Wall clock time and date at job start Wed Apr 1 2020 04:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47243 * 2 1 4 4 C 1.36932 * 120.00169 * 264.08891 * 3 2 1 5 5 H 1.08001 * 120.00250 * 188.81726 * 4 3 2 6 6 C 1.38813 * 119.99954 * 8.81462 * 4 3 2 7 7 N 1.31618 * 120.00012 * 28.80106 * 6 4 3 8 8 Si 1.86802 * 119.99902 * 208.79329 * 6 4 3 9 9 H 1.48500 * 109.46661 * 94.97887 * 8 6 4 10 10 H 1.48502 * 109.46978 * 214.97601 * 8 6 4 11 11 H 1.48495 * 109.47460 * 334.97725 * 8 6 4 12 12 C 1.46504 * 119.99769 * 84.08892 * 3 2 1 13 13 C 1.53008 * 109.47014 * 269.99945 * 12 3 2 14 14 C 1.52997 * 109.46700 * 179.97438 * 13 12 3 15 15 N 1.46506 * 109.46887 * 179.97438 * 14 13 12 16 16 C 1.34770 * 120.00418 * 180.27499 * 15 14 13 17 17 O 1.21722 * 119.99878 * 354.22277 * 16 15 14 18 18 C 1.46535 * 120.00492 * 174.22117 * 16 15 14 19 19 C 1.37965 * 126.22392 * 4.04028 * 18 16 15 20 20 C 1.39792 * 107.13311 * 180.02562 * 19 18 16 21 21 Cl 1.73595 * 126.06315 * 179.97438 * 20 19 18 22 22 C 1.35721 * 107.87097 * 0.02562 * 20 19 18 23 23 Cl 1.73605 * 125.58216 * 180.02562 * 22 20 19 24 24 N 1.35664 * 108.83427 * 359.72993 * 22 20 19 25 25 C 1.46495 * 125.69550 * 180.26695 * 24 22 20 26 26 H 1.09002 * 109.47157 * 59.99572 * 1 2 3 27 27 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47018 * 299.99980 * 1 2 3 29 29 H 1.09002 * 109.47018 * 240.00020 * 2 1 3 30 30 H 1.09002 * 109.47157 * 120.00428 * 2 1 3 31 31 H 0.96997 * 120.00256 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46899 * 150.00086 * 12 3 2 33 33 H 1.09002 * 109.47076 * 29.99999 * 12 3 2 34 34 H 1.09000 * 109.46703 * 60.00087 * 13 12 3 35 35 H 1.09001 * 109.46847 * 300.00305 * 13 12 3 36 36 H 1.09000 * 109.47432 * 60.00581 * 14 13 12 37 37 H 1.08993 * 109.47587 * 299.99517 * 14 13 12 38 38 H 0.97005 * 119.99948 * 0.02562 * 15 14 13 39 39 H 1.08007 * 126.43294 * 0.02562 * 19 18 16 40 40 H 1.09003 * 109.47458 * 264.37995 * 25 24 22 41 41 H 1.09002 * 109.47438 * 24.38109 * 25 24 22 42 42 H 1.09004 * 109.47043 * 144.38383 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3617 1.9860 -1.1795 5 1 2.8536 2.9475 -1.1703 6 6 2.0778 1.3633 -2.3872 7 7 1.0472 0.5501 -2.4820 8 14 3.1581 1.6798 -3.8779 9 1 4.1889 0.6155 -3.9769 10 1 2.3219 1.6748 -5.1052 11 1 3.8221 3.0005 -3.7368 12 6 2.1393 2.1153 1.2620 13 6 0.8286 2.8492 1.5528 14 6 0.9548 3.6154 2.8711 15 7 -0.3000 4.3186 3.1493 16 6 -0.4198 5.0684 4.2627 17 8 0.4738 5.0779 5.0891 18 6 -1.6259 5.8722 4.4786 19 6 -2.7442 5.8974 3.6710 20 6 -3.6475 6.7958 4.2464 21 17 -5.2183 7.2019 3.6290 22 6 -3.0781 7.2951 5.3726 23 17 -3.8041 8.4522 6.4441 24 7 -1.8513 6.7370 5.5276 25 6 -0.9201 7.0106 6.6249 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.8490 0.1147 -3.3258 32 1 2.9513 2.8384 1.1853 33 1 2.3511 1.4156 2.0706 34 1 0.0167 2.1261 1.6295 35 1 0.6169 3.5489 0.7442 36 1 1.7668 4.3385 2.7949 37 1 1.1662 2.9154 3.6794 38 1 -1.0434 4.2475 2.5301 39 1 -2.8937 5.3296 2.7644 40 1 -0.2081 7.7756 6.3151 41 1 -1.4760 7.3623 7.4941 42 1 -0.3833 6.0975 6.8821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689936053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:21 Heat of formation + Delta-G solvation = 23.394222 kcal Electronic energy + Delta-G solvation = -25260.432391 eV Core-core repulsion = 21329.210186 eV Total energy + Delta-G solvation = -3931.222204 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.091 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.93822 -39.29806 -37.20958 -36.80176 -36.58801 -35.12241 -33.34117 -32.14025 -30.66779 -29.62330 -28.63514 -26.98627 -25.44519 -23.64750 -22.59609 -21.35697 -21.05535 -20.34099 -19.77749 -18.36717 -16.81148 -16.52267 -16.38161 -16.02342 -15.35511 -14.99669 -14.74039 -14.38158 -14.17766 -13.95994 -13.76348 -13.50652 -13.45500 -13.15444 -12.72923 -12.65982 -12.26312 -11.90069 -11.81642 -11.78170 -11.67468 -11.46610 -11.35445 -11.23377 -10.92244 -10.72671 -10.44961 -10.33225 -10.17832 -9.80762 -9.61276 -9.32504 -9.20165 -9.12716 -8.56860 -8.36515 -6.93003 -5.80764 -3.07560 0.87857 1.05236 1.72881 1.84464 2.48163 3.04850 3.19870 3.39397 3.48382 3.48809 4.28888 4.42561 4.50389 4.60823 4.84567 5.02954 5.18567 5.22073 5.30087 5.33028 5.43516 5.71122 5.81303 5.83238 6.05425 6.10742 6.15174 6.30380 6.37536 6.45840 6.56756 6.71980 6.84200 6.90912 7.08254 7.14720 7.37924 7.63552 7.74131 7.99619 8.09154 8.33430 9.22334 9.86236 10.31625 11.23960 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.002063 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.003374 B =13570.055937 C =14337.833437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 N -0.596 5.596 4 C -0.253 4.253 5 H 0.074 0.926 6 C 0.000 4.000 7 N -0.891 5.891 8 Si 0.890 3.110 9 H -0.290 1.290 10 H -0.294 1.294 11 H -0.281 1.281 12 C 0.157 3.843 13 C -0.156 4.156 14 C 0.122 3.878 15 N -0.707 5.707 16 C 0.587 3.413 17 O -0.546 6.546 18 C -0.012 4.012 19 C -0.121 4.121 20 C -0.096 4.096 21 Cl -0.030 7.030 22 C 0.088 3.912 23 Cl 0.001 6.999 24 N -0.395 5.395 25 C 0.063 3.937 26 H 0.094 0.906 27 H 0.018 0.982 28 H 0.015 0.985 29 H 0.079 0.921 30 H 0.005 0.995 31 H 0.252 0.748 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.405 0.595 39 H 0.166 0.834 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 12.837 17.732 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 N -0.317 5.317 4 C -0.381 4.381 5 H 0.092 0.908 6 C -0.197 4.197 7 N -0.536 5.536 8 Si 0.720 3.280 9 H -0.217 1.217 10 H -0.221 1.221 11 H -0.206 1.206 12 C 0.028 3.972 13 C -0.197 4.197 14 C -0.001 4.001 15 N -0.358 5.358 16 C 0.373 3.627 17 O -0.426 6.426 18 C -0.127 4.127 19 C -0.147 4.147 20 C -0.130 4.130 21 Cl -0.001 7.001 22 C -0.056 4.056 23 Cl 0.029 6.971 24 N -0.070 5.070 25 C -0.077 4.077 26 H 0.112 0.888 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.097 0.903 30 H 0.023 0.977 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.240 0.760 39 H 0.183 0.817 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.191 12.933 18.481 24.357 hybrid contribution -0.317 0.410 -1.032 1.155 sum -9.507 13.343 17.449 23.935 Atomic orbital electron populations 1.22446 0.99254 0.98275 1.01399 1.20706 0.92566 0.84538 0.97961 1.44275 1.75652 1.10057 1.01696 1.19254 1.31334 1.04043 0.83499 0.90844 1.24681 0.97496 1.00412 0.97158 1.70170 1.24171 1.34291 1.24948 0.86447 0.81032 0.77795 0.82745 1.21690 1.22129 1.20632 1.20665 0.93574 0.94154 0.88775 1.22761 1.03095 0.99798 0.94073 1.21611 0.84294 0.95435 0.98784 1.45847 1.18108 1.48654 1.23147 1.16741 0.84347 0.79270 0.82351 1.90810 1.41612 1.66227 1.43930 1.20150 0.98478 1.01762 0.92312 1.21258 0.91302 1.00990 1.01137 1.19560 0.91326 1.05130 0.97023 1.98353 1.22370 1.92979 1.86415 1.20586 0.88110 1.00428 0.96431 1.98407 1.79818 1.55384 1.63445 1.43744 1.12299 1.31062 1.19935 1.22441 0.92604 1.05436 0.87249 0.88764 0.96318 0.96652 0.90256 0.97719 0.93816 0.93481 0.94167 0.91408 0.91217 0.91497 0.91478 0.76006 0.81676 0.89567 0.89370 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.60 37.16 0.36 -3.03 16 2 C 0.17 3.87 5.64 -4.04 -0.02 3.85 16 3 N -0.60 -13.91 2.54 -173.23 -0.44 -14.35 16 4 C -0.25 -6.54 9.66 -15.06 -0.15 -6.68 16 5 H 0.07 1.88 7.96 -52.49 -0.42 1.47 16 6 C 0.00 0.01 4.78 -17.43 -0.08 -0.08 16 7 N -0.89 -24.13 8.78 55.49 0.49 -23.65 16 8 Si 0.89 21.03 29.64 -169.99 -5.04 15.99 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 C 0.16 2.93 5.71 -4.04 -0.02 2.91 16 13 C -0.16 -2.51 5.53 -26.73 -0.15 -2.65 16 14 C 0.12 1.65 5.68 -4.04 -0.02 1.63 16 15 N -0.71 -8.53 5.54 -61.66 -0.34 -8.87 16 16 C 0.59 7.56 7.77 -12.92 -0.10 7.46 16 17 O -0.55 -8.31 14.79 5.17 0.08 -8.23 16 18 C -0.01 -0.14 6.89 -81.94 -0.56 -0.70 16 19 C -0.12 -1.23 10.34 -39.10 -0.40 -1.63 16 20 C -0.10 -1.01 6.66 -39.90 -0.27 -1.27 16 21 Cl -0.03 -0.29 29.12 -51.86 -1.51 -1.80 16 22 C 0.09 0.90 7.39 -16.76 -0.12 0.77 16 23 Cl 0.00 0.01 28.38 -51.86 -1.47 -1.46 16 24 N -0.39 -4.10 3.17 -116.64 -0.37 -4.47 16 25 C 0.06 0.51 10.34 59.84 0.62 1.13 16 26 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.01 0.30 5.97 -51.93 -0.31 -0.01 16 29 H 0.08 2.06 6.02 -51.93 -0.31 1.74 16 30 H 0.00 0.10 7.98 -51.93 -0.41 -0.32 16 31 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.05 0.86 8.03 -51.93 -0.42 0.45 16 33 H 0.04 0.70 7.95 -51.93 -0.41 0.28 16 34 H 0.07 1.13 5.92 -51.93 -0.31 0.82 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.40 4.15 7.37 -40.82 -0.30 3.85 16 39 H 0.17 1.34 7.44 -52.48 -0.39 0.95 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.53 7.57 -51.93 -0.39 0.13 16 42 H 0.11 1.02 6.58 -51.93 -0.34 0.68 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -28.98 373.27 -9.50 -38.48 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.59 Total: 1.05 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -0.93 Total: 1.69 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.66 Total: -51.34 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.23 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.04 Total: 15.99 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -2.98 Total: -3.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.98 -9.50 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689936053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.874 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds