Wall clock time and date at job start Wed Apr 1 2020 04:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.94501 * 2 1 4 4 C 1.38128 * 120.05515 * 180.25302 * 3 2 1 5 5 C 1.38748 * 119.94193 * 359.49343 * 4 3 2 6 6 O 1.35904 * 120.05891 * 180.27327 * 5 4 3 7 7 C 1.38719 * 119.89098 * 0.25633 * 5 4 3 8 8 C 1.50699 * 120.02802 * 180.02562 * 7 5 4 9 9 N 1.46494 * 109.47493 * 284.99963 * 8 7 5 10 10 S 1.65599 * 120.00394 * 165.00069 * 9 8 7 11 11 O 1.42103 * 106.40549 * 178.54423 * 10 9 8 12 12 O 1.42109 * 106.40049 * 311.46035 * 10 9 8 13 13 C 1.76192 * 107.21761 * 64.99887 * 10 9 8 14 14 C 1.38638 * 119.75071 * 269.72886 * 13 10 9 15 15 C 1.37617 * 120.24934 * 179.72051 * 14 13 10 16 16 C 1.40718 * 119.74501 * 0.57529 * 15 14 13 17 17 C 1.41389 * 120.24517 * 179.68316 * 16 15 14 18 18 H 1.08002 * 119.99671 * 204.39773 * 17 16 15 19 19 C 1.39945 * 120.00449 * 24.39967 * 17 16 15 20 20 N 1.30822 * 119.99834 * 17.85346 * 19 17 16 21 21 Si 1.86799 * 120.00104 * 197.85944 * 19 17 16 22 22 H 1.48501 * 109.47266 * 359.97438 * 21 19 17 23 23 H 1.48509 * 109.46797 * 119.99672 * 21 19 17 24 24 H 1.48496 * 109.47033 * 239.99448 * 21 19 17 25 25 C 1.40717 * 119.50802 * 359.69982 * 16 15 14 26 26 C 1.37621 * 119.74835 * 0.02562 * 25 16 15 27 27 C 1.38164 * 119.94294 * 359.97438 * 7 5 4 28 28 H 1.08998 * 109.46992 * 270.24853 * 1 2 3 29 29 H 1.08997 * 109.47054 * 30.25070 * 1 2 3 30 30 H 1.09000 * 109.46999 * 150.25084 * 1 2 3 31 31 H 1.07995 * 119.97215 * 0.02892 * 3 2 1 32 32 H 1.07997 * 120.02567 * 179.77607 * 4 3 2 33 33 H 0.96693 * 113.99494 * 89.99919 * 6 5 4 34 34 H 1.09005 * 109.46998 * 45.00031 * 8 7 5 35 35 H 1.09000 * 109.47253 * 164.99358 * 8 7 5 36 36 H 0.97003 * 119.99929 * 345.00160 * 9 8 7 37 37 H 1.08003 * 119.87502 * 359.97438 * 14 13 10 38 38 H 1.07996 * 120.13064 * 180.27985 * 15 14 13 39 39 H 0.97002 * 120.00045 * 180.02562 * 20 19 17 40 40 H 1.08007 * 120.12670 * 179.97438 * 25 16 15 41 41 H 1.08000 * 119.87520 * 180.02562 * 26 25 16 42 42 H 1.07996 * 119.97136 * 179.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5786 1.2009 -0.0053 5 6 4.2734 0.0000 0.0000 6 8 5.6325 -0.0001 0.0005 7 6 3.5787 -1.2007 0.0053 8 6 4.3303 -2.5068 0.0117 9 7 4.8843 -2.7581 -1.3210 10 16 6.0557 -3.9103 -1.5271 11 8 6.3536 -3.9357 -2.9164 12 8 7.0356 -3.6698 -0.5264 13 6 5.3272 -5.4686 -1.1458 14 6 5.3762 -5.9516 0.1528 15 6 4.8056 -7.1648 0.4633 16 6 4.1813 -7.9213 -0.5458 17 6 3.5975 -9.1722 -0.2399 18 1 3.4779 -9.9159 -1.0139 19 6 3.1746 -9.4466 1.0656 20 7 2.9889 -8.4670 1.9125 21 14 2.8754 -11.2117 1.5988 22 1 3.1546 -12.1262 0.4626 23 1 3.7725 -11.5444 2.7346 24 1 1.4610 -11.3676 2.0231 25 6 4.1426 -7.4237 -1.8615 26 6 4.7148 -6.2053 -2.1479 27 6 2.1970 -1.1980 0.0057 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6560 2.1327 0.0005 32 1 4.1172 2.1370 -0.0089 33 1 6.0254 0.0036 0.8840 34 1 5.1410 -2.4560 0.7385 35 1 3.6510 -3.3156 0.2812 36 1 4.5650 -2.2494 -2.0828 37 1 5.8605 -5.3716 0.9246 38 1 4.8409 -7.5371 1.4764 39 1 2.6962 -8.6573 2.8175 40 1 3.6664 -7.9962 -2.6438 41 1 4.6860 -5.8213 -3.1569 42 1 1.6557 -2.1324 0.0094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664553991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:04 Heat of formation + Delta-G solvation = -89.910472 kcal Electronic energy + Delta-G solvation = -27460.553182 eV Core-core repulsion = 23496.601522 eV Total energy + Delta-G solvation = -3963.951660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.10238 -37.57450 -36.98435 -36.44257 -35.18499 -35.04366 -34.04279 -31.82939 -31.03907 -30.25687 -29.46502 -26.53831 -25.82376 -25.57644 -22.44971 -21.51612 -21.14808 -20.83814 -18.88289 -18.38281 -17.62312 -17.05382 -16.61972 -16.24385 -15.93511 -15.51009 -15.38076 -14.85865 -14.30881 -14.13133 -13.94630 -13.62842 -13.43196 -13.25335 -13.15601 -13.05293 -12.73927 -12.40474 -12.18820 -12.09525 -11.78912 -11.77441 -11.54745 -11.43863 -11.30918 -11.25806 -11.21682 -11.17103 -10.90704 -10.44872 -10.39225 -9.76228 -9.63731 -9.51351 -9.10223 -8.93788 -8.51067 -7.96076 -7.70440 -7.15738 -4.80667 0.98684 1.14383 1.43113 2.24987 2.86896 2.89537 2.92463 2.94689 3.41305 3.65701 3.88411 4.16675 4.26144 4.52114 4.61298 4.69419 4.74576 5.12812 5.14791 5.22685 5.37943 5.42658 5.45318 5.51380 5.58369 5.75359 5.88690 5.92749 6.06900 6.11193 6.12407 6.21205 6.39882 6.44628 6.67463 6.70181 6.70839 6.91648 7.04906 7.33018 7.38332 7.43228 7.62360 7.63585 7.76978 7.96607 8.31473 8.50995 8.64729 9.75715 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.003135 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.466025 B = 8930.396634 C =10435.732830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.103 4.103 4 C -0.147 4.147 5 C 0.117 3.883 6 O -0.491 6.491 7 C -0.115 4.115 8 C 0.170 3.830 9 N -1.116 6.116 10 S 2.696 3.304 11 O -0.987 6.987 12 O -0.983 6.983 13 C -0.788 4.788 14 C -0.017 4.017 15 C -0.183 4.183 16 C 0.139 3.861 17 C -0.435 4.435 18 H 0.088 0.912 19 C 0.073 3.927 20 N -0.766 5.766 21 Si 0.916 3.084 22 H -0.257 1.257 23 H -0.267 1.267 24 H -0.270 1.270 25 C -0.239 4.239 26 C 0.003 3.997 27 C -0.087 4.087 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.390 0.610 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.410 0.590 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.288 0.712 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 13.985 2.005 15.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.122 4.122 4 C -0.166 4.166 5 C 0.072 3.928 6 O -0.301 6.301 7 C -0.117 4.117 8 C 0.044 3.956 9 N -0.872 5.872 10 S 2.795 3.205 11 O -0.977 6.977 12 O -0.974 6.974 13 C -0.883 4.883 14 C -0.038 4.038 15 C -0.203 4.203 16 C 0.136 3.864 17 C -0.463 4.463 18 H 0.106 0.894 19 C -0.149 4.149 20 N -0.389 5.389 21 Si 0.739 3.261 22 H -0.180 1.180 23 H -0.192 1.192 24 H -0.195 1.195 25 C -0.260 4.260 26 C -0.017 4.017 27 C -0.106 4.106 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.247 0.753 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.243 0.757 37 H 0.121 0.879 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.230 14.137 1.543 14.837 hybrid contribution -0.869 -0.930 0.736 1.470 sum -5.099 13.207 2.278 14.339 Atomic orbital electron populations 1.20780 0.90945 1.02894 1.02390 1.19937 0.96321 0.92943 1.00744 1.20909 0.93507 0.97653 1.00106 1.21392 0.94541 0.97704 1.02921 1.18356 0.83252 0.91561 0.99618 1.84863 1.15485 1.96343 1.33411 1.20304 0.94006 0.94717 1.02657 1.19892 0.97486 0.93484 0.84710 1.55653 1.61258 1.55866 1.14418 1.01156 0.73160 0.73565 0.72658 1.93487 1.83478 1.87684 1.33088 1.93471 1.57113 1.85682 1.61096 1.29212 1.33488 1.23304 1.02346 1.20266 0.94670 0.96007 0.92829 1.21336 1.02581 0.96213 1.00171 1.17855 0.86098 0.91319 0.91153 1.19970 1.31882 0.99621 0.94792 0.89432 1.26126 0.92713 0.99970 0.96121 1.69820 1.28959 1.33852 1.06251 0.86117 0.78887 0.81305 0.79774 1.17988 1.19222 1.19546 1.21055 1.09733 0.97909 0.97288 1.20171 0.91844 0.94119 0.95610 1.21006 0.92834 0.98224 0.98548 0.91140 0.91638 0.91276 0.85821 0.85463 0.75314 0.89904 0.90523 0.75715 0.87902 0.85974 0.90077 0.88224 0.87800 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.10 -1.00 5.88 -104.60 -0.62 -1.61 16 3 C -0.10 -0.98 9.70 -39.60 -0.38 -1.36 16 4 C -0.15 -1.52 9.99 -39.43 -0.39 -1.91 16 5 C 0.12 1.42 6.68 -39.22 -0.26 1.16 16 6 O -0.49 -5.95 12.84 -19.44 -0.25 -6.20 16 7 C -0.11 -1.46 5.29 -104.47 -0.55 -2.01 16 8 C 0.17 2.46 5.96 -5.20 -0.03 2.43 16 9 N -1.12 -17.80 5.99 -11.66 -0.07 -17.87 16 10 S 2.70 53.16 5.73 -107.50 -0.62 52.54 16 11 O -0.99 -21.59 17.26 -57.17 -0.99 -22.58 16 12 O -0.98 -21.21 16.72 -57.17 -0.96 -22.17 16 13 C -0.79 -17.34 5.97 -39.29 -0.23 -17.57 16 14 C -0.02 -0.40 9.49 -39.66 -0.38 -0.77 16 15 C -0.18 -4.51 8.70 -38.87 -0.34 -4.84 16 16 C 0.14 3.50 5.57 -106.83 -0.60 2.91 16 17 C -0.44 -10.59 9.05 -37.74 -0.34 -10.93 16 18 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16 19 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 20 N -0.77 -17.83 10.95 55.55 0.61 -17.22 16 21 Si 0.92 16.84 29.60 -169.99 -5.03 11.81 16 22 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 23 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 24 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 25 C -0.24 -5.65 9.80 -38.87 -0.38 -6.03 16 26 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 27 C -0.09 -1.01 9.32 -39.60 -0.37 -1.38 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.39 3.10 9.06 45.56 0.41 3.51 16 34 H 0.08 1.18 7.62 -51.93 -0.40 0.78 16 35 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 36 H 0.41 5.96 8.64 -34.47 -0.30 5.66 16 37 H 0.10 2.16 7.59 -52.48 -0.40 1.76 16 38 H 0.12 3.04 6.15 -52.49 -0.32 2.72 16 39 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 40 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 41 H 0.10 2.13 7.60 -52.49 -0.40 1.73 16 42 H 0.13 1.44 8.00 -52.49 -0.42 1.02 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -31.34 373.75 -10.96 -42.30 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -4.31 Total: 14.95 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: -4.98 Total: -41.21 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.54 Total: -35.09 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -2.19 Total: -50.94 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 16 Polarization: 53.16 SS G_CDS: -0.62 Total: 52.54 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.34 -10.96 -42.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664553991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.607 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds