Wall clock time and date at job start Wed Apr 1 2020 04:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86792 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47317 * 275.81386 * 3 2 1 5 5 H 1.48507 * 109.47055 * 35.81048 * 3 2 1 6 6 H 1.48495 * 109.47375 * 155.81088 * 3 2 1 7 7 C 1.38948 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99993 * 339.00265 * 7 2 1 9 9 N 1.37096 * 120.00283 * 158.99216 * 7 2 1 10 10 C 1.46500 * 120.00213 * 320.65991 * 9 7 2 11 11 C 1.50701 * 109.46954 * 269.99542 * 10 9 7 12 12 O 1.20829 * 119.99901 * 359.97438 * 11 10 9 13 13 O 1.34227 * 120.00168 * 180.02562 * 11 10 9 14 14 C 1.34777 * 119.99739 * 140.64752 * 9 7 2 15 15 O 1.21301 * 119.99648 * 185.00567 * 14 9 7 16 16 C 1.50694 * 120.00190 * 5.01151 * 14 9 7 17 17 C 1.52999 * 109.47140 * 185.45964 * 16 14 9 18 18 C 1.50704 * 109.47405 * 179.10302 * 17 16 14 19 19 N 1.30971 * 126.44359 * 89.99526 * 18 17 16 20 20 C 1.35190 * 105.57702 * 179.97438 * 19 18 17 21 21 C 1.48559 * 126.40495 * 179.97438 * 20 19 18 22 22 N 1.32506 * 119.20371 * 359.73388 * 21 20 19 23 23 C 1.32179 * 120.74935 * 179.71193 * 22 21 20 24 24 C 1.38709 * 119.18445 * 0.55217 * 23 22 21 25 25 C 1.38713 * 118.53686 * 359.72578 * 24 23 22 26 26 N 1.32182 * 119.18242 * 0.02562 * 25 24 23 27 27 N 1.30680 * 107.18750 * 0.02562 * 20 19 18 28 28 O 1.21288 * 110.11448 * 359.97438 * 27 20 19 29 29 H 0.96999 * 119.99690 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47092 * 29.99229 * 10 9 7 31 31 H 1.08993 * 109.47447 * 149.99089 * 10 9 7 32 32 H 0.96696 * 117.00326 * 180.02562 * 13 11 10 33 33 H 1.08998 * 109.47130 * 65.46131 * 16 14 9 34 34 H 1.08992 * 109.47478 * 305.45840 * 16 14 9 35 35 H 1.09000 * 109.47345 * 59.10082 * 17 16 14 36 36 H 1.09000 * 109.47224 * 299.10362 * 17 16 14 37 37 H 1.08006 * 120.41156 * 180.29534 * 23 22 21 38 38 H 1.07998 * 120.73476 * 179.74464 * 24 23 22 39 39 H 1.08000 * 120.40589 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.3729 2.1173 -1.3928 5 1 1.5124 2.6141 0.8192 6 1 3.6017 1.4078 0.5737 7 6 2.0089 -1.2033 -0.0005 8 1 1.5226 -2.1077 0.3342 9 7 3.3115 -1.2427 -0.4262 10 6 3.7297 -0.4426 -1.5799 11 6 3.5578 -1.2506 -2.8404 12 8 3.1304 -2.3792 -2.7809 13 8 3.8806 -0.7169 -4.0290 14 6 4.2074 -2.0174 0.2170 15 8 5.3775 -1.9835 -0.1013 16 6 3.7557 -2.9255 1.3314 17 6 4.9754 -3.5857 1.9775 18 6 4.5253 -4.4770 3.1063 19 7 4.2108 -5.7453 3.0182 20 6 3.8716 -6.1232 4.2711 21 6 3.4354 -7.4783 4.6956 22 7 3.3507 -8.4431 3.7913 23 6 2.9714 -9.6614 4.1364 24 6 2.6497 -9.9200 5.4606 25 6 2.7441 -8.8854 6.3797 26 7 3.1349 -7.6916 5.9684 27 7 3.9980 -5.0731 5.0387 28 8 4.3721 -4.1218 4.3858 29 1 -0.4849 0.8401 0.0004 30 1 3.1175 0.4574 -1.6390 31 1 4.7770 -0.1628 -1.4677 32 1 3.7527 -1.2734 -4.8093 33 1 3.0969 -3.6949 0.9287 34 1 3.2188 -2.3429 2.0800 35 1 5.6420 -2.8158 2.3662 36 1 5.5033 -4.1812 1.2328 37 1 2.9088 -10.4449 3.3956 38 1 2.3329 -10.9053 5.7694 39 1 2.5005 -9.0531 7.4184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:40 Heat of formation + Delta-G solvation = -9.700040 kcal Electronic energy + Delta-G solvation = -29084.509605 eV Core-core repulsion = 24610.035668 eV Total energy + Delta-G solvation = -4474.473938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.83335 -42.08982 -41.56365 -40.33991 -37.36768 -37.16438 -36.69897 -35.66385 -34.97476 -34.02043 -33.31790 -32.18687 -30.07843 -27.27629 -27.07598 -26.27972 -25.51024 -24.41032 -23.15271 -22.45465 -20.97808 -19.55161 -19.37485 -19.22011 -18.86991 -18.58576 -18.27135 -17.80771 -17.45370 -17.02944 -16.62324 -16.54859 -16.34858 -16.11975 -15.98107 -15.34307 -15.16669 -14.75724 -14.53452 -14.38963 -14.25383 -13.92141 -13.71385 -13.50518 -13.34514 -13.06784 -12.77449 -12.59158 -12.35123 -12.33035 -12.12998 -12.12114 -12.10139 -11.93272 -11.69653 -11.52137 -11.18348 -10.64412 -10.44670 -10.42673 -9.90348 -8.52850 -6.21765 -0.79437 0.02696 0.07764 1.07885 1.18760 1.23523 1.37212 1.49188 1.54339 1.62653 1.76520 2.09099 2.18671 2.44898 2.63833 2.67723 2.97134 3.22778 3.48745 3.63494 3.76982 3.91587 3.94552 4.06182 4.06869 4.15095 4.21761 4.33091 4.39557 4.47005 4.63383 4.68068 4.76066 4.91320 5.03029 5.23592 5.28601 5.60551 5.86363 6.02935 6.13496 6.75195 6.87265 6.93960 7.01606 7.25112 7.59933 8.61108 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015058 B = 0.002435 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.068567 B =11494.544639 C =11980.490755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.918 3.082 4 H -0.250 1.250 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.347 4.347 8 H 0.076 0.924 9 N -0.461 5.461 10 C 0.098 3.902 11 C 0.470 3.530 12 O -0.537 6.537 13 O -0.508 6.508 14 C 0.500 3.500 15 O -0.597 6.597 16 C -0.112 4.112 17 C -0.001 4.001 18 C 0.206 3.794 19 N -0.469 5.469 20 C 0.205 3.795 21 C 0.363 3.637 22 N -0.511 5.511 23 C 0.137 3.863 24 C -0.182 4.182 25 C 0.138 3.862 26 N -0.519 5.519 27 N -0.356 5.356 28 O 0.097 5.903 29 H 0.282 0.718 30 H 0.108 0.892 31 H 0.136 0.864 32 H 0.425 0.575 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.134 0.866 36 H 0.121 0.879 37 H 0.213 0.787 38 H 0.208 0.792 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.489 -13.080 7.534 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.179 4.179 3 Si 0.741 3.259 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.167 1.167 7 C -0.474 4.474 8 H 0.094 0.906 9 N -0.182 5.182 10 C -0.027 4.027 11 C 0.311 3.689 12 O -0.426 6.426 13 O -0.322 6.322 14 C 0.291 3.709 15 O -0.482 6.482 16 C -0.152 4.152 17 C -0.040 4.040 18 C -0.014 4.014 19 N -0.202 5.202 20 C -0.067 4.067 21 C 0.096 3.904 22 N -0.227 5.227 23 C -0.028 4.028 24 C -0.204 4.204 25 C -0.027 4.027 26 N -0.235 5.235 27 N -0.060 5.060 28 O 0.032 5.968 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.153 0.847 32 H 0.286 0.714 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.152 0.848 36 H 0.139 0.861 37 H 0.229 0.771 38 H 0.225 0.775 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.853 -12.561 8.104 16.445 hybrid contribution -0.786 -0.282 -0.558 1.004 sum 6.067 -12.843 7.547 16.084 Atomic orbital electron populations 1.69855 1.07938 1.29570 1.45622 1.26015 0.95634 1.01693 0.94529 0.86239 0.80652 0.79359 0.79665 1.17539 1.20683 1.16719 1.18854 0.86250 0.96001 1.46336 0.90582 1.43374 1.09521 1.42013 1.23321 1.21426 1.04844 0.94166 0.82249 1.24266 0.72563 0.85955 0.86086 1.90672 1.42778 1.21488 1.87679 1.84482 1.79628 1.50726 1.17341 1.20566 0.84542 0.82095 0.83661 1.90561 1.17768 1.70332 1.69564 1.21280 0.98005 0.98563 0.97386 1.20097 0.97754 0.96704 0.89436 1.29165 0.94381 0.90772 0.87088 1.72107 1.17728 1.10130 1.20226 1.23032 1.03441 0.94221 0.85992 1.18813 0.96375 0.88914 0.86344 1.68214 1.14136 1.02378 1.37979 1.24140 0.89013 0.92202 0.97474 1.23664 0.98655 1.03956 0.94128 1.24120 0.89566 0.85801 1.03174 1.68184 1.12448 1.26963 1.15937 1.74949 1.16160 0.95789 1.19072 1.85333 1.59862 1.32157 1.19490 0.90818 0.87490 0.84674 0.71355 0.89583 0.87496 0.84831 0.86097 0.77066 0.77520 0.76774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.51 13.96 21.66 0.30 -48.21 16 2 C 0.03 1.33 5.32 84.92 0.45 1.78 16 3 Si 0.92 37.34 25.02 68.60 1.72 39.06 16 4 H -0.25 -9.31 6.71 99.48 0.67 -8.65 16 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.24 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.35 -17.60 8.93 84.04 0.75 -16.85 16 8 H 0.08 4.25 7.45 -2.91 -0.02 4.22 16 9 N -0.46 -20.89 1.63 -639.60 -1.04 -21.93 16 10 C 0.10 3.94 4.84 85.63 0.41 4.35 16 11 C 0.47 18.63 8.40 71.24 0.60 19.22 16 12 O -0.54 -25.25 17.19 21.95 0.38 -24.87 16 13 O -0.51 -14.92 13.42 -51.38 -0.69 -15.61 16 14 C 0.50 21.08 7.62 87.66 0.67 21.74 16 15 O -0.60 -25.63 15.55 -3.10 -0.05 -25.68 16 16 C -0.11 -4.02 4.33 29.85 0.13 -3.89 16 17 C 0.00 -0.02 5.14 29.85 0.15 0.13 16 18 C 0.21 6.53 7.75 88.36 0.68 7.21 16 19 N -0.47 -16.74 11.55 -302.64 -3.50 -20.24 16 20 C 0.20 7.27 7.99 137.37 1.10 8.37 16 21 C 0.36 11.35 7.60 137.66 1.05 12.40 16 22 N -0.51 -14.15 10.34 -189.04 -1.95 -16.10 16 23 C 0.14 2.11 11.30 84.75 0.96 3.07 16 24 C -0.18 -1.69 10.17 22.50 0.23 -1.46 16 25 C 0.14 2.01 11.30 84.75 0.96 2.96 16 26 N -0.52 -13.78 10.33 -189.04 -1.95 -15.73 16 27 N -0.36 -12.45 12.16 -59.28 -0.72 -13.17 16 28 O 0.10 3.13 11.29 74.65 0.84 3.97 16 29 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.11 4.23 3.42 -2.39 -0.01 4.23 16 31 H 0.14 4.85 7.36 -2.39 -0.02 4.83 16 32 H 0.42 8.24 9.10 -74.06 -0.67 7.57 16 33 H 0.09 3.32 8.04 -2.39 -0.02 3.30 16 34 H 0.11 3.78 7.86 -2.39 -0.02 3.76 16 35 H 0.13 3.28 8.13 -2.39 -0.02 3.26 16 36 H 0.12 3.51 8.06 -2.39 -0.02 3.49 16 37 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.21 -0.27 8.06 -2.91 -0.02 -0.30 16 39 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -79.13 355.95 1.91 -77.22 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.44 Total: 22.26 kcal Atomic # 6 Polarization: 50.91 SS G_CDS: 8.14 Total: 59.04 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -8.87 Total: -135.38 kcal Atomic # 8 Polarization: -62.68 SS G_CDS: 0.48 Total: -62.19 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 1.72 Total: 39.06 kcal Total: -79.13 1.91 -77.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.516 kcal (2) G-P(sol) polarization free energy of solvation -79.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds