Wall clock time and date at job start Wed Apr 1 2020 04:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.94501 * 2 1 4 4 C 1.38128 * 120.05515 * 180.25302 * 3 2 1 5 5 C 1.38748 * 119.94193 * 359.49343 * 4 3 2 6 6 O 1.35904 * 120.05891 * 180.27327 * 5 4 3 7 7 C 1.38719 * 119.89098 * 0.25633 * 5 4 3 8 8 C 1.50699 * 120.02802 * 180.02562 * 7 5 4 9 9 N 1.46494 * 109.47493 * 284.99963 * 8 7 5 10 10 S 1.65599 * 120.00394 * 165.00069 * 9 8 7 11 11 O 1.42103 * 106.40549 * 178.54423 * 10 9 8 12 12 O 1.42109 * 106.40049 * 311.46035 * 10 9 8 13 13 C 1.76192 * 107.21761 * 64.99887 * 10 9 8 14 14 C 1.38638 * 119.75071 * 269.72886 * 13 10 9 15 15 C 1.37617 * 120.24934 * 179.72051 * 14 13 10 16 16 C 1.40718 * 119.74501 * 0.57529 * 15 14 13 17 17 C 1.41389 * 120.24517 * 179.68316 * 16 15 14 18 18 H 1.08002 * 119.99671 * 204.39773 * 17 16 15 19 19 C 1.39945 * 120.00449 * 24.39967 * 17 16 15 20 20 N 1.30822 * 119.99834 * 17.85346 * 19 17 16 21 21 Si 1.86799 * 120.00104 * 197.85944 * 19 17 16 22 22 H 1.48501 * 109.47266 * 359.97438 * 21 19 17 23 23 H 1.48509 * 109.46797 * 119.99672 * 21 19 17 24 24 H 1.48496 * 109.47033 * 239.99448 * 21 19 17 25 25 C 1.40717 * 119.50802 * 359.69982 * 16 15 14 26 26 C 1.37621 * 119.74835 * 0.02562 * 25 16 15 27 27 C 1.38164 * 119.94294 * 359.97438 * 7 5 4 28 28 H 1.08998 * 109.46992 * 270.24853 * 1 2 3 29 29 H 1.08997 * 109.47054 * 30.25070 * 1 2 3 30 30 H 1.09000 * 109.46999 * 150.25084 * 1 2 3 31 31 H 1.07995 * 119.97215 * 0.02892 * 3 2 1 32 32 H 1.07997 * 120.02567 * 179.77607 * 4 3 2 33 33 H 0.96693 * 113.99494 * 89.99919 * 6 5 4 34 34 H 1.09005 * 109.46998 * 45.00031 * 8 7 5 35 35 H 1.09000 * 109.47253 * 164.99358 * 8 7 5 36 36 H 0.97003 * 119.99929 * 345.00160 * 9 8 7 37 37 H 1.08003 * 119.87502 * 359.97438 * 14 13 10 38 38 H 1.07996 * 120.13064 * 180.27985 * 15 14 13 39 39 H 0.97002 * 120.00045 * 180.02562 * 20 19 17 40 40 H 1.08007 * 120.12670 * 179.97438 * 25 16 15 41 41 H 1.08000 * 119.87520 * 180.02562 * 26 25 16 42 42 H 1.07996 * 119.97136 * 179.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5786 1.2009 -0.0053 5 6 4.2734 0.0000 0.0000 6 8 5.6325 -0.0001 0.0005 7 6 3.5787 -1.2007 0.0053 8 6 4.3303 -2.5068 0.0117 9 7 4.8843 -2.7581 -1.3210 10 16 6.0557 -3.9103 -1.5271 11 8 6.3536 -3.9357 -2.9164 12 8 7.0356 -3.6698 -0.5264 13 6 5.3272 -5.4686 -1.1458 14 6 5.3762 -5.9516 0.1528 15 6 4.8056 -7.1648 0.4633 16 6 4.1813 -7.9213 -0.5458 17 6 3.5975 -9.1722 -0.2399 18 1 3.4779 -9.9159 -1.0139 19 6 3.1746 -9.4466 1.0656 20 7 2.9889 -8.4670 1.9125 21 14 2.8754 -11.2117 1.5988 22 1 3.1546 -12.1262 0.4626 23 1 3.7725 -11.5444 2.7346 24 1 1.4610 -11.3676 2.0231 25 6 4.1426 -7.4237 -1.8615 26 6 4.7148 -6.2053 -2.1479 27 6 2.1970 -1.1980 0.0057 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6560 2.1327 0.0005 32 1 4.1172 2.1370 -0.0089 33 1 6.0254 0.0036 0.8840 34 1 5.1410 -2.4560 0.7385 35 1 3.6510 -3.3156 0.2812 36 1 4.5650 -2.2494 -2.0828 37 1 5.8605 -5.3716 0.9246 38 1 4.8409 -7.5371 1.4764 39 1 2.6962 -8.6573 2.8175 40 1 3.6664 -7.9962 -2.6438 41 1 4.6860 -5.8213 -3.1569 42 1 1.6557 -2.1324 0.0094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664553991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:03 Heat of formation + Delta-G solvation = -111.051859 kcal Electronic energy + Delta-G solvation = -27461.469941 eV Core-core repulsion = 23496.601522 eV Total energy + Delta-G solvation = -3964.868419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95688 -39.38270 -38.14137 -37.81966 -36.77583 -36.36987 -35.80003 -32.60097 -32.07141 -32.00384 -31.29136 -27.61977 -27.32725 -26.61144 -23.37076 -23.21884 -22.95094 -21.75327 -20.41053 -19.42574 -19.30876 -18.61765 -18.19232 -17.32872 -17.19785 -17.00118 -16.43463 -15.96152 -15.83124 -15.55572 -15.15391 -14.95316 -14.73922 -14.37577 -14.33209 -14.12642 -14.04776 -13.95283 -13.59389 -13.47380 -13.18842 -13.09372 -13.01215 -12.90940 -12.86972 -12.60637 -12.52532 -12.41275 -12.23793 -11.97846 -11.55378 -11.34740 -11.32762 -11.22852 -10.41304 -9.88879 -9.77970 -9.55211 -9.32630 -8.87515 -6.64749 -0.35304 0.27278 0.36732 0.48064 1.05786 1.36401 1.42240 1.53024 2.11950 2.26162 2.51669 2.72378 2.94796 3.36073 3.52510 3.53675 3.71431 3.88015 4.02870 4.25257 4.31033 4.32998 4.39643 4.50321 4.54965 4.79345 4.83293 4.86954 4.88884 4.92296 4.96383 5.09671 5.11443 5.24163 5.24965 5.36353 5.52421 5.53328 5.59385 5.64537 5.76381 5.93091 5.93662 6.12253 6.15980 6.48961 6.68378 6.80904 6.87457 8.07702 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.003135 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.466025 B = 8930.396634 C =10435.732830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C -0.097 4.097 4 C -0.149 4.149 5 C 0.106 3.894 6 O -0.507 6.507 7 C -0.131 4.131 8 C 0.167 3.833 9 N -1.102 6.102 10 S 2.727 3.273 11 O -1.005 7.005 12 O -1.000 7.000 13 C -0.796 4.796 14 C -0.019 4.019 15 C -0.206 4.206 16 C 0.112 3.888 17 C -0.465 4.465 18 H 0.090 0.910 19 C 0.036 3.964 20 N -0.793 5.793 21 Si 0.990 3.010 22 H -0.256 1.256 23 H -0.262 1.262 24 H -0.260 1.260 25 C -0.257 4.257 26 C -0.003 4.003 27 C -0.100 4.100 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.405 0.595 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.419 0.581 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.299 0.701 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 15.239 2.299 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.116 4.116 4 C -0.167 4.167 5 C 0.061 3.939 6 O -0.320 6.320 7 C -0.133 4.133 8 C 0.042 3.958 9 N -0.862 5.862 10 S 2.823 3.177 11 O -0.996 6.996 12 O -0.990 6.990 13 C -0.889 4.889 14 C -0.039 4.039 15 C -0.226 4.226 16 C 0.108 3.892 17 C -0.491 4.491 18 H 0.108 0.892 19 C -0.184 4.184 20 N -0.415 5.415 21 Si 0.809 3.191 22 H -0.179 1.179 23 H -0.186 1.186 24 H -0.185 1.185 25 C -0.277 4.277 26 C -0.022 4.022 27 C -0.119 4.119 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.264 0.736 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.141 0.859 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.342 15.381 1.838 16.386 hybrid contribution -0.545 -1.150 0.653 1.430 sum -5.887 14.231 2.491 15.601 Atomic orbital electron populations 1.20829 0.89240 1.03648 1.03205 1.20235 0.97634 0.92569 0.99830 1.21274 0.93319 0.98596 0.98365 1.21630 0.95092 0.97726 1.02246 1.18514 0.83274 0.91981 1.00141 1.84812 1.15792 1.96391 1.35005 1.20166 0.94390 0.93920 1.04805 1.19974 0.97570 0.94735 0.83543 1.55281 1.60661 1.54531 1.15683 1.00236 0.72930 0.72922 0.71654 1.93454 1.84074 1.87907 1.34167 1.93446 1.58185 1.85738 1.61618 1.29607 1.32629 1.24872 1.01842 1.20454 0.94185 0.95557 0.93726 1.21353 1.04061 0.97279 0.99895 1.18195 0.86873 0.92165 0.91932 1.20243 1.32988 0.99748 0.96165 0.89192 1.26972 0.91836 1.04119 0.95458 1.69838 1.28817 1.35935 1.06950 0.85026 0.79152 0.75678 0.79204 1.17930 1.18622 1.18460 1.21271 1.10532 0.98669 0.97277 1.20443 0.91356 0.93787 0.96646 1.21114 0.92556 0.99076 0.99106 0.90224 0.89943 0.91506 0.82913 0.83644 0.73607 0.89947 0.91090 0.74603 0.86548 0.86951 0.88989 0.87155 0.85931 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 71.24 0.71 -0.75 16 2 C -0.10 -1.86 5.88 -19.85 -0.12 -1.97 16 3 C -0.10 -1.56 9.70 22.26 0.22 -1.34 16 4 C -0.15 -2.72 9.99 22.37 0.22 -2.50 16 5 C 0.11 2.43 6.68 22.51 0.15 2.58 16 6 O -0.51 -11.80 12.84 -92.47 -1.19 -12.98 16 7 C -0.13 -3.24 5.29 -19.77 -0.10 -3.34 16 8 C 0.17 4.82 5.96 85.63 0.51 5.33 16 9 N -1.10 -34.66 5.99 -190.80 -1.14 -35.81 16 10 S 2.73 106.58 5.73 -56.49 -0.32 106.26 16 11 O -1.01 -43.31 17.26 -128.00 -2.21 -45.52 16 12 O -1.00 -42.74 16.72 -128.00 -2.14 -44.88 16 13 C -0.80 -35.31 5.97 22.46 0.13 -35.17 16 14 C -0.02 -0.90 9.49 22.22 0.21 -0.69 16 15 C -0.21 -10.48 8.70 22.73 0.20 -10.28 16 16 C 0.11 5.79 5.57 -21.29 -0.12 5.67 16 17 C -0.46 -23.13 9.05 23.46 0.21 -22.92 16 18 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 19 C 0.04 1.64 5.14 85.26 0.44 2.08 16 20 N -0.79 -37.37 10.95 21.83 0.24 -37.13 16 21 Si 0.99 34.18 29.60 68.60 2.03 36.21 16 22 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 23 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 24 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 25 C -0.26 -12.41 9.80 22.73 0.22 -12.19 16 26 C 0.00 -0.11 9.49 22.22 0.21 0.10 16 27 C -0.10 -2.23 9.32 22.25 0.21 -2.02 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 30 H 0.07 0.90 8.08 -2.39 -0.02 0.89 16 31 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 32 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.41 6.12 9.06 -74.06 -0.67 5.45 16 34 H 0.08 2.35 7.62 -2.38 -0.02 2.34 16 35 H 0.07 2.11 7.95 -2.39 -0.02 2.09 16 36 H 0.42 11.86 8.64 -96.74 -0.84 11.03 16 37 H 0.12 4.97 7.59 -2.91 -0.02 4.95 16 38 H 0.11 5.82 6.15 -2.91 -0.02 5.81 16 39 H 0.30 12.42 8.30 -92.71 -0.77 11.66 16 40 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 41 H 0.12 4.97 7.60 -2.91 -0.02 4.95 16 42 H 0.13 2.83 8.00 -2.91 -0.02 2.81 16 Total: -1.00 -66.94 373.75 -1.86 -68.80 By element: Atomic # 1 Polarization: 42.89 SS G_CDS: -0.43 Total: 42.46 kcal Atomic # 6 Polarization: -80.71 SS G_CDS: 3.31 Total: -77.41 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -0.90 Total: -72.94 kcal Atomic # 8 Polarization: -97.85 SS G_CDS: -5.54 Total: -103.39 kcal Atomic # 14 Polarization: 34.18 SS G_CDS: 2.03 Total: 36.21 kcal Atomic # 16 Polarization: 106.58 SS G_CDS: -0.32 Total: 106.26 kcal Total: -66.94 -1.86 -68.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664553991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.256 kcal (2) G-P(sol) polarization free energy of solvation -66.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds