Wall clock time and date at job start Wed Apr 1 2020 04:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 120.00091 * 2 1 4 4 C 1.50698 * 109.46840 * 274.99792 * 3 2 1 5 5 H 1.08008 * 120.00164 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00131 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00064 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00144 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46965 * 90.00188 * 8 6 4 10 10 H 1.48501 * 109.47241 * 209.99838 * 8 6 4 11 11 H 1.48497 * 109.47320 * 330.00522 * 8 6 4 12 12 S 1.65601 * 120.00086 * 179.97438 * 2 1 3 13 13 O 1.42107 * 106.40012 * 336.46349 * 12 2 1 14 14 O 1.42094 * 106.40082 * 203.54485 * 12 2 1 15 15 N 1.65592 * 107.21522 * 90.00044 * 12 2 1 16 16 C 1.47567 * 125.68367 * 270.04294 * 15 12 2 17 17 C 1.55187 * 105.00731 * 203.83203 * 16 15 12 18 18 C 1.53634 * 101.42357 * 324.50816 * 17 16 15 19 19 C 1.53432 * 111.45952 * 155.50640 * 18 17 16 20 20 C 1.52027 * 102.07570 * 143.78601 * 19 18 17 21 21 C 1.47470 * 125.86392 * 165.81365 * 20 19 18 22 22 O 1.21473 * 120.00054 * 359.72019 * 21 20 19 23 23 O 1.34754 * 119.99945 * 179.44059 * 21 20 19 24 24 N 1.29259 * 108.27167 * 345.55592 * 20 19 18 25 25 O 1.41812 * 112.88665 * 0.02562 * 24 20 19 26 26 C 1.47407 * 125.67336 * 90.00607 * 15 12 2 27 27 H 1.08997 * 109.47523 * 270.00554 * 1 2 3 28 28 H 1.09006 * 109.47169 * 30.00652 * 1 2 3 29 29 H 1.08996 * 109.47015 * 150.00126 * 1 2 3 30 30 H 1.09000 * 109.47130 * 34.98904 * 3 2 1 31 31 H 1.08996 * 109.47061 * 154.99636 * 3 2 1 32 32 H 0.97002 * 120.00183 * 180.02562 * 7 6 4 33 33 H 1.09007 * 110.32683 * 322.71227 * 16 15 12 34 34 H 1.08992 * 110.33577 * 84.84019 * 16 15 12 35 35 H 1.09000 * 111.02865 * 206.47276 * 17 16 15 36 36 H 1.08997 * 111.03309 * 82.54343 * 17 16 15 37 37 H 1.08999 * 110.99717 * 25.60332 * 19 18 17 38 38 H 1.08997 * 110.79954 * 261.88042 * 19 18 17 39 39 H 0.96699 * 116.99698 * 180.27096 * 23 21 20 40 40 H 1.08998 * 109.99076 * 58.56362 * 26 15 12 41 41 H 1.09007 * 109.98352 * 297.25280 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9290 1.1933 -2.2333 6 6 2.9998 2.9508 -1.6664 7 7 3.5026 3.6474 -0.6707 8 14 3.1788 3.5663 -3.4210 9 1 2.0180 4.4263 -3.7648 10 1 4.4318 4.3538 -3.5439 11 1 3.2289 2.4082 -4.3492 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4063 0.5455 14 8 3.5759 -1.1565 0.5450 15 7 2.5381 -1.8593 -1.5809 16 6 1.6270 -2.6788 -2.4030 17 6 2.5256 -3.2897 -3.5111 18 6 3.5153 -2.1428 -3.7669 19 6 4.8369 -2.6612 -4.3490 20 6 5.2146 -1.5520 -5.3176 21 6 6.5356 -1.3667 -5.9463 22 8 7.4399 -2.1390 -5.6985 23 8 6.7380 -0.3440 -6.8001 24 7 4.1774 -0.8024 -5.4997 25 8 3.0471 -1.2359 -4.7611 26 6 3.7024 -1.4813 -2.4021 27 1 -0.3634 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5140 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6501 2.0044 0.5893 31 1 3.1857 1.1177 0.4344 32 1 3.9654 4.4814 -0.8473 33 1 1.1799 -3.4689 -1.7996 34 1 0.8502 -2.0546 -2.8444 35 1 1.9453 -3.5127 -4.4064 36 1 3.0421 -4.1789 -3.1499 37 1 4.6883 -3.6034 -4.8766 38 1 5.5891 -2.7669 -3.5674 39 1 7.6193 -0.2657 -7.1903 40 1 4.6196 -1.8415 -1.9363 41 1 3.7423 -0.3979 -2.5156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598468756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:17 Heat of formation + Delta-G solvation = -149.749792 kcal Electronic energy + Delta-G solvation = -30314.089504 eV Core-core repulsion = 25936.693753 eV Total energy + Delta-G solvation = -4377.395751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.108 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28097 -41.09335 -38.41727 -38.35329 -37.37146 -37.25097 -36.96340 -34.53227 -34.43817 -32.64250 -30.56010 -29.69163 -27.49314 -26.81242 -26.47820 -24.27162 -23.62001 -22.19036 -21.47794 -20.09011 -19.25837 -18.99765 -18.69363 -18.42022 -18.05137 -17.25705 -17.18134 -17.06965 -16.50238 -16.35471 -16.10844 -15.47949 -15.29610 -14.97094 -14.77644 -14.63154 -14.45254 -14.10131 -13.99262 -13.81291 -13.49049 -13.43878 -13.30744 -13.12650 -13.06794 -12.96374 -12.86746 -12.64869 -12.55041 -12.48067 -12.42984 -12.27371 -12.21025 -11.97189 -11.93643 -11.76554 -10.85410 -10.63217 -10.09392 -9.80248 -8.22590 -6.35277 -0.47700 -0.41483 1.15751 1.35754 1.39032 1.50117 1.51802 1.87274 1.96896 2.37437 2.50400 2.99992 3.00053 3.09404 3.20423 3.38945 3.51646 3.64647 4.03884 4.18706 4.25757 4.28639 4.42430 4.46757 4.52019 4.65821 4.67475 4.76357 4.77681 4.89477 5.00942 5.03554 5.07008 5.20583 5.22122 5.31153 5.47286 5.70360 5.86768 5.88750 6.04826 6.71191 6.77093 7.35158 8.85344 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009447 B = 0.005489 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.251524 B = 5100.098483 C = 7049.917097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.005 6.005 3 C 0.259 3.741 4 C -0.535 4.535 5 H 0.066 0.934 6 C 0.018 3.982 7 N -0.926 5.926 8 Si 0.945 3.055 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.264 1.264 12 S 2.814 3.186 13 O -0.994 6.994 14 O -1.011 7.011 15 N -1.013 6.013 16 C 0.105 3.895 17 C -0.099 4.099 18 C 0.054 3.946 19 C -0.107 4.107 20 C 0.052 3.948 21 C 0.574 3.426 22 O -0.499 6.499 23 O -0.496 6.496 24 N -0.240 5.240 25 O -0.170 6.170 26 C 0.106 3.894 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.022 0.978 31 H 0.019 0.981 32 H 0.266 0.734 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.159 0.841 38 H 0.132 0.868 39 H 0.445 0.555 40 H 0.092 0.908 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.779 -15.696 -11.682 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.846 5.846 3 C 0.135 3.865 4 C -0.575 4.575 5 H 0.084 0.916 6 C -0.182 4.182 7 N -0.565 5.565 8 Si 0.770 3.230 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.188 1.188 12 S 2.824 3.176 13 O -0.978 6.978 14 O -0.995 6.995 15 N -0.853 5.853 16 C -0.019 4.019 17 C -0.138 4.138 18 C 0.012 3.988 19 C -0.146 4.146 20 C -0.141 4.141 21 C 0.414 3.586 22 O -0.385 6.385 23 O -0.310 6.310 24 N 0.016 4.984 25 O -0.192 6.192 26 C -0.020 4.020 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.177 0.823 38 H 0.150 0.850 39 H 0.309 0.691 40 H 0.110 0.890 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.426 -15.300 -11.074 18.892 hybrid contribution 0.911 1.000 -0.532 1.453 sum 1.337 -14.300 -11.606 18.465 Atomic orbital electron populations 1.21460 0.77936 1.03329 1.01986 1.57640 1.15826 1.22279 1.88867 1.18758 0.90880 0.80273 0.96576 1.21753 1.35744 1.06584 0.93391 0.91582 1.25672 0.95028 0.96898 1.00582 1.70044 1.37953 1.15675 1.32858 0.85738 0.77664 0.78837 0.80756 1.19739 1.21032 1.18800 1.00731 0.72178 0.72174 0.72523 1.93527 1.67137 1.60113 1.77020 1.93522 1.42772 1.85685 1.77530 1.58934 1.30820 1.65733 1.29830 1.22407 0.92557 0.94169 0.92789 1.22851 0.95838 0.95235 0.99907 1.23156 0.96244 0.91311 0.88106 1.22907 0.95420 0.98474 0.97752 1.25305 0.92757 0.96614 0.99436 1.19005 0.84899 0.78398 0.76270 1.90970 1.42877 1.44447 1.60203 1.84636 1.43560 1.47107 1.55693 1.78803 0.95221 1.15515 1.08888 1.91186 1.22033 1.62046 1.43962 1.22032 0.89165 1.00327 0.90466 0.92306 0.91002 0.90293 0.95988 0.96317 0.92514 0.87952 0.91227 0.85903 0.85122 0.82337 0.84991 0.69098 0.88986 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.32 10.31 127.77 1.32 4.64 16 2 N -1.01 -42.41 3.23 -543.22 -1.75 -44.16 16 3 C 0.26 13.43 5.41 85.63 0.46 13.89 16 4 C -0.54 -28.87 8.95 25.60 0.23 -28.64 16 5 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 6 C 0.02 1.00 5.46 84.65 0.46 1.47 16 7 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 8 Si 0.94 44.40 29.54 68.60 2.03 46.43 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 12 S 2.81 111.36 6.32 -56.49 -0.36 111.00 16 13 O -0.99 -38.41 16.54 -128.00 -2.12 -40.53 16 14 O -1.01 -47.66 16.28 -128.00 -2.08 -49.75 16 15 N -1.01 -32.47 3.77 -507.38 -1.91 -34.38 16 16 C 0.10 2.38 7.13 86.93 0.62 3.00 16 17 C -0.10 -1.55 6.21 31.56 0.20 -1.35 16 18 C 0.05 1.26 1.09 -10.50 -0.01 1.25 16 19 C -0.11 -1.84 6.04 30.42 0.18 -1.66 16 20 C 0.05 1.21 7.32 45.80 0.34 1.54 16 21 C 0.57 11.97 8.34 70.26 0.59 12.55 16 22 O -0.50 -11.34 17.74 19.92 0.35 -10.99 16 23 O -0.50 -8.48 13.43 -56.65 -0.76 -9.24 16 24 N -0.24 -7.23 12.54 -42.01 -0.53 -7.76 16 25 O -0.17 -5.15 12.01 -39.26 -0.47 -5.62 16 26 C 0.11 3.39 6.48 86.14 0.56 3.95 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 2.45 8.07 -2.38 -0.02 2.43 16 29 H 0.08 2.22 7.79 -2.39 -0.02 2.20 16 30 H 0.02 1.20 8.11 -2.39 -0.02 1.18 16 31 H 0.02 1.09 6.91 -2.39 -0.02 1.07 16 32 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 33 H 0.10 1.99 7.79 -2.38 -0.02 1.97 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.12 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.13 1.23 8.07 -2.39 -0.02 1.21 16 37 H 0.16 1.50 7.94 -2.39 -0.02 1.48 16 38 H 0.13 2.01 7.47 -2.39 -0.02 1.99 16 39 H 0.44 2.45 9.11 -74.06 -0.67 1.77 16 40 H 0.09 2.69 7.46 -2.39 -0.02 2.67 16 41 H 0.06 2.26 7.64 -2.38 -0.02 2.25 16 Total: -1.00 -80.11 365.66 -1.97 -82.08 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.41 Total: 6.70 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 4.94 Total: 10.64 kcal Atomic # 7 Polarization: -136.82 SS G_CDS: -3.91 Total: -140.73 kcal Atomic # 8 Polarization: -111.05 SS G_CDS: -5.08 Total: -116.13 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 111.36 SS G_CDS: -0.36 Total: 111.00 kcal Total: -80.11 -1.97 -82.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598468756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.674 kcal (2) G-P(sol) polarization free energy of solvation -80.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds