Wall clock time and date at job start Wed Apr 1 2020 04:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47243 * 2 1 4 4 C 1.36932 * 120.00169 * 264.08891 * 3 2 1 5 5 H 1.08001 * 120.00250 * 188.81726 * 4 3 2 6 6 C 1.38813 * 119.99954 * 8.81462 * 4 3 2 7 7 N 1.31618 * 120.00012 * 28.80106 * 6 4 3 8 8 Si 1.86802 * 119.99902 * 208.79329 * 6 4 3 9 9 H 1.48500 * 109.46661 * 94.97887 * 8 6 4 10 10 H 1.48502 * 109.46978 * 214.97601 * 8 6 4 11 11 H 1.48495 * 109.47460 * 334.97725 * 8 6 4 12 12 C 1.46504 * 119.99769 * 84.08892 * 3 2 1 13 13 C 1.53008 * 109.47014 * 269.99945 * 12 3 2 14 14 C 1.52997 * 109.46700 * 179.97438 * 13 12 3 15 15 N 1.46506 * 109.46887 * 179.97438 * 14 13 12 16 16 C 1.34770 * 120.00418 * 180.27499 * 15 14 13 17 17 O 1.21722 * 119.99878 * 354.22277 * 16 15 14 18 18 C 1.46535 * 120.00492 * 174.22117 * 16 15 14 19 19 C 1.37965 * 126.22392 * 4.04028 * 18 16 15 20 20 C 1.39792 * 107.13311 * 180.02562 * 19 18 16 21 21 Cl 1.73595 * 126.06315 * 179.97438 * 20 19 18 22 22 C 1.35721 * 107.87097 * 0.02562 * 20 19 18 23 23 Cl 1.73605 * 125.58216 * 180.02562 * 22 20 19 24 24 N 1.35664 * 108.83427 * 359.72993 * 22 20 19 25 25 C 1.46495 * 125.69550 * 180.26695 * 24 22 20 26 26 H 1.09002 * 109.47157 * 59.99572 * 1 2 3 27 27 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47018 * 299.99980 * 1 2 3 29 29 H 1.09002 * 109.47018 * 240.00020 * 2 1 3 30 30 H 1.09002 * 109.47157 * 120.00428 * 2 1 3 31 31 H 0.96997 * 120.00256 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46899 * 150.00086 * 12 3 2 33 33 H 1.09002 * 109.47076 * 29.99999 * 12 3 2 34 34 H 1.09000 * 109.46703 * 60.00087 * 13 12 3 35 35 H 1.09001 * 109.46847 * 300.00305 * 13 12 3 36 36 H 1.09000 * 109.47432 * 60.00581 * 14 13 12 37 37 H 1.08993 * 109.47587 * 299.99517 * 14 13 12 38 38 H 0.97005 * 119.99948 * 0.02562 * 15 14 13 39 39 H 1.08007 * 126.43294 * 0.02562 * 19 18 16 40 40 H 1.09003 * 109.47458 * 264.37995 * 25 24 22 41 41 H 1.09002 * 109.47438 * 24.38109 * 25 24 22 42 42 H 1.09004 * 109.47043 * 144.38383 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3617 1.9860 -1.1795 5 1 2.8536 2.9475 -1.1703 6 6 2.0778 1.3633 -2.3872 7 7 1.0472 0.5501 -2.4820 8 14 3.1581 1.6798 -3.8779 9 1 4.1889 0.6155 -3.9769 10 1 2.3219 1.6748 -5.1052 11 1 3.8221 3.0005 -3.7368 12 6 2.1393 2.1153 1.2620 13 6 0.8286 2.8492 1.5528 14 6 0.9548 3.6154 2.8711 15 7 -0.3000 4.3186 3.1493 16 6 -0.4198 5.0684 4.2627 17 8 0.4738 5.0779 5.0891 18 6 -1.6259 5.8722 4.4786 19 6 -2.7442 5.8974 3.6710 20 6 -3.6475 6.7958 4.2464 21 17 -5.2183 7.2019 3.6290 22 6 -3.0781 7.2951 5.3726 23 17 -3.8041 8.4522 6.4441 24 7 -1.8513 6.7370 5.5276 25 6 -0.9201 7.0106 6.6249 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.8490 0.1147 -3.3258 32 1 2.9513 2.8384 1.1853 33 1 2.3511 1.4156 2.0706 34 1 0.0167 2.1261 1.6295 35 1 0.6169 3.5489 0.7442 36 1 1.7668 4.3385 2.7949 37 1 1.1662 2.9154 3.6794 38 1 -1.0434 4.2475 2.5301 39 1 -2.8937 5.3296 2.7644 40 1 -0.2081 7.7756 6.3151 41 1 -1.4760 7.3623 7.4941 42 1 -0.3833 6.0975 6.8821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689936053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:20 Heat of formation + Delta-G solvation = 8.238599 kcal Electronic energy + Delta-G solvation = -25261.089588 eV Core-core repulsion = 21329.210186 eV Total energy + Delta-G solvation = -3931.879402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.091 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.73982 -40.31253 -38.25119 -37.92037 -37.54884 -36.36383 -34.24296 -33.59989 -32.25528 -30.97551 -29.98543 -27.68333 -26.94661 -25.22660 -23.71056 -22.64056 -22.03382 -21.89332 -20.80445 -19.21352 -18.64598 -17.42216 -17.23247 -17.17009 -16.65521 -16.48029 -15.72758 -15.56227 -15.41540 -15.13059 -14.81737 -14.71004 -14.50243 -14.27368 -14.16872 -13.67591 -13.37559 -13.31151 -13.12736 -12.97350 -12.86680 -12.60672 -12.54010 -12.50614 -12.45595 -12.12818 -12.09066 -11.99456 -11.63806 -11.30890 -11.22357 -11.09505 -10.30689 -10.20425 -9.94894 -9.37641 -8.80481 -7.78795 -5.05314 0.03671 0.29324 0.97143 1.04141 1.49813 1.55070 1.60496 1.66858 2.11060 2.29742 2.58939 3.30488 3.49921 3.63260 3.68761 3.87194 4.17262 4.23082 4.28789 4.31889 4.50599 4.53406 4.60275 4.70731 4.80399 4.85832 4.94809 5.03491 5.07998 5.24264 5.28485 5.36479 5.38717 5.39973 5.54887 5.59747 5.69650 5.83116 6.23163 6.39679 6.42006 7.02472 7.26854 7.99486 8.39695 9.23853 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.002063 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.003374 B =13570.055937 C =14337.833437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.168 3.832 3 N -0.611 5.611 4 C -0.255 4.255 5 H 0.071 0.929 6 C -0.047 4.047 7 N -0.910 5.910 8 Si 0.943 3.057 9 H -0.295 1.295 10 H -0.301 1.301 11 H -0.275 1.275 12 C 0.150 3.850 13 C -0.136 4.136 14 C 0.135 3.865 15 N -0.702 5.702 16 C 0.590 3.410 17 O -0.573 6.573 18 C -0.031 4.031 19 C -0.113 4.113 20 C -0.111 4.111 21 Cl -0.026 7.026 22 C 0.090 3.910 23 Cl 0.016 6.984 24 N -0.398 5.398 25 C 0.060 3.940 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.026 0.974 31 H 0.245 0.755 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.414 0.586 39 H 0.183 0.817 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.347 13.701 18.970 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.043 3.957 3 N -0.333 5.333 4 C -0.385 4.385 5 H 0.089 0.911 6 C -0.242 4.242 7 N -0.557 5.557 8 Si 0.773 3.227 9 H -0.222 1.222 10 H -0.228 1.228 11 H -0.200 1.200 12 C 0.024 3.976 13 C -0.176 4.176 14 C 0.012 3.988 15 N -0.353 5.353 16 C 0.377 3.623 17 O -0.454 6.454 18 C -0.146 4.146 19 C -0.139 4.139 20 C -0.145 4.145 21 Cl 0.003 6.997 22 C -0.055 4.055 23 Cl 0.045 6.955 24 N -0.073 5.073 25 C -0.079 4.079 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.251 0.749 39 H 0.200 0.800 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.632 13.815 19.736 25.945 hybrid contribution -0.203 0.197 -1.319 1.349 sum -9.835 14.012 18.417 25.145 Atomic orbital electron populations 1.22226 0.98378 0.98752 1.00630 1.20619 0.93265 0.84552 0.97302 1.44425 1.75954 1.10481 1.02412 1.19452 1.30575 1.03839 0.84605 0.91075 1.25242 0.98502 1.01247 0.99224 1.70309 1.25062 1.35398 1.24883 0.85603 0.79353 0.77572 0.80129 1.22226 1.22846 1.19963 1.20839 0.94858 0.94555 0.87372 1.22382 1.01224 0.99192 0.94804 1.21323 0.84919 0.95289 0.97297 1.45687 1.17926 1.48376 1.23301 1.16860 0.84479 0.79035 0.81910 1.90797 1.42680 1.67146 1.44818 1.19952 0.98361 1.02812 0.93453 1.21506 0.90633 1.00452 1.01273 1.19697 0.91737 1.05631 0.97459 1.98353 1.22028 1.92962 1.86380 1.20766 0.87947 1.00230 0.96526 1.98414 1.79510 1.54702 1.62889 1.43913 1.12575 1.30745 1.20065 1.22559 0.92745 1.05131 0.87472 0.92002 0.95214 0.94755 0.93568 0.95588 0.94540 0.93279 0.92391 0.91770 0.92856 0.91638 0.91141 0.74897 0.79992 0.88913 0.87284 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.03 9.60 71.98 0.69 -5.34 16 2 C 0.17 7.65 5.64 86.38 0.49 8.14 16 3 N -0.61 -28.08 2.54 -701.98 -1.78 -29.86 16 4 C -0.25 -13.14 9.66 84.03 0.81 -12.33 16 5 H 0.07 3.63 7.96 -2.91 -0.02 3.60 16 6 C -0.05 -2.47 4.78 84.86 0.41 -2.07 16 7 N -0.91 -49.99 8.78 21.65 0.19 -49.80 16 8 Si 0.94 43.62 29.64 68.60 2.03 45.66 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 C 0.15 5.39 5.71 86.38 0.49 5.89 16 13 C -0.14 -4.13 5.53 30.60 0.17 -3.97 16 14 C 0.14 3.43 5.68 86.38 0.49 3.92 16 15 N -0.70 -15.81 5.54 -467.21 -2.59 -18.40 16 16 C 0.59 14.45 7.77 86.41 0.67 15.12 16 17 O -0.57 -16.89 14.79 -4.42 -0.07 -16.95 16 18 C -0.03 -0.67 6.89 40.30 0.28 -0.39 16 19 C -0.11 -2.11 10.34 22.58 0.23 -1.87 16 20 C -0.11 -2.14 6.66 22.06 0.15 -2.00 16 21 Cl -0.03 -0.47 29.12 -2.72 -0.08 -0.55 16 22 C 0.09 1.68 7.39 83.52 0.62 2.30 16 23 Cl 0.02 0.25 28.38 -2.72 -0.08 0.17 16 24 N -0.40 -7.69 3.17 -522.94 -1.66 -9.35 16 25 C 0.06 0.90 10.34 127.77 1.32 2.22 16 26 H 0.06 3.10 6.17 -2.39 -0.01 3.08 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 1.30 5.97 -2.39 -0.01 1.28 16 29 H 0.05 2.41 6.02 -2.39 -0.01 2.40 16 30 H 0.03 1.06 7.98 -2.39 -0.02 1.04 16 31 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 32 H 0.05 1.73 8.03 -2.39 -0.02 1.71 16 33 H 0.06 1.88 7.95 -2.39 -0.02 1.86 16 34 H 0.06 2.02 5.92 -2.39 -0.01 2.00 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.41 7.76 7.37 -92.70 -0.68 7.07 16 39 H 0.18 2.59 7.44 -2.91 -0.02 2.57 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.11 1.11 7.57 -2.39 -0.02 1.09 16 42 H 0.10 1.77 6.58 -2.38 -0.02 1.75 16 Total: -1.00 -61.06 373.27 3.17 -57.89 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.38 Total: 11.57 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 6.82 Total: 9.62 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -5.84 Total: -107.40 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.07 Total: -16.95 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.16 Total: -0.38 kcal Total: -61.06 3.17 -57.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689936053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.125 kcal (2) G-P(sol) polarization free energy of solvation -61.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds