Wall clock time and date at job start Wed Apr 1 2020 04:22:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38287 * 119.94501 * 2 1
4 4 C 1.38128 * 120.05515 * 180.25302 * 3 2 1
5 5 C 1.38748 * 119.94193 * 359.49343 * 4 3 2
6 6 O 1.35904 * 120.05891 * 180.27327 * 5 4 3
7 7 C 1.38719 * 119.89098 * 0.25633 * 5 4 3
8 8 C 1.50699 * 120.02802 * 180.02562 * 7 5 4
9 9 N 1.46494 * 109.47493 * 284.99963 * 8 7 5
10 10 S 1.65599 * 120.00394 * 165.00069 * 9 8 7
11 11 O 1.42103 * 106.40549 * 178.54423 * 10 9 8
12 12 O 1.42109 * 106.40049 * 311.46035 * 10 9 8
13 13 C 1.76192 * 107.21761 * 64.99887 * 10 9 8
14 14 C 1.38638 * 119.75071 * 269.72886 * 13 10 9
15 15 C 1.37617 * 120.24934 * 179.72051 * 14 13 10
16 16 C 1.40718 * 119.74501 * 0.57529 * 15 14 13
17 17 C 1.41389 * 120.24517 * 179.68316 * 16 15 14
18 18 H 1.08002 * 119.99671 * 204.39773 * 17 16 15
19 19 C 1.39945 * 120.00449 * 24.39967 * 17 16 15
20 20 N 1.30822 * 119.99834 * 17.85346 * 19 17 16
21 21 Si 1.86799 * 120.00104 * 197.85944 * 19 17 16
22 22 H 1.48501 * 109.47266 * 359.97438 * 21 19 17
23 23 H 1.48509 * 109.46797 * 119.99672 * 21 19 17
24 24 H 1.48496 * 109.47033 * 239.99448 * 21 19 17
25 25 C 1.40717 * 119.50802 * 359.69982 * 16 15 14
26 26 C 1.37621 * 119.74835 * 0.02562 * 25 16 15
27 27 C 1.38164 * 119.94294 * 359.97438 * 7 5 4
28 28 H 1.08998 * 109.46992 * 270.24853 * 1 2 3
29 29 H 1.08997 * 109.47054 * 30.25070 * 1 2 3
30 30 H 1.09000 * 109.46999 * 150.25084 * 1 2 3
31 31 H 1.07995 * 119.97215 * 0.02892 * 3 2 1
32 32 H 1.07997 * 120.02567 * 179.77607 * 4 3 2
33 33 H 0.96693 * 113.99494 * 89.99919 * 6 5 4
34 34 H 1.09005 * 109.46998 * 45.00031 * 8 7 5
35 35 H 1.09000 * 109.47253 * 164.99358 * 8 7 5
36 36 H 0.97003 * 119.99929 * 345.00160 * 9 8 7
37 37 H 1.08003 * 119.87502 * 359.97438 * 14 13 10
38 38 H 1.07996 * 120.13064 * 180.27985 * 15 14 13
39 39 H 0.97002 * 120.00045 * 180.02562 * 20 19 17
40 40 H 1.08007 * 120.12670 * 179.97438 * 25 16 15
41 41 H 1.08000 * 119.87520 * 180.02562 * 26 25 16
42 42 H 1.07996 * 119.97136 * 179.97438 * 27 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1973 1.1983 0.0000
4 6 3.5786 1.2009 -0.0053
5 6 4.2734 0.0000 0.0000
6 8 5.6325 -0.0001 0.0005
7 6 3.5787 -1.2007 0.0053
8 6 4.3303 -2.5068 0.0117
9 7 4.8843 -2.7581 -1.3210
10 16 6.0557 -3.9103 -1.5271
11 8 6.3536 -3.9357 -2.9164
12 8 7.0356 -3.6698 -0.5264
13 6 5.3272 -5.4686 -1.1458
14 6 5.3762 -5.9516 0.1528
15 6 4.8056 -7.1648 0.4633
16 6 4.1813 -7.9213 -0.5458
17 6 3.5975 -9.1722 -0.2399
18 1 3.4779 -9.9159 -1.0139
19 6 3.1746 -9.4466 1.0656
20 7 2.9889 -8.4670 1.9125
21 14 2.8754 -11.2117 1.5988
22 1 3.1546 -12.1262 0.4626
23 1 3.7725 -11.5444 2.7346
24 1 1.4610 -11.3676 2.0231
25 6 4.1426 -7.4237 -1.8615
26 6 4.7148 -6.2053 -2.1479
27 6 2.1970 -1.1980 0.0057
28 1 -0.3633 0.0045 1.0276
29 1 -0.3633 0.8877 -0.5177
30 1 -0.3633 -0.8922 -0.5099
31 1 1.6560 2.1327 0.0005
32 1 4.1172 2.1370 -0.0089
33 1 6.0254 0.0036 0.8840
34 1 5.1410 -2.4560 0.7385
35 1 3.6510 -3.3156 0.2812
36 1 4.5650 -2.2494 -2.0828
37 1 5.8605 -5.3716 0.9246
38 1 4.8409 -7.5371 1.4764
39 1 2.6962 -8.6573 2.8175
40 1 3.6664 -7.9962 -2.6438
41 1 4.6860 -5.8213 -3.1569
42 1 1.6557 -2.1324 0.0094
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001664553991.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:22:04
Heat of formation + Delta-G solvation = -89.910472 kcal
Electronic energy + Delta-G solvation = -27460.553182 eV
Core-core repulsion = 23496.601522 eV
Total energy + Delta-G solvation = -3963.951660 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.102 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.10238 -37.57450 -36.98435 -36.44257 -35.18499 -35.04366 -34.04279 -31.82939
-31.03907 -30.25687 -29.46502 -26.53831 -25.82376 -25.57644 -22.44971 -21.51612
-21.14808 -20.83814 -18.88289 -18.38281 -17.62312 -17.05382 -16.61972 -16.24385
-15.93511 -15.51009 -15.38076 -14.85865 -14.30881 -14.13133 -13.94630 -13.62842
-13.43196 -13.25335 -13.15601 -13.05293 -12.73927 -12.40474 -12.18820 -12.09525
-11.78912 -11.77441 -11.54745 -11.43863 -11.30918 -11.25806 -11.21682 -11.17103
-10.90704 -10.44872 -10.39225 -9.76228 -9.63731 -9.51351 -9.10223 -8.93788
-8.51067 -7.96076 -7.70440 -7.15738 -4.80667 0.98684 1.14383 1.43113
2.24987 2.86896 2.89537 2.92463 2.94689 3.41305 3.65701 3.88411
4.16675 4.26144 4.52114 4.61298 4.69419 4.74576 5.12812 5.14791
5.22685 5.37943 5.42658 5.45318 5.51380 5.58369 5.75359 5.88690
5.92749 6.06900 6.11193 6.12407 6.21205 6.39882 6.44628 6.67463
6.70181 6.70839 6.91648 7.04906 7.33018 7.38332 7.43228 7.62360
7.63585 7.76978 7.96607 8.31473 8.50995 8.64729 9.75715
Molecular weight = 347.10amu
Principal moments of inertia in cm(-1)
A = 0.011647 B = 0.003135 C = 0.002682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2403.466025 B = 8930.396634 C =10435.732830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.099 4.099
3 C -0.103 4.103
4 C -0.147 4.147
5 C 0.117 3.883
6 O -0.491 6.491
7 C -0.115 4.115
8 C 0.170 3.830
9 N -1.116 6.116
10 S 2.696 3.304
11 O -0.987 6.987
12 O -0.983 6.983
13 C -0.788 4.788
14 C -0.017 4.017
15 C -0.183 4.183
16 C 0.139 3.861
17 C -0.435 4.435
18 H 0.088 0.912
19 C 0.073 3.927
20 N -0.766 5.766
21 Si 0.916 3.084
22 H -0.257 1.257
23 H -0.267 1.267
24 H -0.270 1.270
25 C -0.239 4.239
26 C 0.003 3.997
27 C -0.087 4.087
28 H 0.070 0.930
29 H 0.065 0.935
30 H 0.068 0.932
31 H 0.124 0.876
32 H 0.127 0.873
33 H 0.390 0.610
34 H 0.083 0.917
35 H 0.077 0.923
36 H 0.410 0.590
37 H 0.103 0.897
38 H 0.123 0.877
39 H 0.288 0.712
40 H 0.100 0.900
41 H 0.104 0.896
42 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.043 13.985 2.005 15.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.099 4.099
3 C -0.122 4.122
4 C -0.166 4.166
5 C 0.072 3.928
6 O -0.301 6.301
7 C -0.117 4.117
8 C 0.044 3.956
9 N -0.872 5.872
10 S 2.795 3.205
11 O -0.977 6.977
12 O -0.974 6.974
13 C -0.883 4.883
14 C -0.038 4.038
15 C -0.203 4.203
16 C 0.136 3.864
17 C -0.463 4.463
18 H 0.106 0.894
19 C -0.149 4.149
20 N -0.389 5.389
21 Si 0.739 3.261
22 H -0.180 1.180
23 H -0.192 1.192
24 H -0.195 1.195
25 C -0.260 4.260
26 C -0.017 4.017
27 C -0.106 4.106
28 H 0.089 0.911
29 H 0.084 0.916
30 H 0.087 0.913
31 H 0.142 0.858
32 H 0.145 0.855
33 H 0.247 0.753
34 H 0.101 0.899
35 H 0.095 0.905
36 H 0.243 0.757
37 H 0.121 0.879
38 H 0.140 0.860
39 H 0.099 0.901
40 H 0.118 0.882
41 H 0.122 0.878
42 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -4.230 14.137 1.543 14.837
hybrid contribution -0.869 -0.930 0.736 1.470
sum -5.099 13.207 2.278 14.339
Atomic orbital electron populations
1.20780 0.90945 1.02894 1.02390 1.19937 0.96321 0.92943 1.00744
1.20909 0.93507 0.97653 1.00106 1.21392 0.94541 0.97704 1.02921
1.18356 0.83252 0.91561 0.99618 1.84863 1.15485 1.96343 1.33411
1.20304 0.94006 0.94717 1.02657 1.19892 0.97486 0.93484 0.84710
1.55653 1.61258 1.55866 1.14418 1.01156 0.73160 0.73565 0.72658
1.93487 1.83478 1.87684 1.33088 1.93471 1.57113 1.85682 1.61096
1.29212 1.33488 1.23304 1.02346 1.20266 0.94670 0.96007 0.92829
1.21336 1.02581 0.96213 1.00171 1.17855 0.86098 0.91319 0.91153
1.19970 1.31882 0.99621 0.94792 0.89432 1.26126 0.92713 0.99970
0.96121 1.69820 1.28959 1.33852 1.06251 0.86117 0.78887 0.81305
0.79774 1.17988 1.19222 1.19546 1.21055 1.09733 0.97909 0.97288
1.20171 0.91844 0.94119 0.95610 1.21006 0.92834 0.98224 0.98548
0.91140 0.91638 0.91276 0.85821 0.85463 0.75314 0.89904 0.90523
0.75715 0.87902 0.85974 0.90077 0.88224 0.87800 0.85028
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16
2 C -0.10 -1.00 5.88 -104.60 -0.62 -1.61 16
3 C -0.10 -0.98 9.70 -39.60 -0.38 -1.36 16
4 C -0.15 -1.52 9.99 -39.43 -0.39 -1.91 16
5 C 0.12 1.42 6.68 -39.22 -0.26 1.16 16
6 O -0.49 -5.95 12.84 -19.44 -0.25 -6.20 16
7 C -0.11 -1.46 5.29 -104.47 -0.55 -2.01 16
8 C 0.17 2.46 5.96 -5.20 -0.03 2.43 16
9 N -1.12 -17.80 5.99 -11.66 -0.07 -17.87 16
10 S 2.70 53.16 5.73 -107.50 -0.62 52.54 16
11 O -0.99 -21.59 17.26 -57.17 -0.99 -22.58 16
12 O -0.98 -21.21 16.72 -57.17 -0.96 -22.17 16
13 C -0.79 -17.34 5.97 -39.29 -0.23 -17.57 16
14 C -0.02 -0.40 9.49 -39.66 -0.38 -0.77 16
15 C -0.18 -4.51 8.70 -38.87 -0.34 -4.84 16
16 C 0.14 3.50 5.57 -106.83 -0.60 2.91 16
17 C -0.44 -10.59 9.05 -37.74 -0.34 -10.93 16
18 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16
19 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16
20 N -0.77 -17.83 10.95 55.55 0.61 -17.22 16
21 Si 0.92 16.84 29.60 -169.99 -5.03 11.81 16
22 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16
23 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16
24 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16
25 C -0.24 -5.65 9.80 -38.87 -0.38 -6.03 16
26 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16
27 C -0.09 -1.01 9.32 -39.60 -0.37 -1.38 16
28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
29 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16
30 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16
31 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16
32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16
33 H 0.39 3.10 9.06 45.56 0.41 3.51 16
34 H 0.08 1.18 7.62 -51.93 -0.40 0.78 16
35 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16
36 H 0.41 5.96 8.64 -34.47 -0.30 5.66 16
37 H 0.10 2.16 7.59 -52.48 -0.40 1.76 16
38 H 0.12 3.04 6.15 -52.49 -0.32 2.72 16
39 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16
40 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16
41 H 0.10 2.13 7.60 -52.49 -0.40 1.73 16
42 H 0.13 1.44 8.00 -52.49 -0.42 1.02 16
LS Contribution 373.75 15.07 5.63 5.63
Total: -1.00 -31.34 373.75 -10.96 -42.30
By element:
Atomic # 1 Polarization: 19.27 SS G_CDS: -4.31 Total: 14.95 kcal
Atomic # 6 Polarization: -36.23 SS G_CDS: -4.98 Total: -41.21 kcal
Atomic # 7 Polarization: -35.63 SS G_CDS: 0.54 Total: -35.09 kcal
Atomic # 8 Polarization: -48.75 SS G_CDS: -2.19 Total: -50.94 kcal
Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal
Atomic # 16 Polarization: 53.16 SS G_CDS: -0.62 Total: 52.54 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -31.34 -10.96 -42.30 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001664553991.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.607 kcal
(2) G-P(sol) polarization free energy of solvation -31.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.949 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.910 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds