Wall clock time and date at job start Wed Apr 1 2020 03:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38881 * 119.99935 * 2 1 4 4 C 1.38954 * 120.17408 * 354.46407 * 3 2 1 5 5 C 1.37956 * 120.06391 * 179.97438 * 4 3 2 6 6 C 1.38614 * 120.41936 * 359.97438 * 5 4 3 7 7 N 1.48023 * 119.82090 * 180.02562 * 6 5 4 8 8 O 1.21806 * 120.00330 * 0.02562 * 7 6 5 9 9 O 1.21801 * 119.99789 * 180.02562 * 7 6 5 10 10 C 1.37742 * 120.35715 * 359.78616 * 6 5 4 11 11 C 1.39745 * 119.92168 * 0.44456 * 10 6 5 12 12 C 1.47436 * 120.20514 * 179.81023 * 11 10 6 13 13 O 1.21594 * 120.00253 * 185.99122 * 12 11 10 14 14 N 1.34781 * 120.00012 * 5.99316 * 12 11 10 15 15 C 1.46501 * 119.99788 * 180.02562 * 14 12 11 16 16 H 1.08994 * 109.46764 * 324.99532 * 15 14 12 17 17 C 1.50703 * 109.46611 * 204.99855 * 15 14 12 18 18 H 1.08001 * 120.00030 * 274.79676 * 17 15 14 19 19 C 1.37875 * 120.00164 * 94.80508 * 17 15 14 20 20 N 1.31512 * 120.00289 * 184.70942 * 19 17 15 21 21 Si 1.86799 * 120.00025 * 4.71356 * 19 17 15 22 22 H 1.48498 * 109.47331 * 94.67083 * 21 19 17 23 23 H 1.48497 * 109.47077 * 214.67330 * 21 19 17 24 24 H 1.48508 * 109.47028 * 334.67324 * 21 19 17 25 25 C 1.53000 * 109.47302 * 84.99974 * 15 14 12 26 26 F 1.39895 * 109.47299 * 54.94456 * 25 15 14 27 27 F 1.39897 * 109.46983 * 294.94748 * 25 15 14 28 28 F 1.39897 * 109.47164 * 174.94892 * 25 15 14 29 29 H 1.09003 * 109.46810 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47369 * 299.99806 * 1 2 3 31 31 H 1.09004 * 109.47079 * 59.99573 * 1 2 3 32 32 H 0.96996 * 120.00300 * 180.02562 * 2 1 3 33 33 H 1.07997 * 119.96994 * 359.97438 * 4 3 2 34 34 H 1.07996 * 119.78831 * 180.02562 * 5 4 3 35 35 H 1.08001 * 120.04113 * 180.25723 * 10 6 5 36 36 H 0.97002 * 119.99975 * 359.97438 * 14 12 11 37 37 H 0.96999 * 119.99971 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1594 1.2028 0.0000 4 6 1.4731 2.4054 -0.1159 5 6 2.1651 3.5989 -0.1151 6 6 3.5463 3.6092 0.0014 7 7 4.2754 4.8974 0.0013 8 8 3.6617 5.9446 -0.1005 9 8 5.4891 4.9102 0.1031 10 6 4.2436 2.4275 0.1222 11 6 3.5577 1.2099 0.1182 12 6 4.2982 -0.0589 0.2429 13 8 3.7124 -1.1184 0.1300 14 7 5.6245 -0.0444 0.4822 15 6 6.3604 -1.3052 0.6056 16 1 5.7258 -2.0508 1.0846 17 6 7.5959 -1.0861 1.4401 18 1 8.5029 -0.7254 0.9778 19 6 7.5685 -1.3461 2.7938 20 7 8.6164 -1.0678 3.5383 21 14 6.0431 -2.0939 3.5706 22 1 6.1969 -3.5691 3.6430 23 1 5.8661 -1.5469 4.9398 24 1 4.8537 -1.7601 2.7465 25 6 6.7651 -1.7978 -0.7853 26 9 7.4827 -0.7942 -1.4448 27 9 5.6174 -2.1108 -1.5214 28 9 7.5652 -2.9386 -0.6615 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 0.3969 2.4059 -0.2067 34 1 1.6272 4.5310 -0.2050 35 1 5.3193 2.4417 0.2169 36 1 6.0920 0.8008 0.5720 37 1 8.5969 -1.2505 4.4907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471960485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:42 Heat of formation + Delta-G solvation = -180.790909 kcal Electronic energy + Delta-G solvation = -31485.101202 eV Core-core repulsion = 26429.058716 eV Total energy + Delta-G solvation = -5056.042486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.093 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.92111 -48.42997 -48.40873 -43.12376 -41.70691 -39.74408 -37.54886 -37.28695 -36.42930 -34.62310 -33.08032 -31.79651 -30.73947 -28.02424 -26.95453 -26.02379 -25.50482 -23.39285 -22.69869 -21.91372 -20.75559 -19.79692 -19.70204 -19.38272 -18.79030 -18.52982 -18.51489 -18.47273 -17.91925 -17.34183 -16.84545 -16.18905 -16.11460 -15.63087 -15.33954 -15.32141 -15.16322 -15.07006 -14.87282 -14.81376 -14.60980 -14.55839 -14.35804 -14.28265 -13.88793 -13.71374 -13.17055 -13.08341 -12.96463 -12.64913 -12.57299 -12.19753 -12.19648 -11.98287 -11.88186 -11.67205 -11.21017 -10.98789 -10.59265 -10.27931 -8.94759 -8.58682 -6.78995 -1.03956 -0.45728 0.41531 0.52178 1.22332 1.29117 1.36713 1.50982 1.83964 2.06243 2.12701 2.24270 2.44210 2.86898 3.14543 3.27926 3.32160 3.34994 3.54479 3.72549 3.77029 4.03020 4.28748 4.33330 4.36505 4.45477 4.61324 4.72010 4.73286 4.88219 4.88517 5.09518 5.23399 5.42051 5.81503 5.95626 6.38764 6.39886 6.48642 6.62336 6.94326 7.05552 8.53654 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.004469 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.438919 B = 6264.384900 C = 6947.269985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.709 5.709 3 C 0.313 3.687 4 C -0.187 4.187 5 C 0.026 3.974 6 C -0.133 4.133 7 N 0.046 4.954 8 O -0.164 6.164 9 O -0.228 6.228 10 C 0.033 3.967 11 C -0.238 4.238 12 C 0.559 3.441 13 O -0.566 6.566 14 N -0.705 5.705 15 C 0.209 3.791 16 H 0.092 0.908 17 C -0.540 4.540 18 H 0.064 0.936 19 C 0.060 3.940 20 N -0.896 5.896 21 Si 0.922 3.078 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.250 1.250 25 C 0.439 3.561 26 F -0.189 7.189 27 F -0.190 7.190 28 F -0.184 7.184 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.418 0.582 33 H 0.192 0.808 34 H 0.183 0.817 35 H 0.147 0.853 36 H 0.409 0.591 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.854 4.278 -5.910 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.339 5.339 3 C 0.194 3.806 4 C -0.210 4.210 5 C 0.005 3.995 6 C -0.221 4.221 7 N 0.556 4.444 8 O -0.383 6.383 9 O -0.428 6.428 10 C 0.012 3.988 11 C -0.248 4.248 12 C 0.350 3.650 13 O -0.448 6.448 14 N -0.356 5.356 15 C 0.104 3.896 16 H 0.109 0.891 17 C -0.578 4.578 18 H 0.082 0.918 19 C -0.147 4.147 20 N -0.530 5.530 21 Si 0.745 3.255 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.174 1.174 25 C 0.384 3.616 26 F -0.171 7.171 27 F -0.172 7.172 28 F -0.165 7.165 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.265 0.735 33 H 0.209 0.791 34 H 0.200 0.800 35 H 0.165 0.835 36 H 0.247 0.753 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.591 2.768 -5.811 21.574 hybrid contribution 1.054 -0.059 0.318 1.102 sum -19.537 2.708 -5.494 20.475 Atomic orbital electron populations 1.22189 0.76927 1.05172 1.03556 1.46141 1.08845 1.07010 1.71918 1.18363 0.88884 0.88961 0.84406 1.20983 1.02459 0.87494 1.10082 1.21189 0.89273 1.01458 0.87549 1.20690 0.93719 0.81826 1.25834 1.43725 1.00976 1.03250 0.96482 1.94440 1.69128 1.21752 1.52951 1.94582 0.96870 1.94526 1.56852 1.20896 1.01360 0.89339 0.87163 1.19166 0.93380 0.91903 1.20314 1.18449 0.82545 0.88542 0.75510 1.90352 1.67736 1.32770 1.53897 1.47088 1.07523 1.10687 1.70283 1.19893 0.94742 0.87258 0.87680 0.89089 1.20670 0.95365 1.48323 0.93427 0.91797 1.25642 0.98717 0.93284 0.97056 1.69938 1.31297 1.44183 1.07561 0.86077 0.80571 0.80074 0.78821 1.18486 1.19799 1.17373 1.21573 0.74419 0.75369 0.90279 1.93085 1.79253 1.61252 1.83492 1.93143 1.50442 1.93250 1.80351 1.93106 1.74875 1.52296 1.96237 0.88851 0.90263 0.89710 0.73461 0.79062 0.79992 0.83501 0.75296 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 9.97 127.77 1.27 1.86 16 2 N -0.71 -13.93 5.74 -360.21 -2.07 -16.00 16 3 C 0.31 6.70 6.65 38.71 0.26 6.96 16 4 C -0.19 -2.64 9.30 22.37 0.21 -2.43 16 5 C 0.03 0.43 9.54 22.29 0.21 0.65 16 6 C -0.13 -3.33 6.84 36.35 0.25 -3.08 16 7 N 0.05 1.38 4.45 -46.52 -0.21 1.18 16 8 O -0.16 -4.71 18.43 18.88 0.35 -4.36 16 9 O -0.23 -7.90 18.43 18.88 0.35 -7.56 16 10 C 0.03 0.91 9.02 22.52 0.20 1.12 16 11 C -0.24 -6.68 5.89 -19.98 -0.12 -6.80 16 12 C 0.56 19.66 7.40 86.67 0.64 20.30 16 13 O -0.57 -21.21 12.22 -4.01 -0.05 -21.26 16 14 N -0.71 -27.10 4.86 -449.37 -2.18 -29.29 16 15 C 0.21 9.16 1.68 44.25 0.07 9.24 16 16 H 0.09 4.11 4.52 -2.39 -0.01 4.10 16 17 C -0.54 -27.29 8.52 25.60 0.22 -27.07 16 18 H 0.06 3.59 8.00 -2.91 -0.02 3.56 16 19 C 0.06 3.08 5.47 84.65 0.46 3.54 16 20 N -0.90 -49.22 13.96 21.45 0.30 -48.92 16 21 Si 0.92 39.58 27.30 68.60 1.87 41.45 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.25 -10.52 6.38 99.48 0.64 -9.88 16 25 C 0.44 18.77 2.83 71.98 0.20 18.97 16 26 F -0.19 -7.99 16.93 44.97 0.76 -7.23 16 27 F -0.19 -7.76 15.83 44.97 0.71 -7.05 16 28 F -0.18 -8.06 16.89 44.97 0.76 -7.30 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.50 8.12 -2.39 -0.02 0.48 16 31 H 0.08 0.43 7.73 -2.38 -0.02 0.41 16 32 H 0.42 10.62 5.34 -94.50 -0.50 10.11 16 33 H 0.19 1.06 6.72 -2.91 -0.02 1.04 16 34 H 0.18 2.01 7.59 -2.91 -0.02 1.99 16 35 H 0.15 4.22 5.98 -2.91 -0.02 4.20 16 36 H 0.41 14.81 6.66 -92.71 -0.62 14.20 16 37 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -64.07 335.86 4.48 -59.59 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.01 Total: 23.50 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 3.89 Total: 23.25 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -4.16 Total: -93.04 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: 0.65 Total: -33.17 kcal Atomic # 9 Polarization: -23.82 SS G_CDS: 2.23 Total: -21.58 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.87 Total: 41.45 kcal Total: -64.07 4.48 -59.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471960485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.202 kcal (2) G-P(sol) polarization free energy of solvation -64.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds