Wall clock time and date at job start Wed Apr 1 2020 04:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46880 * 2 1 4 4 C 1.50692 * 109.46934 * 119.99933 * 2 1 3 5 5 H 1.08005 * 119.99859 * 120.00268 * 4 2 1 6 6 C 1.37875 * 120.00260 * 300.00214 * 4 2 1 7 7 N 1.31515 * 119.99767 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 119.99881 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47296 * 90.00415 * 8 6 4 10 10 H 1.48505 * 109.47174 * 210.00024 * 8 6 4 11 11 H 1.48497 * 109.47345 * 329.99756 * 8 6 4 12 12 C 1.50699 * 109.47243 * 240.00203 * 2 1 3 13 13 O 1.20823 * 119.99921 * 240.00183 * 12 2 1 14 14 O 1.34238 * 119.99951 * 59.99648 * 12 2 1 15 15 C 1.45194 * 116.99627 * 179.97438 * 14 12 2 16 16 C 1.50706 * 109.47008 * 180.02562 * 15 14 12 17 17 C 1.38336 * 119.87904 * 359.97438 * 16 15 14 18 18 C 1.38005 * 120.11765 * 180.02562 * 17 16 15 19 19 C 1.39318 * 119.88023 * 0.02562 * 18 17 16 20 20 C 1.48465 * 120.11904 * 180.02562 * 19 18 17 21 21 N 1.34051 * 126.67633 * 179.66756 * 20 19 18 22 22 N 1.28985 * 107.26377 * 179.83206 * 21 20 19 23 23 N 1.28729 * 108.94733 * 0.43459 * 22 21 20 24 24 H 0.96997 * 125.33935 * 179.74476 * 23 22 21 25 25 N 1.28867 * 109.31612 * 359.72103 * 23 22 21 26 26 C 1.39277 * 119.76910 * 0.02562 * 19 18 17 27 27 C 1.38055 * 119.87700 * 359.97438 * 26 19 18 28 28 N 1.48022 * 119.93647 * 179.72481 * 27 26 19 29 29 O 1.21797 * 120.00516 * 359.97438 * 28 27 26 30 30 O 1.21805 * 119.99297 * 180.02562 * 28 27 26 31 31 H 1.08993 * 109.47383 * 299.99609 * 1 2 3 32 32 H 1.08998 * 109.46741 * 60.00195 * 1 2 3 33 33 H 1.09000 * 109.46737 * 179.97438 * 1 2 3 34 34 H 0.97011 * 119.99746 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47327 * 60.00914 * 15 14 12 36 36 H 1.08998 * 109.47444 * 300.00061 * 15 14 12 37 37 H 1.08002 * 119.94572 * 0.02766 * 17 16 15 38 38 H 1.08001 * 120.05909 * 180.02562 * 18 17 16 39 39 H 1.08000 * 120.06503 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5564 8 14 0.6247 1.2789 2.6541 9 1 -0.8029 0.8725 2.6998 10 1 0.9758 1.9950 3.9068 11 1 0.8469 2.1764 1.4921 12 6 2.0324 -0.7104 -1.2305 13 8 2.7270 -1.6927 -1.1196 14 8 1.7081 -0.2517 -2.4497 15 6 2.2278 -0.9856 -3.5896 16 6 1.7637 -0.3284 -4.8640 17 6 0.9651 0.7997 -4.8065 18 6 0.5369 1.4051 -5.9704 19 6 0.9099 0.8778 -7.2048 20 6 0.4527 1.5252 -8.4602 21 7 0.7361 1.1356 -9.7112 22 7 0.1472 1.9585 -10.5111 23 7 -0.4783 2.8425 -9.8151 24 1 -0.9979 3.5771 -10.1774 25 7 -0.3061 2.5982 -8.5616 26 6 1.7131 -0.2588 -7.2571 27 6 2.1359 -0.8565 -6.0867 28 7 2.9846 -2.0681 -6.1407 29 8 3.3090 -2.5370 -7.2169 30 8 3.3578 -2.5966 -5.1087 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.9025 -0.5285 4.4375 35 1 1.8643 -2.0127 -3.5570 36 1 3.3172 -0.9844 -3.5566 37 1 0.6762 1.2074 -3.8490 38 1 -0.0862 2.2860 -5.9243 39 1 2.0055 -0.6713 -8.2114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603442691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:07 Heat of formation + Delta-G solvation = 50.722256 kcal Electronic energy + Delta-G solvation = -29190.087498 eV Core-core repulsion = 24718.233667 eV Total energy + Delta-G solvation = -4471.853830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.59637 -43.45243 -41.58966 -40.67706 -38.00281 -37.57276 -35.94518 -35.68012 -35.05222 -33.46354 -33.14898 -32.73556 -29.04469 -27.49198 -27.14149 -25.79021 -25.63435 -24.54259 -23.69170 -22.75186 -21.50192 -20.54294 -20.07096 -19.59170 -18.98510 -18.79205 -18.25352 -18.14810 -18.01588 -17.47625 -17.11515 -16.57199 -16.47971 -15.88339 -15.42754 -15.29635 -15.00742 -14.74760 -14.32614 -14.15387 -13.97837 -13.58126 -13.50159 -13.37031 -12.92634 -12.87365 -12.69984 -12.56744 -12.55070 -12.42335 -12.33415 -12.32388 -12.19138 -12.09153 -11.79251 -11.47232 -11.25216 -11.09263 -10.77976 -10.74447 -10.12406 -8.28174 -6.39288 -1.42449 -0.74309 0.03786 0.11848 0.17932 0.96976 1.30415 1.34758 1.40628 1.44443 1.52554 1.55769 2.13161 2.33719 2.35615 2.90853 3.04647 3.05303 3.22268 3.55046 3.57991 3.84496 3.93442 4.01570 4.03218 4.22969 4.30556 4.40645 4.45222 4.53574 4.59394 4.70414 4.81695 4.88305 5.01567 5.05110 5.25679 5.34112 5.43090 5.49794 5.53415 6.23874 6.33814 6.73992 6.94213 6.98997 7.25508 8.88778 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014675 B = 0.002534 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.584123 B =11047.962788 C =12857.218696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.023 3.977 3 H 0.088 0.912 4 C -0.535 4.535 5 H 0.034 0.966 6 C 0.011 3.989 7 N -0.948 5.948 8 Si 0.957 3.043 9 H -0.257 1.257 10 H -0.300 1.300 11 H -0.223 1.223 12 C 0.481 3.519 13 O -0.535 6.535 14 O -0.346 6.346 15 C 0.097 3.903 16 C -0.007 4.007 17 C -0.091 4.091 18 C -0.001 4.001 19 C -0.012 4.012 20 C 0.205 3.795 21 N -0.290 5.290 22 N -0.051 5.051 23 N -0.193 5.193 24 H 0.498 0.502 25 N -0.276 5.276 26 C -0.008 4.008 27 C -0.050 4.050 28 N 0.030 4.970 29 O -0.147 6.147 30 O -0.201 6.201 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.269 0.731 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.185 0.815 38 H 0.190 0.810 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 14.829 -28.949 34.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.004 3.996 3 H 0.105 0.895 4 C -0.572 4.572 5 H 0.052 0.948 6 C -0.186 4.186 7 N -0.587 5.587 8 Si 0.781 3.219 9 H -0.183 1.183 10 H -0.228 1.228 11 H -0.146 1.146 12 C 0.325 3.675 13 O -0.422 6.422 14 O -0.264 6.264 15 C 0.023 3.977 16 C -0.009 4.009 17 C -0.109 4.109 18 C -0.020 4.020 19 C -0.017 4.017 20 C -0.075 4.075 21 N -0.162 5.162 22 N -0.046 5.046 23 N -0.045 5.045 24 H 0.357 0.643 25 N -0.129 5.129 26 C -0.029 4.029 27 C -0.133 4.133 28 N 0.543 4.457 29 O -0.369 6.369 30 O -0.405 6.405 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.202 0.798 38 H 0.207 0.793 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.219 15.133 -29.364 34.887 hybrid contribution 0.358 -0.481 0.815 1.012 sum -10.861 14.651 -28.549 33.877 Atomic orbital electron populations 1.22046 0.93348 1.02157 1.02362 1.19102 0.96218 0.97732 0.86554 0.89492 1.21055 1.32653 1.13422 0.90117 0.94784 1.25996 0.97254 1.00775 0.94585 1.70065 1.47108 1.42660 0.98857 0.85749 0.78849 0.78879 0.78421 1.18292 1.22819 1.14619 1.24359 0.76387 0.82546 0.84173 1.90608 1.36889 1.27678 1.87044 1.86391 1.70083 1.55404 1.14500 1.21934 0.99733 0.95003 0.81024 1.19676 0.94958 0.95555 0.90714 1.21377 0.95258 0.92558 1.01670 1.21971 0.93183 0.98237 0.88650 1.16980 1.00518 0.95077 0.89079 1.23230 0.98147 0.92863 0.93217 1.76144 1.19530 1.21019 0.99556 1.78942 1.06126 0.97755 1.21748 1.47851 1.33034 1.22765 1.00823 0.64252 1.74873 1.19079 1.16957 1.01952 1.20897 0.91891 0.92525 0.97577 1.20601 1.05130 0.91512 0.96096 1.43861 0.99586 1.01952 1.00253 1.94508 1.59045 1.65843 1.17479 1.94644 1.59171 1.63242 1.23458 0.92977 0.88740 0.93269 0.92157 0.89087 0.89150 0.79824 0.79323 0.81149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 8.60 71.98 0.62 -4.40 16 2 C 0.02 1.00 2.33 -12.29 -0.03 0.98 16 3 H 0.09 3.41 7.20 -2.39 -0.02 3.39 16 4 C -0.53 -30.54 8.95 25.60 0.23 -30.31 16 5 H 0.03 2.30 7.00 -2.91 -0.02 2.28 16 6 C 0.01 0.64 5.45 84.65 0.46 1.10 16 7 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 8 Si 0.96 40.37 24.37 68.60 1.67 42.04 16 9 H -0.26 -10.08 6.87 99.48 0.68 -9.40 16 10 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.22 -7.92 6.53 99.48 0.65 -7.27 16 12 C 0.48 20.21 7.25 71.24 0.52 20.73 16 13 O -0.53 -27.38 15.21 21.97 0.33 -27.04 16 14 O -0.35 -10.77 8.58 -51.49 -0.44 -11.21 16 15 C 0.10 2.82 4.09 71.24 0.29 3.11 16 16 C -0.01 -0.14 5.88 -19.83 -0.12 -0.26 16 17 C -0.09 -1.28 9.37 22.24 0.21 -1.07 16 18 C 0.00 -0.01 9.70 22.47 0.22 0.21 16 19 C -0.01 -0.17 5.88 -20.04 -0.12 -0.28 16 20 C 0.21 2.78 7.94 137.38 1.09 3.87 16 21 N -0.29 -4.76 12.23 -52.18 -0.64 -5.40 16 22 N -0.05 -0.62 13.47 37.02 0.50 -0.13 16 23 N -0.19 -1.06 7.90 37.02 0.29 -0.77 16 24 H 0.50 -2.18 8.96 -347.54 -3.12 -5.29 16 25 N -0.28 -2.59 12.08 -52.12 -0.63 -3.22 16 26 C -0.01 -0.13 9.21 22.48 0.21 0.08 16 27 C -0.05 -1.09 6.84 36.34 0.25 -0.84 16 28 N 0.03 0.83 4.45 -46.53 -0.21 0.63 16 29 O -0.15 -4.15 18.44 18.89 0.35 -3.80 16 30 O -0.20 -6.66 15.40 18.88 0.29 -6.37 16 31 H 0.05 1.86 3.27 -2.39 -0.01 1.85 16 32 H 0.09 2.40 8.11 -2.39 -0.02 2.38 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 35 H 0.09 2.92 7.28 -2.39 -0.02 2.90 16 36 H 0.09 2.90 7.30 -2.39 -0.02 2.89 16 37 H 0.18 2.17 6.97 -2.91 -0.02 2.14 16 38 H 0.19 0.69 7.88 -2.91 -0.02 0.66 16 39 H 0.17 2.82 7.44 -2.91 -0.02 2.80 16 Total: -1.00 -81.02 345.97 3.62 -77.40 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -2.03 Total: 3.63 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 3.83 Total: -7.10 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -0.39 Total: -67.54 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: 0.53 Total: -48.43 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.67 Total: 42.04 kcal Total: -81.02 3.62 -77.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.125 kcal (2) G-P(sol) polarization free energy of solvation -81.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds