Wall clock time and date at job start Wed Apr 1 2020 04:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48503 * 109.47106 * 240.00131 * 3 2 1 5 5 H 1.48496 * 109.47055 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47069 * 120.00034 * 3 2 1 7 7 C 1.37878 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99719 * 185.20602 * 7 2 1 9 9 C 1.50695 * 120.00392 * 5.20815 * 7 2 1 10 10 C 1.53000 * 112.99878 * 65.15673 * 9 7 2 11 11 O 1.45206 * 109.46982 * 62.81482 * 10 9 7 12 12 C 1.34232 * 116.99673 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00371 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99449 * 180.02562 * 12 11 10 15 15 H 1.08998 * 109.11985 * 42.27902 * 14 12 11 16 16 C 1.53677 * 109.13548 * 283.19331 * 14 12 11 17 17 S 1.82212 * 103.25886 * 239.53452 * 16 14 12 18 18 C 1.76759 * 95.66795 * 0.02562 * 17 16 14 19 19 C 1.48079 * 125.01075 * 180.02562 * 18 17 16 20 20 C 1.39457 * 120.13291 * 179.70403 * 19 18 17 21 21 C 1.37987 * 119.86594 * 179.71740 * 20 19 18 22 22 C 1.38339 * 120.13087 * 0.55539 * 21 20 19 23 23 C 1.38339 * 120.26768 * 359.71882 * 22 21 20 24 24 C 1.37985 * 120.13432 * 359.97438 * 23 22 21 25 25 N 1.28384 * 109.97375 * 0.02562 * 18 17 16 26 26 C 1.54028 * 113.81938 * 196.98655 * 9 7 2 27 27 O 1.44445 * 85.42677 * 91.80911 * 26 9 7 28 28 C 1.44175 * 93.38191 * 24.08844 * 27 26 9 29 29 H 0.97004 * 119.99972 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47004 * 302.81611 * 10 9 7 31 31 H 1.08995 * 109.47412 * 182.81735 * 10 9 7 32 32 H 1.08995 * 110.66139 * 357.97823 * 16 14 12 33 33 H 1.08999 * 110.65760 * 121.09463 * 16 14 12 34 34 H 1.08000 * 120.06531 * 359.97438 * 20 19 18 35 35 H 1.08000 * 119.93437 * 180.27468 * 21 20 19 36 36 H 1.07998 * 119.86600 * 179.74110 * 22 21 20 37 37 H 1.08001 * 119.93151 * 179.97438 * 23 22 21 38 38 H 1.08002 * 120.06930 * 180.02562 * 24 23 22 39 39 H 1.09004 * 113.86531 * 205.91260 * 26 9 7 40 40 H 1.09000 * 113.86683 * 337.61696 * 26 9 7 41 41 H 1.08996 * 113.86923 * 221.77090 * 28 27 26 42 42 H 1.08999 * 113.86731 * 90.06057 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0812 -1.1960 0.0843 9 6 1.2557 -2.4964 -0.1196 10 6 0.5478 -2.6580 -1.4663 11 8 1.5339 -2.6802 -2.5319 12 6 1.0735 -2.8165 -3.7854 13 8 -0.1141 -2.9136 -3.9857 14 6 2.0380 -2.8484 -4.9429 15 1 2.8963 -3.4648 -4.6756 16 6 2.5191 -1.4189 -5.2374 17 16 1.9987 -1.1499 -6.9628 18 6 1.2642 -2.7437 -7.1740 19 6 0.6135 -3.2215 -8.4155 20 6 0.0706 -4.5048 -8.4721 21 6 -0.5395 -4.9423 -9.6298 22 6 -0.6032 -4.1149 -10.7366 23 6 -0.0614 -2.8429 -10.6884 24 6 0.5457 -2.3919 -9.5343 25 7 1.3779 -3.4259 -6.0924 26 6 2.0789 -3.7281 0.3021 27 8 1.5104 -3.5153 1.6128 28 6 0.3625 -2.8136 1.0947 29 1 -0.4850 0.8401 0.0004 30 1 -0.1350 -1.8224 -1.6204 31 1 -0.0141 -3.5920 -1.4717 32 1 2.0323 -0.7048 -4.5731 33 1 3.6033 -1.3519 -5.1478 34 1 0.1240 -5.1534 -7.6102 35 1 -0.9643 -5.9343 -9.6734 36 1 -1.0781 -4.4632 -11.6419 37 1 -0.1138 -2.2016 -11.5558 38 1 0.9680 -1.3985 -9.4977 39 1 1.7589 -4.6559 -0.1721 40 1 3.1571 -3.5743 0.2573 41 1 0.0821 -1.9360 1.6771 42 1 -0.4829 -3.4614 0.8630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646888212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:53 Heat of formation + Delta-G solvation = -55.444090 kcal Electronic energy + Delta-G solvation = -27363.105739 eV Core-core repulsion = 23400.648653 eV Total energy + Delta-G solvation = -3962.457085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.86550 -40.98585 -40.23774 -38.72680 -37.34436 -34.95893 -33.80990 -31.99755 -31.89686 -30.86141 -27.71918 -27.21821 -26.94796 -26.04123 -24.60329 -23.57317 -22.28450 -21.03704 -20.85858 -19.16769 -19.02069 -18.39811 -17.90840 -17.46399 -17.30311 -16.90875 -16.42524 -16.28412 -16.18363 -16.06158 -15.85991 -15.54726 -14.92448 -14.61618 -14.42850 -14.33681 -14.27292 -13.99215 -13.85811 -13.74513 -13.49498 -12.87921 -12.84666 -12.68499 -12.47122 -12.39320 -12.26676 -12.05955 -11.94135 -11.85490 -11.41770 -11.32946 -10.99144 -10.72827 -10.69669 -10.25225 -9.94450 -9.79110 -9.17955 -8.22095 -6.31765 -0.46796 0.10662 0.42459 0.62063 0.91727 1.03408 1.41266 1.42277 1.49374 1.68286 2.37871 2.60671 2.84393 2.96209 2.97071 3.18809 3.42484 3.70536 3.92244 3.96309 4.05026 4.08810 4.18573 4.19572 4.26430 4.32853 4.40348 4.43574 4.49964 4.53793 4.55899 4.69182 4.89243 5.08102 5.09143 5.17192 5.39396 5.43187 5.44939 5.46201 5.51041 5.52538 5.69115 5.95110 6.09544 6.18352 6.62647 6.68610 7.34906 8.84327 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.002777 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.962078 B =10081.706013 C =11124.022828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.020 3.980 10 C 0.094 3.906 11 O -0.332 6.332 12 C 0.462 3.538 13 O -0.533 6.533 14 C 0.088 3.912 15 H 0.170 0.830 16 C -0.107 4.107 17 S -0.173 6.173 18 C 0.256 3.744 19 C -0.072 4.072 20 C -0.080 4.080 21 C -0.128 4.128 22 C -0.088 4.088 23 C -0.122 4.122 24 C -0.088 4.088 25 N -0.525 5.525 26 C 0.040 3.960 27 O -0.402 6.402 28 C 0.054 3.946 29 H 0.264 0.736 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.163 0.837 34 H 0.122 0.878 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 -6.262 -22.451 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.019 3.981 10 C 0.020 3.980 11 O -0.247 6.247 12 C 0.304 3.696 13 O -0.423 6.423 14 C -0.027 4.027 15 H 0.187 0.813 16 C -0.257 4.257 17 S 0.058 5.942 18 C -0.040 4.040 19 C -0.076 4.076 20 C -0.101 4.101 21 C -0.146 4.146 22 C -0.107 4.107 23 C -0.140 4.140 24 C -0.108 4.108 25 N -0.240 5.240 26 C -0.037 4.037 27 O -0.322 6.322 28 C -0.023 4.023 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.181 0.819 34 H 0.140 0.860 35 H 0.170 0.830 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.455 -6.033 -22.387 23.315 hybrid contribution -0.044 0.833 1.365 1.600 sum 2.412 -5.200 -21.022 21.790 Atomic orbital electron populations 1.69978 1.07019 1.27812 1.50019 1.25641 0.95626 1.02172 0.94220 0.85700 0.78523 0.78965 0.79129 1.19072 1.21300 1.19695 1.20809 0.93288 0.89487 1.50523 0.91880 1.21165 0.93290 0.95157 0.88470 1.23249 0.89879 0.99299 0.85557 1.86483 1.41775 1.81606 1.14817 1.23658 0.88551 0.72389 0.85041 1.90625 1.19331 1.46208 1.86099 1.22073 0.96042 0.96165 0.88392 0.81348 1.24946 1.08867 0.97268 0.94631 1.86424 1.70069 1.22386 1.15281 1.25918 0.92604 0.90733 0.94714 1.18127 1.03191 0.96447 0.89874 1.21406 0.95502 0.94033 0.99205 1.21471 0.99160 1.01633 0.92305 1.21810 0.96436 0.93333 0.99134 1.21467 0.97560 0.97056 0.97875 1.21414 0.98105 0.99195 0.92086 1.70192 1.19401 1.34710 0.99740 1.24187 0.99795 0.97287 0.82415 1.89509 1.37575 1.77810 1.27262 1.23819 0.88862 0.94152 0.95465 0.92690 0.92618 0.93527 0.87926 0.81947 0.86006 0.83036 0.82110 0.82239 0.84860 0.90219 0.89278 0.90623 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.61 11.22 21.45 0.24 -49.37 16 2 C 0.02 1.24 5.24 84.66 0.44 1.68 16 3 Si 0.95 41.74 29.54 68.60 2.03 43.76 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.50 -26.05 8.13 25.60 0.21 -25.84 16 8 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 9 C 0.02 0.94 0.56 -52.23 -0.03 0.91 16 10 C 0.09 4.39 4.63 71.98 0.33 4.72 16 11 O -0.33 -14.07 10.01 -51.44 -0.51 -14.59 16 12 C 0.46 18.33 6.91 71.24 0.49 18.83 16 13 O -0.53 -24.86 16.26 21.96 0.36 -24.51 16 14 C 0.09 2.64 3.96 44.83 0.18 2.82 16 15 H 0.17 4.06 8.14 -2.39 -0.02 4.04 16 16 C -0.11 -2.82 7.08 72.21 0.51 -2.30 16 17 S -0.17 -4.47 22.19 -56.49 -1.25 -5.72 16 18 C 0.26 7.21 7.37 87.81 0.65 7.85 16 19 C -0.07 -1.73 5.87 -20.08 -0.12 -1.84 16 20 C -0.08 -1.74 9.67 22.50 0.22 -1.53 16 21 C -0.13 -1.91 10.03 22.23 0.22 -1.69 16 22 C -0.09 -1.01 10.04 22.32 0.22 -0.78 16 23 C -0.12 -1.55 10.03 22.23 0.22 -1.33 16 24 C -0.09 -1.62 9.60 22.50 0.22 -1.40 16 25 N -0.53 -16.55 9.49 -323.33 -3.07 -19.62 16 26 C 0.04 1.63 8.34 72.29 0.60 2.24 16 27 O -0.40 -18.65 12.41 -148.98 -1.85 -20.50 16 28 C 0.05 2.54 7.92 72.30 0.57 3.11 16 29 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 30 H 0.06 2.97 6.96 -2.39 -0.02 2.96 16 31 H 0.05 2.06 8.12 -2.39 -0.02 2.04 16 32 H 0.10 3.14 7.66 -2.39 -0.02 3.12 16 33 H 0.16 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.12 2.93 7.80 -2.91 -0.02 2.91 16 35 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 37 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.13 2.28 7.27 -2.91 -0.02 2.26 16 39 H 0.08 2.88 8.10 -2.38 -0.02 2.86 16 40 H 0.09 3.47 8.08 -2.39 -0.02 3.45 16 41 H 0.08 3.89 7.43 -2.39 -0.02 3.87 16 42 H 0.07 2.82 8.09 -2.39 -0.02 2.81 16 Total: -1.00 -67.38 373.90 1.93 -65.45 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 1.04 Total: 19.64 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 4.94 Total: 5.44 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -2.83 Total: -68.99 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -2.01 Total: -59.59 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: -4.47 SS G_CDS: -1.25 Total: -5.72 kcal Total: -67.38 1.93 -65.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646888212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.010 kcal (2) G-P(sol) polarization free energy of solvation -67.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds