Wall clock time and date at job start Wed Apr 1 2020 04:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48499 * 109.46726 * 240.00031 * 3 2 1 5 5 H 1.48496 * 109.47105 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47194 * 119.99828 * 3 2 1 7 7 C 1.38947 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00030 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.50698 * 109.47467 * 180.02562 * 17 16 14 19 19 N 1.31809 * 119.12048 * 89.99933 * 18 17 16 20 20 C 1.32329 * 120.81337 * 180.02562 * 19 18 17 21 21 C 1.38614 * 119.10261 * 359.97438 * 20 19 18 22 22 C 1.38584 * 118.40384 * 0.02562 * 21 20 19 23 23 C 1.50698 * 120.44748 * 180.02562 * 22 21 20 24 24 F 1.39898 * 109.47221 * 90.00046 * 23 22 21 25 25 F 1.39905 * 109.46730 * 209.99887 * 23 22 21 26 26 F 1.39890 * 109.47174 * 329.99696 * 23 22 21 27 27 N 1.31779 * 119.12298 * 269.73042 * 18 17 16 28 28 H 0.97000 * 119.99613 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 31 31 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 32 32 H 0.97000 * 120.00410 * 0.02562 * 13 12 10 33 33 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 34 34 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 35 35 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 36 36 H 1.07999 * 120.44784 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.80243 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1957 -5.9764 -0.0016 14 6 1.7464 -7.2471 -0.0017 15 8 0.5510 -7.4693 -0.0018 16 7 2.6222 -8.2715 0.0035 17 6 2.1339 -9.6527 0.0095 18 6 3.3060 -10.5999 0.0151 19 7 3.8037 -10.9977 1.1689 20 6 4.8328 -11.8285 1.2130 21 6 5.3859 -12.2802 0.0249 22 6 4.8351 -11.8397 -1.1681 23 6 5.3999 -12.3020 -2.4866 24 9 4.7452 -13.4706 -2.8903 25 9 5.2111 -11.3051 -3.4499 26 9 6.7675 -12.5593 -2.3436 27 7 3.8025 -11.0127 -1.1337 28 1 -0.4849 0.8401 -0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6173 -4.9205 -0.8913 31 1 0.6167 -4.9208 0.8886 32 1 3.1494 -5.7992 -0.0012 33 1 3.5759 -8.0943 0.0033 34 1 1.5277 -9.8199 0.8999 35 1 1.5288 -9.8280 -0.8800 36 1 5.2362 -12.1503 2.1617 37 1 6.2264 -12.9584 0.0288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682373242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:44 Heat of formation + Delta-G solvation = -182.684867 kcal Electronic energy + Delta-G solvation = -28627.086116 eV Core-core repulsion = 23603.254253 eV Total energy + Delta-G solvation = -5023.831863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.099 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.36921 -48.89228 -48.83931 -42.56145 -41.18853 -40.01253 -36.54873 -36.15896 -35.46224 -35.28072 -33.67266 -33.33679 -29.86035 -28.63385 -28.07474 -26.24555 -24.79036 -23.73067 -22.10302 -21.36063 -20.22131 -20.10368 -19.96986 -19.74864 -19.45408 -18.57846 -17.74074 -17.42765 -16.93366 -16.88745 -16.60982 -16.27886 -16.08679 -15.83307 -15.81797 -15.63211 -15.60152 -15.25707 -15.20142 -15.04059 -14.97678 -14.96634 -14.37982 -14.19072 -13.93301 -13.67109 -13.52756 -13.43240 -12.88773 -12.45923 -12.35996 -12.28905 -12.13113 -11.58880 -11.55220 -11.02541 -10.73820 -10.54673 -10.51364 -10.09742 -9.91726 -8.49673 -5.99900 -0.78038 -0.41754 1.09140 1.39009 1.41717 1.46859 1.55512 1.91024 2.06794 2.19024 2.23852 2.31851 2.43158 2.71711 3.04527 3.11191 3.13239 3.17514 3.30858 3.46364 3.71500 4.03710 4.15111 4.22602 4.42763 4.45731 4.49449 4.54897 4.95653 5.21335 5.29172 5.39512 5.48760 5.80175 5.93457 6.49436 6.59618 6.91128 7.04618 7.40637 7.48130 7.96009 8.66919 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.001746 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.702481 B =16030.650616 C =16568.180230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.625 6.625 12 C 0.142 3.858 13 N -0.722 5.722 14 C 0.713 3.287 15 O -0.623 6.623 16 N -0.728 5.728 17 C 0.214 3.786 18 C 0.305 3.695 19 N -0.492 5.492 20 C 0.168 3.832 21 C -0.151 4.151 22 C 0.066 3.934 23 C 0.528 3.472 24 F -0.168 7.168 25 F -0.173 7.173 26 F -0.158 7.158 27 N -0.490 5.490 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.410 0.590 33 H 0.406 0.594 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.232 0.768 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.367 -29.201 1.047 31.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.513 6.513 12 C 0.013 3.987 13 N -0.380 5.380 14 C 0.413 3.587 15 O -0.504 6.504 16 N -0.385 5.385 17 C 0.088 3.912 18 C 0.036 3.964 19 N -0.206 5.206 20 C 0.001 3.999 21 C -0.173 4.173 22 C -0.081 4.081 23 C 0.472 3.528 24 F -0.150 7.150 25 F -0.154 7.154 26 F -0.139 7.139 27 N -0.204 5.204 28 H 0.089 0.911 29 H 0.234 0.766 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.247 0.753 33 H 0.241 0.759 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.248 0.752 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 10.129 -28.614 0.984 30.370 hybrid contribution 1.284 0.448 -0.506 1.451 sum 11.413 -28.166 0.477 30.394 Atomic orbital electron populations 1.69676 1.06971 1.29681 1.49202 1.26133 0.96560 1.02685 0.95824 0.84927 0.77711 0.76264 0.79077 1.19557 1.19650 1.19459 1.19691 0.92952 0.83554 1.50477 0.89596 1.41827 1.09625 1.04563 1.63435 1.20432 0.88109 0.85938 0.83487 1.90469 1.15232 1.87571 1.58068 1.20619 0.90886 0.82807 1.04341 1.44652 1.11095 1.03166 1.79044 1.15695 0.84833 0.80524 0.77655 1.90907 1.15188 1.84528 1.59751 1.44633 1.09336 1.04019 1.80462 1.19709 0.90129 0.76358 1.04954 1.22863 0.95540 0.95016 0.82935 1.68395 1.11586 1.11452 1.29155 1.24311 0.87606 0.87390 1.00576 1.23248 1.02055 1.00224 0.91763 1.21611 0.95092 0.97016 0.94385 1.17745 0.76039 0.75345 0.83655 1.93261 1.81074 1.49130 1.91503 1.93258 1.94900 1.61327 1.65898 1.93251 1.30956 1.94000 1.95687 1.67726 1.10009 1.10426 1.32242 0.91070 0.76631 0.88834 0.88650 0.75291 0.75892 0.88022 0.89037 0.75202 0.78024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.67 13.05 21.66 0.28 -48.39 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.78 29.55 68.60 2.03 43.80 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.34 -18.59 9.68 84.04 0.81 -17.77 16 8 H 0.09 4.97 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -28.07 5.29 -306.98 -1.62 -29.69 16 10 C 0.43 19.97 7.85 87.66 0.69 20.66 16 11 O -0.63 -32.25 15.24 -3.08 -0.05 -32.30 16 12 C 0.14 5.19 6.15 85.63 0.53 5.71 16 13 N -0.72 -23.83 5.53 -482.29 -2.67 -26.50 16 14 C 0.71 22.49 8.57 179.06 1.53 24.03 16 15 O -0.62 -23.45 16.34 -4.01 -0.07 -23.52 16 16 N -0.73 -17.37 5.55 -482.29 -2.68 -20.05 16 17 C 0.21 4.50 6.11 85.63 0.52 5.03 16 18 C 0.30 5.54 7.01 138.75 0.97 6.51 16 19 N -0.49 -7.15 10.34 -187.84 -1.94 -9.09 16 20 C 0.17 1.07 11.31 84.71 0.96 2.03 16 21 C -0.15 -0.95 9.52 22.44 0.21 -0.74 16 22 C 0.07 0.94 6.32 42.56 0.27 1.21 16 23 C 0.53 7.73 3.45 71.24 0.25 7.98 16 24 F -0.17 -2.58 17.30 44.97 0.78 -1.81 16 25 F -0.17 -3.41 17.07 44.97 0.77 -2.64 16 26 F -0.16 -1.83 16.53 44.97 0.74 -1.08 16 27 N -0.49 -9.38 10.00 -176.03 -1.76 -11.14 16 28 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 30 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 32 H 0.41 13.27 7.45 -92.71 -0.69 12.58 16 33 H 0.41 8.37 8.48 -92.71 -0.79 7.58 16 34 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.23 -0.68 8.06 -2.91 -0.02 -0.70 16 37 H 0.20 -0.29 7.69 -2.91 -0.02 -0.31 16 Total: -1.00 -72.42 352.20 0.03 -72.40 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -1.00 Total: 35.49 kcal Atomic # 6 Polarization: 47.30 SS G_CDS: 7.21 Total: 54.52 kcal Atomic # 7 Polarization: -134.47 SS G_CDS: -10.39 Total: -144.85 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -0.11 Total: -55.82 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 2.29 Total: -5.53 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -72.42 0.03 -72.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682373242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.287 kcal (2) G-P(sol) polarization free energy of solvation -72.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds