 2.56 8.00 -52.49 -0.42 2.14 16
19 C 0.10 2.53 5.47 -17.82 -0.10 2.43 16
20 N -0.85 -22.71 13.96 55.43 0.77 -21.93 16
21 Si 0.87 19.06 27.30 -169.99 -4.64 14.42 16
22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16
23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16
24 H -0.25 -5.51 6.38 56.52 0.36 -5.15 16
25 C 0.44 9.28 2.83 37.16 0.11 9.39 16
26 F -0.19 -3.96 16.93 2.25 0.04 -3.92 16
27 F -0.20 -4.05 15.83 2.25 0.04 -4.02 16
28 F -0.18 -3.90 16.89 2.25 0.04 -3.86 16
29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16
31 H 0.06 0.33 7.73 -51.93 -0.40 -0.07 16
32 H 0.43 5.94 5.34 -40.93 -0.22 5.72 16
33 H 0.15 0.94 6.72 -52.49 -0.35 0.59 16
34 H 0.15 1.26 7.59 -52.49 -0.40 0.86 16
35 H 0.16 2.14 5.98 -52.49 -0.31 1.83 16
36 H 0.40 7.01 6.66 -40.82 -0.27 6.74 16
37 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16
LS Contribution 335.86 15.07 5.06 5.06
Total: -1.00 -28.63 335.86 -5.56 -34.19
By element:
Atomic # 1 Polarization: 12.69 SS G_CDS: -2.63 Total: 10.05 kcal
Atomic # 6 Polarization: 11.19 SS G_CDS: -2.72 Total: 8.47 kcal
Atomic # 7 Polarization: -43.45 SS G_CDS: 0.28 Total: -43.17 kcal
Atomic # 8 Polarization: -16.21 SS G_CDS: -1.02 Total: -17.23 kcal
Atomic # 9 Polarization: -11.91 SS G_CDS: 0.11 Total: -11.80 kcal
Atomic # 14 Polarization: 19.06 SS G_CDS: -4.64 Total: 14.42 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -28.63 -5.56 -34.19 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001471960485.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -128.473 kcal
(2) G-P(sol) polarization free energy of solvation -28.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.103 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.188 kcal
(6) G-S(sol) free energy of system = (1) + (5) -162.661 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds