Wall clock time and date at job start Wed Apr 1 2020 04:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39626 * 120.15239 * 45.54272 * 3 2 1 5 5 C 1.37950 * 119.84847 * 180.02562 * 4 3 2 6 6 C 1.38365 * 120.14797 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.84582 * 179.97438 * 6 5 4 8 8 S 1.81401 * 109.47002 * 90.00505 * 7 6 5 9 9 C 1.81403 * 102.99791 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46864 * 179.97438 * 9 8 7 11 11 O 1.20826 * 120.00144 * 354.56586 * 10 9 8 12 12 O 1.34230 * 119.99876 * 174.83789 * 10 9 8 13 13 C 1.45205 * 117.00148 * 184.98184 * 12 10 9 14 14 C 1.52995 * 109.47110 * 184.57943 * 13 12 10 15 15 C 1.50702 * 112.99817 * 46.04674 * 14 13 12 16 16 H 1.08004 * 120.00336 * 265.90247 * 15 14 13 17 17 C 1.37881 * 120.00122 * 85.90939 * 15 14 13 18 18 N 1.31512 * 120.00173 * 173.73313 * 17 15 14 19 19 Si 1.86800 * 119.99711 * 353.72068 * 17 15 14 20 20 H 1.48498 * 109.47174 * 95.41539 * 19 17 15 21 21 H 1.48501 * 109.47220 * 215.41348 * 19 17 15 22 22 H 1.48496 * 109.47495 * 335.41286 * 19 17 15 23 23 C 1.54027 * 113.82012 * 274.05841 * 14 13 12 24 24 O 1.44173 * 85.52332 * 223.19468 * 23 14 13 25 25 C 1.44179 * 93.33649 * 24.19236 * 24 23 14 26 26 C 1.38362 * 120.30739 * 0.24242 * 6 5 4 27 27 C 1.37950 * 120.15089 * 359.48429 * 26 6 5 28 28 H 1.08003 * 120.07997 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.92968 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47288 * 330.00166 * 7 6 5 31 31 H 1.09002 * 109.47127 * 210.00541 * 7 6 5 32 32 H 1.08997 * 109.47262 * 60.00144 * 9 8 7 33 33 H 1.09001 * 109.46847 * 299.99463 * 9 8 7 34 34 H 1.08999 * 109.47276 * 304.58407 * 13 12 10 35 35 H 1.09001 * 109.46721 * 64.58035 * 13 12 10 36 36 H 0.97000 * 120.00017 * 179.97438 * 18 17 15 37 37 H 1.08997 * 113.86786 * 337.34654 * 23 14 13 38 38 H 1.09011 * 113.86725 * 109.04605 * 23 14 13 39 39 H 1.08994 * 113.86623 * 221.65914 * 25 24 23 40 40 H 1.08997 * 113.86584 * 89.95570 * 25 24 23 41 41 H 1.07999 * 119.92744 * 179.72477 * 26 6 5 42 42 H 1.07994 * 120.08038 * 180.26191 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.8446 -0.8618 5 6 4.6492 -0.8393 -0.8562 6 6 5.3374 0.0008 0.0012 7 6 6.8444 0.0007 0.0021 8 16 7.4498 1.2221 -1.1948 9 6 9.2522 1.0753 -1.0512 10 6 9.9120 2.0425 -1.9999 11 8 9.2401 2.6866 -2.7703 12 8 11.2468 2.1845 -1.9929 13 6 11.8050 3.2123 -2.8535 14 6 13.3326 3.1489 -2.7988 15 6 13.8687 1.7462 -2.9258 16 1 14.0859 1.1687 -2.0393 17 6 14.0819 1.1999 -4.1737 18 7 14.6637 0.0259 -4.2870 19 14 13.5442 2.1274 -5.7034 20 1 14.6926 2.8980 -6.2443 21 1 13.0703 1.1614 -6.7269 22 1 12.4423 3.0600 -5.3552 23 6 13.9472 3.9495 -1.6353 24 8 14.9151 4.3989 -2.6047 25 6 14.0308 4.1673 -3.7197 26 6 4.6484 0.8370 0.8617 27 6 3.2689 0.8460 0.8626 28 1 2.7338 -1.5018 -1.5306 29 1 5.1933 -1.4922 -1.5224 30 1 7.2079 -0.9892 -0.2736 31 1 7.2072 0.2567 0.9976 32 1 9.5550 0.0584 -1.3008 33 1 9.5551 1.3043 -0.0294 34 1 11.4710 3.0490 -3.8781 35 1 11.4696 4.1921 -2.5138 36 1 14.8134 -0.3585 -5.1649 37 1 13.3021 4.7421 -1.2561 38 1 14.3696 3.3272 -0.8462 39 1 14.5195 3.7177 -4.5841 40 1 13.4112 5.0263 -3.9771 41 1 5.1918 1.4871 1.5315 42 1 2.7323 1.5021 1.5317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646886935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:43 Heat of formation + Delta-G solvation = -45.239137 kcal Electronic energy + Delta-G solvation = -25938.192959 eV Core-core repulsion = 21976.178393 eV Total energy + Delta-G solvation = -3962.014565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.71121 -40.95059 -40.46198 -37.64293 -37.46215 -34.86617 -33.95902 -32.71065 -32.03077 -31.29421 -28.69540 -27.67906 -27.18062 -26.02320 -23.72466 -23.55272 -22.16551 -20.97840 -19.90748 -18.84359 -18.40979 -18.01488 -17.88177 -17.39466 -17.00087 -16.67565 -16.43270 -16.37918 -15.97488 -15.56301 -15.47840 -15.19788 -15.11783 -14.88541 -14.70336 -14.47023 -14.22783 -13.98441 -13.89930 -13.82020 -13.69236 -13.28788 -13.01930 -12.85405 -12.48033 -12.34538 -12.23970 -12.11364 -11.98551 -11.92629 -11.47021 -11.40124 -11.05718 -10.97863 -10.66618 -10.40559 -9.95220 -9.70253 -8.68202 -8.34313 -6.36549 -0.47434 0.43022 0.47786 1.16681 1.23087 1.29087 1.36233 1.48970 1.57864 1.85200 2.03601 2.24256 2.79191 2.83455 2.94049 3.14623 3.45036 3.64509 3.82775 3.83884 3.99241 4.04229 4.10949 4.26560 4.27274 4.29671 4.31735 4.37730 4.43867 4.53726 4.57639 4.62331 4.66711 4.82915 4.95093 5.08710 5.22531 5.23577 5.33933 5.34562 5.54216 5.54403 5.60257 5.84885 6.22709 6.40525 6.64833 6.75766 7.25306 8.81572 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.001882 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.628696 B =14871.152439 C =15284.610542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.279 3.721 3 C -0.041 4.041 4 C -0.069 4.069 5 C -0.106 4.106 6 C -0.047 4.047 7 C -0.058 4.058 8 S -0.220 6.220 9 C -0.095 4.095 10 C 0.465 3.535 11 O -0.532 6.532 12 O -0.333 6.333 13 C 0.073 3.927 14 C -0.021 4.021 15 C -0.478 4.478 16 H 0.047 0.953 17 C 0.020 3.980 18 N -0.937 5.937 19 Si 0.917 3.083 20 H -0.266 1.266 21 H -0.298 1.298 22 H -0.228 1.228 23 C 0.049 3.951 24 O -0.392 6.392 25 C 0.024 3.976 26 C -0.102 4.102 27 C -0.067 4.067 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.151 0.849 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.266 0.734 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.155 0.845 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.716 0.571 11.728 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.035 4.035 3 C -0.045 4.045 4 C -0.089 4.089 5 C -0.126 4.126 6 C -0.049 4.049 7 C -0.205 4.205 8 S 0.009 5.991 9 C -0.242 4.242 10 C 0.308 3.692 11 O -0.423 6.423 12 O -0.248 6.248 13 C -0.001 4.001 14 C -0.022 4.022 15 C -0.515 4.515 16 H 0.066 0.934 17 C -0.178 4.178 18 N -0.576 5.576 19 Si 0.744 3.256 20 H -0.192 1.192 21 H -0.226 1.226 22 H -0.152 1.152 23 C -0.027 4.027 24 O -0.311 6.311 25 C -0.053 4.053 26 C -0.122 4.122 27 C -0.088 4.088 28 H 0.165 0.835 29 H 0.167 0.833 30 H 0.132 0.868 31 H 0.139 0.861 32 H 0.156 0.844 33 H 0.169 0.831 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.173 0.827 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.804 1.412 10.719 23.446 hybrid contribution 1.087 -0.904 -0.511 1.503 sum -19.717 0.509 10.208 22.209 Atomic orbital electron populations 1.81293 1.13541 1.09834 1.09806 1.26005 0.92893 0.92306 0.92304 1.16154 0.83177 1.02702 1.02464 1.21335 0.94273 0.96749 0.96574 1.21239 0.93597 0.99310 0.98434 1.19585 0.93366 0.96025 0.95922 1.22588 0.94350 1.01565 1.02003 1.87941 1.00554 1.54257 1.56392 1.23138 0.95526 1.02346 1.03231 1.23351 0.81511 0.81757 0.82536 1.90652 1.65174 1.46785 1.39641 1.86591 1.21555 1.54854 1.61795 1.23676 0.94968 0.88305 0.93183 1.21649 0.90103 0.95698 0.94770 1.20422 1.41562 0.96458 0.93082 0.93436 1.25714 0.94421 0.95794 1.01861 1.69996 1.43377 1.19317 1.24945 0.86455 0.80138 0.79228 0.79822 1.19243 1.22578 1.15195 1.24171 0.89638 0.95873 0.92994 1.89555 1.35079 1.88255 1.18212 1.24377 0.91795 0.97532 0.91548 1.21254 0.93507 0.98295 0.99146 1.21366 0.94325 0.96445 0.96632 0.83504 0.83292 0.86840 0.86149 0.84393 0.83072 0.92637 0.90078 0.92454 0.88021 0.89857 0.91581 0.87853 0.82699 0.83196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.34 18.54 19.00 0.35 -9.99 16 2 C 0.28 4.59 15.33 88.33 1.35 5.94 16 3 C -0.04 -0.47 5.73 -21.36 -0.12 -0.59 16 4 C -0.07 -0.68 9.76 22.54 0.22 -0.46 16 5 C -0.11 -1.02 9.68 22.23 0.22 -0.81 16 6 C -0.05 -0.46 5.15 -19.80 -0.10 -0.56 16 7 C -0.06 -0.56 6.06 71.24 0.43 -0.12 16 8 S -0.22 -4.36 20.87 -56.49 -1.18 -5.54 16 9 C -0.09 -1.98 6.54 71.24 0.47 -1.51 16 10 C 0.47 15.01 7.96 71.24 0.57 15.57 16 11 O -0.53 -20.00 15.54 21.96 0.34 -19.66 16 12 O -0.33 -12.39 9.63 -51.42 -0.50 -12.88 16 13 C 0.07 2.77 4.82 71.98 0.35 3.11 16 14 C -0.02 -0.89 0.57 -52.23 -0.03 -0.92 16 15 C -0.48 -25.29 8.43 25.60 0.22 -25.07 16 16 H 0.05 2.81 8.06 -2.91 -0.02 2.78 16 17 C 0.02 1.12 5.43 84.66 0.46 1.58 16 18 N -0.94 -56.15 13.96 21.45 0.30 -55.85 16 19 Si 0.92 41.82 23.79 68.60 1.63 43.45 16 20 H -0.27 -11.68 6.78 99.48 0.67 -11.00 16 21 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 22 H -0.23 -9.27 4.72 99.48 0.47 -8.80 16 23 C 0.05 1.80 8.34 72.27 0.60 2.41 16 24 O -0.39 -16.44 12.40 -148.98 -1.85 -18.29 16 25 C 0.02 0.95 6.53 72.27 0.47 1.42 16 26 C -0.10 -0.86 9.68 22.23 0.22 -0.64 16 27 C -0.07 -0.60 9.76 22.54 0.22 -0.38 16 28 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 29 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 30 H 0.11 0.80 8.08 -2.39 -0.02 0.78 16 31 H 0.12 0.66 8.08 -2.39 -0.02 0.64 16 32 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.06 2.27 5.50 -2.39 -0.01 2.25 16 35 H 0.08 2.58 7.89 -2.39 -0.02 2.56 16 36 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.10 2.87 7.93 -2.39 -0.02 2.85 16 38 H 0.08 3.07 8.09 -2.38 -0.02 3.05 16 39 H 0.07 2.86 3.82 -2.39 -0.01 2.85 16 40 H 0.10 3.28 8.10 -2.39 -0.02 3.26 16 41 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 42 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -74.62 375.46 5.42 -69.20 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.79 Total: 10.59 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 5.53 Total: -1.04 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: 0.65 Total: -65.84 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -2.00 Total: -50.83 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.63 Total: 43.45 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -1.18 Total: -5.54 kcal Total: -74.62 5.42 -69.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646886935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.962 kcal (2) G-P(sol) polarization free energy of solvation -74.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds