Wall clock time and date at job start Wed Apr 1 2020 04:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46880 * 2 1 4 4 C 1.50692 * 109.46934 * 119.99933 * 2 1 3 5 5 H 1.08005 * 119.99859 * 120.00268 * 4 2 1 6 6 C 1.37875 * 120.00260 * 300.00214 * 4 2 1 7 7 N 1.31515 * 119.99767 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 119.99881 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47296 * 90.00415 * 8 6 4 10 10 H 1.48505 * 109.47174 * 210.00024 * 8 6 4 11 11 H 1.48497 * 109.47345 * 329.99756 * 8 6 4 12 12 C 1.50699 * 109.47243 * 240.00203 * 2 1 3 13 13 O 1.20823 * 119.99921 * 240.00183 * 12 2 1 14 14 O 1.34238 * 119.99951 * 59.99648 * 12 2 1 15 15 C 1.45194 * 116.99627 * 179.97438 * 14 12 2 16 16 C 1.50706 * 109.47008 * 180.02562 * 15 14 12 17 17 C 1.38336 * 119.87904 * 359.97438 * 16 15 14 18 18 C 1.38005 * 120.11765 * 180.02562 * 17 16 15 19 19 C 1.39318 * 119.88023 * 0.02562 * 18 17 16 20 20 C 1.48465 * 120.11904 * 180.02562 * 19 18 17 21 21 N 1.34051 * 126.67633 * 179.66756 * 20 19 18 22 22 N 1.28985 * 107.26377 * 179.83206 * 21 20 19 23 23 N 1.28729 * 108.94733 * 0.43459 * 22 21 20 24 24 H 0.96997 * 125.33935 * 179.74476 * 23 22 21 25 25 N 1.28867 * 109.31612 * 359.72103 * 23 22 21 26 26 C 1.39277 * 119.76910 * 0.02562 * 19 18 17 27 27 C 1.38055 * 119.87700 * 359.97438 * 26 19 18 28 28 N 1.48022 * 119.93647 * 179.72481 * 27 26 19 29 29 O 1.21797 * 120.00516 * 359.97438 * 28 27 26 30 30 O 1.21805 * 119.99297 * 180.02562 * 28 27 26 31 31 H 1.08993 * 109.47383 * 299.99609 * 1 2 3 32 32 H 1.08998 * 109.46741 * 60.00195 * 1 2 3 33 33 H 1.09000 * 109.46737 * 179.97438 * 1 2 3 34 34 H 0.97011 * 119.99746 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47327 * 60.00914 * 15 14 12 36 36 H 1.08998 * 109.47444 * 300.00061 * 15 14 12 37 37 H 1.08002 * 119.94572 * 0.02766 * 17 16 15 38 38 H 1.08001 * 120.05909 * 180.02562 * 18 17 16 39 39 H 1.08000 * 120.06503 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5564 8 14 0.6247 1.2789 2.6541 9 1 -0.8029 0.8725 2.6998 10 1 0.9758 1.9950 3.9068 11 1 0.8469 2.1764 1.4921 12 6 2.0324 -0.7104 -1.2305 13 8 2.7270 -1.6927 -1.1196 14 8 1.7081 -0.2517 -2.4497 15 6 2.2278 -0.9856 -3.5896 16 6 1.7637 -0.3284 -4.8640 17 6 0.9651 0.7997 -4.8065 18 6 0.5369 1.4051 -5.9704 19 6 0.9099 0.8778 -7.2048 20 6 0.4527 1.5252 -8.4602 21 7 0.7361 1.1356 -9.7112 22 7 0.1472 1.9585 -10.5111 23 7 -0.4783 2.8425 -9.8151 24 1 -0.9979 3.5771 -10.1774 25 7 -0.3061 2.5982 -8.5616 26 6 1.7131 -0.2588 -7.2571 27 6 2.1359 -0.8565 -6.0867 28 7 2.9846 -2.0681 -6.1407 29 8 3.3090 -2.5370 -7.2169 30 8 3.3578 -2.5966 -5.1087 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.9025 -0.5285 4.4375 35 1 1.8643 -2.0127 -3.5570 36 1 3.3172 -0.9844 -3.5566 37 1 0.6762 1.2074 -3.8490 38 1 -0.0862 2.2860 -5.9243 39 1 2.0055 -0.6713 -8.2114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603442691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:07 Heat of formation + Delta-G solvation = 74.054421 kcal Electronic energy + Delta-G solvation = -29189.075739 eV Core-core repulsion = 24718.233667 eV Total energy + Delta-G solvation = -4470.842072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.06208 -42.43901 -40.27495 -39.57615 -36.85642 -36.15936 -35.03818 -34.38992 -34.06113 -32.38337 -32.09024 -31.33296 -28.03681 -26.56998 -25.26306 -25.20595 -24.43126 -23.50971 -22.61274 -21.92733 -20.06898 -19.75101 -19.19129 -18.66024 -17.80001 -17.69943 -17.20629 -16.92614 -16.43123 -16.14746 -15.96906 -15.57229 -15.24667 -14.73257 -14.41569 -14.15963 -14.03484 -13.40234 -13.02426 -12.95214 -12.73099 -12.46186 -12.34368 -12.16887 -11.97152 -11.74929 -11.73419 -11.60559 -11.56234 -11.27152 -11.11880 -11.01978 -10.75873 -10.50130 -10.42364 -10.06162 -9.75297 -9.36773 -9.34199 -9.23457 -8.69648 -6.16727 -4.20061 -0.50015 -0.02367 0.57474 1.02298 1.10518 1.64241 1.65357 2.85023 2.90122 2.95300 3.04647 3.17326 3.24313 3.30267 3.51278 4.00361 4.06944 4.23975 4.27531 4.31446 4.57207 4.68519 4.87294 5.09318 5.11932 5.22056 5.24946 5.35127 5.42203 5.50473 5.77619 5.79473 5.83547 6.05422 6.19875 6.20909 6.31226 6.59148 6.93290 7.01763 7.40876 7.46499 7.53364 8.33597 8.59465 8.99449 9.39188 10.95498 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014675 B = 0.002534 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.584123 B =11047.962788 C =12857.218696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.028 3.972 3 H 0.065 0.935 4 C -0.520 4.520 5 H 0.096 0.904 6 C 0.075 3.925 7 N -0.889 5.889 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.265 1.265 12 C 0.474 3.526 13 O -0.489 6.489 14 O -0.372 6.372 15 C 0.093 3.907 16 C 0.005 3.995 17 C -0.099 4.099 18 C -0.028 4.028 19 C -0.022 4.022 20 C 0.218 3.782 21 N -0.263 5.263 22 N -0.042 5.042 23 N -0.223 5.223 24 H 0.478 0.522 25 N -0.285 5.285 26 C -0.012 4.012 27 C -0.044 4.044 28 N 0.028 4.972 29 O -0.155 6.155 30 O -0.148 6.148 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.267 0.733 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.171 0.829 38 H 0.155 0.845 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 10.489 -26.458 29.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 H 0.082 0.918 4 C -0.558 4.558 5 H 0.114 0.886 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.190 1.190 12 C 0.317 3.683 13 O -0.372 6.372 14 O -0.291 6.291 15 C 0.020 3.980 16 C 0.003 3.997 17 C -0.117 4.117 18 C -0.048 4.048 19 C -0.026 4.026 20 C -0.062 4.062 21 N -0.136 5.136 22 N -0.037 5.037 23 N -0.069 5.069 24 H 0.333 0.667 25 N -0.137 5.137 26 C -0.033 4.033 27 C -0.127 4.127 28 N 0.547 4.453 29 O -0.371 6.371 30 O -0.363 6.363 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.188 0.812 38 H 0.173 0.827 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.981 10.795 -26.883 30.049 hybrid contribution -0.631 0.818 0.291 1.074 sum -8.613 11.614 -26.592 30.269 Atomic orbital electron populations 1.22115 0.96412 1.01872 1.00011 1.19152 0.93899 0.97650 0.88425 0.91767 1.20912 1.33157 1.14664 0.87040 0.88617 1.24919 0.95651 0.96618 0.95560 1.69868 1.44799 1.39945 0.97978 0.86926 0.80759 0.83633 0.77397 1.20254 1.22084 1.18973 1.24575 0.77349 0.83477 0.82930 1.90606 1.34824 1.25623 1.86180 1.86474 1.70958 1.56181 1.15507 1.21977 1.00341 0.95204 0.80518 1.19915 0.93035 0.94167 0.92623 1.21218 0.96315 0.93825 1.00339 1.21683 0.94656 0.98294 0.90126 1.16907 1.01500 0.95891 0.88309 1.23281 0.97265 0.92157 0.93508 1.76150 1.18492 1.19959 0.98973 1.78973 1.05647 0.97315 1.21751 1.47760 1.34434 1.23175 1.01530 0.66667 1.74915 1.19774 1.17785 1.01231 1.20844 0.91953 0.92235 0.98307 1.20612 1.04589 0.92223 0.95286 1.43500 0.99699 1.01396 1.00748 1.94549 1.59435 1.65535 1.17540 1.94630 1.56958 1.61575 1.23166 0.92922 0.93775 0.92258 0.92268 0.87652 0.87672 0.81189 0.82694 0.81464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.60 37.16 0.32 -2.54 16 2 C 0.03 0.63 2.33 -92.93 -0.22 0.41 16 3 H 0.06 1.37 7.20 -51.93 -0.37 1.00 16 4 C -0.52 -14.35 8.95 -34.45 -0.31 -14.66 16 5 H 0.10 3.01 7.00 -52.48 -0.37 2.64 16 6 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 8 Si 0.88 20.25 24.37 -169.99 -4.14 16.10 16 9 H -0.28 -6.10 6.87 56.52 0.39 -5.71 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.26 -5.59 6.53 56.52 0.37 -5.22 16 12 C 0.47 9.91 7.25 36.01 0.26 10.17 16 13 O -0.49 -11.81 15.21 -18.75 -0.29 -12.10 16 14 O -0.37 -6.05 8.58 -39.28 -0.34 -6.38 16 15 C 0.09 1.34 4.09 36.01 0.15 1.49 16 16 C 0.00 0.05 5.88 -104.57 -0.62 -0.56 16 17 C -0.10 -0.88 9.37 -39.63 -0.37 -1.25 16 18 C -0.03 -0.20 9.70 -39.27 -0.38 -0.58 16 19 C -0.02 -0.18 5.88 -104.89 -0.62 -0.80 16 20 C 0.22 1.84 7.94 -156.30 -1.24 0.60 16 21 N -0.26 -2.47 12.23 32.16 0.39 -2.08 16 22 N -0.04 -0.31 13.47 60.35 0.81 0.50 16 23 N -0.22 -1.02 7.90 60.35 0.48 -0.54 16 24 H 0.48 -0.12 8.96 -340.37 -3.05 -3.17 16 25 N -0.29 -1.94 12.08 32.17 0.39 -1.55 16 26 C -0.01 -0.12 9.21 -39.26 -0.36 -0.48 16 27 C -0.04 -0.49 6.84 -79.99 -0.55 -1.04 16 28 N 0.03 0.38 4.45 33.94 0.15 0.53 16 29 O -0.15 -2.14 18.44 -29.46 -0.54 -2.69 16 30 O -0.15 -2.27 15.40 -29.46 -0.45 -2.73 16 31 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 32 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.27 7.40 8.31 -40.81 -0.34 7.06 16 35 H 0.11 1.59 7.28 -51.93 -0.38 1.21 16 36 H 0.11 1.58 7.30 -51.93 -0.38 1.21 16 37 H 0.17 1.44 6.97 -52.49 -0.37 1.07 16 38 H 0.16 0.78 7.88 -52.49 -0.41 0.37 16 39 H 0.17 1.49 7.44 -52.49 -0.39 1.10 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -34.17 345.97 -7.49 -41.67 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.91 Total: -2.96 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -4.03 Total: -7.25 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 3.00 Total: -28.87 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.62 Total: -23.89 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.14 Total: 16.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.17 -7.49 -41.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.720 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds