Wall clock time and date at job start Wed Apr 1 2020 03:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38881 * 119.99935 * 2 1 4 4 C 1.38954 * 120.17408 * 354.46407 * 3 2 1 5 5 C 1.37956 * 120.06391 * 179.97438 * 4 3 2 6 6 C 1.38614 * 120.41936 * 359.97438 * 5 4 3 7 7 N 1.48023 * 119.82090 * 180.02562 * 6 5 4 8 8 O 1.21806 * 120.00330 * 0.02562 * 7 6 5 9 9 O 1.21801 * 119.99789 * 180.02562 * 7 6 5 10 10 C 1.37742 * 120.35715 * 359.78616 * 6 5 4 11 11 C 1.39745 * 119.92168 * 0.44456 * 10 6 5 12 12 C 1.47436 * 120.20514 * 179.81023 * 11 10 6 13 13 O 1.21594 * 120.00253 * 185.99122 * 12 11 10 14 14 N 1.34781 * 120.00012 * 5.99316 * 12 11 10 15 15 C 1.46501 * 119.99788 * 180.02562 * 14 12 11 16 16 H 1.08994 * 109.46764 * 324.99532 * 15 14 12 17 17 C 1.50703 * 109.46611 * 204.99855 * 15 14 12 18 18 H 1.08001 * 120.00030 * 274.79676 * 17 15 14 19 19 C 1.37875 * 120.00164 * 94.80508 * 17 15 14 20 20 N 1.31512 * 120.00289 * 184.70942 * 19 17 15 21 21 Si 1.86799 * 120.00025 * 4.71356 * 19 17 15 22 22 H 1.48498 * 109.47331 * 94.67083 * 21 19 17 23 23 H 1.48497 * 109.47077 * 214.67330 * 21 19 17 24 24 H 1.48508 * 109.47028 * 334.67324 * 21 19 17 25 25 C 1.53000 * 109.47302 * 84.99974 * 15 14 12 26 26 F 1.39895 * 109.47299 * 54.94456 * 25 15 14 27 27 F 1.39897 * 109.46983 * 294.94748 * 25 15 14 28 28 F 1.39897 * 109.47164 * 174.94892 * 25 15 14 29 29 H 1.09003 * 109.46810 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47369 * 299.99806 * 1 2 3 31 31 H 1.09004 * 109.47079 * 59.99573 * 1 2 3 32 32 H 0.96996 * 120.00300 * 180.02562 * 2 1 3 33 33 H 1.07997 * 119.96994 * 359.97438 * 4 3 2 34 34 H 1.07996 * 119.78831 * 180.02562 * 5 4 3 35 35 H 1.08001 * 120.04113 * 180.25723 * 10 6 5 36 36 H 0.97002 * 119.99975 * 359.97438 * 14 12 11 37 37 H 0.96999 * 119.99971 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1594 1.2028 0.0000 4 6 1.4731 2.4054 -0.1159 5 6 2.1651 3.5989 -0.1151 6 6 3.5463 3.6092 0.0014 7 7 4.2754 4.8974 0.0013 8 8 3.6617 5.9446 -0.1005 9 8 5.4891 4.9102 0.1031 10 6 4.2436 2.4275 0.1222 11 6 3.5577 1.2099 0.1182 12 6 4.2982 -0.0589 0.2429 13 8 3.7124 -1.1184 0.1300 14 7 5.6245 -0.0444 0.4822 15 6 6.3604 -1.3052 0.6056 16 1 5.7258 -2.0508 1.0846 17 6 7.5959 -1.0861 1.4401 18 1 8.5029 -0.7254 0.9778 19 6 7.5685 -1.3461 2.7938 20 7 8.6164 -1.0678 3.5383 21 14 6.0431 -2.0939 3.5706 22 1 6.1969 -3.5691 3.6430 23 1 5.8661 -1.5469 4.9398 24 1 4.8537 -1.7601 2.7465 25 6 6.7651 -1.7978 -0.7853 26 9 7.4827 -0.7942 -1.4448 27 9 5.6174 -2.1108 -1.5214 28 9 7.5652 -2.9386 -0.6615 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 0.3969 2.4059 -0.2067 34 1 1.6272 4.5310 -0.2050 35 1 5.3193 2.4417 0.2169 36 1 6.0920 0.8008 0.5720 37 1 8.5969 -1.2505 4.4907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471960485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:42 Heat of formation + Delta-G solvation = -162.660908 kcal Electronic energy + Delta-G solvation = -31484.315026 eV Core-core repulsion = 26429.058716 eV Total energy + Delta-G solvation = -5055.256310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.18006 -46.70653 -46.65365 -41.99939 -40.53938 -38.50088 -36.38120 -36.24403 -34.93356 -32.87376 -31.87847 -30.88493 -29.17602 -27.13793 -25.10376 -25.09091 -24.35930 -22.04914 -21.50147 -20.49182 -19.40605 -18.58053 -18.20721 -17.70574 -17.65628 -17.34041 -16.98554 -16.85808 -16.54528 -16.08573 -15.48045 -15.04202 -14.91489 -14.39738 -14.20925 -13.99783 -13.62474 -13.58030 -13.43843 -13.15565 -13.08617 -12.94691 -12.86629 -12.80616 -12.67545 -12.52568 -12.12271 -11.95739 -11.38767 -11.30018 -11.05525 -10.97871 -10.89481 -10.81992 -10.22323 -9.96963 -9.77254 -9.60103 -9.10392 -8.73950 -8.04118 -6.64576 -4.81052 0.04534 0.54413 1.46152 1.58515 2.72011 2.97584 3.07428 3.09502 3.14058 3.33616 3.50392 3.82288 3.97251 4.22544 4.33110 4.63096 4.65264 4.73274 4.82172 4.97421 5.04082 5.04477 5.13568 5.26739 5.29549 5.33220 5.41318 5.60134 5.62950 5.95801 6.11789 6.51660 6.71819 6.77143 6.79694 7.47133 7.68478 7.82567 8.01345 8.41028 8.47962 8.89756 10.43526 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.004469 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.438919 B = 6264.384900 C = 6947.269985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.706 5.706 3 C 0.314 3.686 4 C -0.211 4.211 5 C 0.013 3.987 6 C -0.121 4.121 7 N 0.044 4.956 8 O -0.183 6.183 9 O -0.170 6.170 10 C 0.034 3.966 11 C -0.216 4.216 12 C 0.560 3.440 13 O -0.550 6.550 14 N -0.699 5.699 15 C 0.199 3.801 16 H 0.097 0.903 17 C -0.538 4.538 18 H 0.096 0.904 19 C 0.101 3.899 20 N -0.852 5.852 21 Si 0.866 3.134 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.252 1.252 25 C 0.438 3.562 26 F -0.191 7.191 27 F -0.197 7.197 28 F -0.180 7.180 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.428 0.572 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.403 0.597 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.613 3.849 -5.492 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C 0.197 3.803 4 C -0.234 4.234 5 C -0.007 4.007 6 C -0.207 4.207 7 N 0.558 4.442 8 O -0.394 6.394 9 O -0.384 6.384 10 C 0.014 3.986 11 C -0.225 4.225 12 C 0.348 3.652 13 O -0.431 6.431 14 N -0.349 5.349 15 C 0.096 3.904 16 H 0.114 0.886 17 C -0.575 4.575 18 H 0.114 0.886 19 C -0.110 4.110 20 N -0.483 5.483 21 Si 0.690 3.310 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.176 1.176 25 C 0.383 3.617 26 F -0.172 7.172 27 F -0.178 7.178 28 F -0.161 7.161 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.279 0.721 33 H 0.166 0.834 34 H 0.170 0.830 35 H 0.175 0.825 36 H 0.240 0.760 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.414 2.356 -5.389 17.436 hybrid contribution -0.057 0.078 0.308 0.323 sum -16.471 2.435 -5.081 17.408 Atomic orbital electron populations 1.21828 0.79902 1.03606 1.01642 1.45892 1.06833 1.07845 1.73534 1.18134 0.89751 0.87504 0.84896 1.20595 1.00731 0.89455 1.12644 1.20799 0.90802 0.99765 0.89349 1.20552 0.92665 0.83292 1.24223 1.43457 1.01124 1.02609 0.96998 1.94487 1.69451 1.20982 1.54466 1.94567 0.95896 1.94157 1.53751 1.20990 1.01607 0.88915 0.87122 1.19493 0.92253 0.93699 1.17070 1.18090 0.83344 0.87313 0.76441 1.90350 1.67581 1.31802 1.53380 1.47548 1.06647 1.11587 1.69138 1.20201 0.95856 0.86437 0.87881 0.88591 1.20739 0.95264 1.48464 0.93079 0.88573 1.25012 0.96378 0.92998 0.96647 1.69851 1.29324 1.42124 1.07048 0.86949 0.83744 0.80671 0.79596 1.19073 1.20287 1.17616 1.21652 0.74342 0.75491 0.90263 1.93084 1.79258 1.61302 1.83577 1.93137 1.50822 1.93308 1.80552 1.93117 1.74702 1.52079 1.96205 0.89907 0.92054 0.92063 0.72061 0.83425 0.82961 0.82454 0.75959 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.97 59.85 0.60 1.12 16 2 N -0.71 -8.15 5.74 -65.20 -0.37 -8.52 16 3 C 0.31 3.88 6.65 -83.61 -0.56 3.32 16 4 C -0.21 -2.02 9.30 -39.42 -0.37 -2.39 16 5 C 0.01 0.14 9.54 -39.55 -0.38 -0.24 16 6 C -0.12 -1.61 6.84 -79.99 -0.55 -2.16 16 7 N 0.04 0.67 4.45 33.94 0.15 0.82 16 8 O -0.18 -2.79 18.43 -29.46 -0.54 -3.33 16 9 O -0.17 -2.84 18.43 -29.46 -0.54 -3.38 16 10 C 0.03 0.48 9.02 -39.20 -0.35 0.13 16 11 C -0.22 -3.17 5.89 -104.80 -0.62 -3.78 16 12 C 0.56 9.99 7.40 -12.51 -0.09 9.90 16 13 O -0.55 -10.58 12.22 5.28 0.06 -10.52 16 14 N -0.70 -13.26 4.86 -56.01 -0.27 -13.53 16 15 C 0.20 4.31 1.68 -69.08 -0.12 4.20 16 16 H 0.10 2.17 4.52 -51.93 -0.23 1.94 16 17 C -0.54 -13.15 8.52 -34.44 -0.29 -13.45 16 18 H 0.10 2.56 8.00 -52.49 -0.42 2.14 16 19 C 0.10 2.53 5.47 -17.82 -0.10 2.43 16 20 N -0.85 -22.71 13.96 55.43 0.77 -21.93 16 21 Si 0.87 19.06 27.30 -169.99 -4.64 14.42 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.25 -5.51 6.38 56.52 0.36 -5.15 16 25 C 0.44 9.28 2.83 37.16 0.11 9.39 16 26 F -0.19 -3.96 16.93 2.25 0.04 -3.92 16 27 F -0.20 -4.05 15.83 2.25 0.04 -4.02 16 28 F -0.18 -3.90 16.89 2.25 0.04 -3.86 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.06 0.33 7.73 -51.93 -0.40 -0.07 16 32 H 0.43 5.94 5.34 -40.93 -0.22 5.72 16 33 H 0.15 0.94 6.72 -52.49 -0.35 0.59 16 34 H 0.15 1.26 7.59 -52.49 -0.40 0.86 16 35 H 0.16 2.14 5.98 -52.49 -0.31 1.83 16 36 H 0.40 7.01 6.66 -40.82 -0.27 6.74 16 37 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -28.63 335.86 -5.56 -34.19 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -2.63 Total: 10.05 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -2.72 Total: 8.47 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.28 Total: -43.17 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.02 Total: -17.23 kcal Atomic # 9 Polarization: -11.91 SS G_CDS: 0.11 Total: -11.80 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.64 Total: 14.42 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.63 -5.56 -34.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471960485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.473 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds