Wall clock time and date at job start Wed Apr 1 2020 04:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86801 * 119.99749 * 2 1 4 4 H 1.48502 * 109.47198 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47324 * 300.00105 * 3 2 1 6 6 H 1.48505 * 109.47176 * 60.00183 * 3 2 1 7 7 C 1.38805 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00316 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99625 * 359.97438 * 7 2 1 10 10 C 1.76201 * 99.99814 * 185.64925 * 9 7 2 11 11 C 1.39113 * 120.19121 * 8.13345 * 10 9 7 12 12 C 1.37906 * 120.05207 * 179.97438 * 11 10 9 13 13 C 1.38659 * 120.43719 * 0.02562 * 12 11 10 14 14 C 1.37812 * 120.38257 * 359.66970 * 13 12 11 15 15 C 1.39677 * 119.93488 * 0.62670 * 14 13 12 16 16 C 1.47427 * 120.21403 * 179.67421 * 15 14 13 17 17 O 1.21610 * 120.00034 * 140.83992 * 16 15 14 18 18 N 1.34778 * 119.99813 * 320.83750 * 16 15 14 19 19 C 1.47535 * 125.67154 * 354.36078 * 18 16 15 20 20 C 1.55136 * 104.96503 * 203.92494 * 19 18 16 21 21 C 1.53931 * 101.45808 * 324.20431 * 20 19 18 22 22 C 1.53479 * 111.17177 * 154.50421 * 21 20 19 23 23 C 1.54863 * 101.65151 * 136.25966 * 22 21 20 24 24 O 1.45973 * 104.63916 * 334.16017 * 23 22 21 25 25 C 1.34483 * 109.93205 * 29.79538 * 24 23 22 26 26 O 1.20826 * 125.35841 * 159.59402 * 25 24 23 27 27 C 1.47333 * 125.66665 * 174.37695 * 18 16 15 28 28 H 0.96999 * 120.00233 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.97369 * 359.97159 * 11 10 9 30 30 H 1.08006 * 119.77982 * 179.97438 * 12 11 10 31 31 H 1.08007 * 119.80706 * 179.97438 * 13 12 11 32 32 H 1.07996 * 120.03097 * 180.30169 * 14 13 12 33 33 H 1.09000 * 110.33893 * 322.79639 * 19 18 16 34 34 H 1.08999 * 110.34299 * 84.94584 * 19 18 16 35 35 H 1.09001 * 111.02716 * 206.16031 * 20 19 18 36 36 H 1.09002 * 111.02917 * 82.25211 * 20 19 18 37 37 H 1.09001 * 110.94546 * 18.21025 * 22 21 20 38 38 H 1.08991 * 111.08367 * 254.37179 * 22 21 20 39 39 H 1.09005 * 110.42174 * 215.34471 * 23 22 21 40 40 H 1.08997 * 110.42592 * 92.98499 * 23 22 21 41 41 H 1.08995 * 109.96966 * 58.71866 * 27 18 16 42 42 H 1.08997 * 109.97032 * 297.45483 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8907 2.3965 1.2126 7 6 2.0096 -1.2020 -0.0005 8 1 3.0896 -1.2020 -0.0010 9 16 1.1286 -2.7280 -0.0005 10 6 2.4712 -3.8564 0.1695 11 6 3.7541 -3.3837 0.4266 12 6 4.8027 -4.2694 0.5597 13 6 4.5891 -5.6341 0.4384 14 6 3.3246 -6.1224 0.1901 15 6 2.2522 -5.2391 0.0463 16 6 0.8981 -5.7543 -0.2266 17 8 -0.0669 -5.2396 0.3051 18 7 0.7298 -6.7958 -1.0654 19 6 1.7911 -7.4367 -1.8650 20 6 1.0502 -8.1010 -3.0551 21 6 -0.2557 -8.5623 -2.3833 22 6 -1.3953 -8.6742 -3.4052 23 6 -2.0492 -10.0178 -2.9986 24 8 -0.9768 -10.7699 -2.3543 25 6 -0.1115 -9.9237 -1.7681 26 8 0.6611 -10.2139 -0.8855 27 6 -0.5449 -7.4832 -1.3364 28 1 -0.4850 0.8400 0.0004 29 1 3.9289 -2.3222 0.5219 30 1 5.7970 -3.8976 0.7588 31 1 5.4179 -6.3186 0.5441 32 1 3.1639 -7.1866 0.1016 33 1 2.4963 -6.6888 -2.2275 34 1 2.3100 -8.1896 -1.2718 35 1 1.6130 -8.9511 -3.4409 36 1 0.8493 -7.3765 -3.8443 37 1 -1.0041 -8.7225 -4.4214 38 1 -2.0999 -7.8495 -3.2987 39 1 -2.4088 -10.5481 -3.8805 40 1 -2.8671 -9.8465 -2.2988 41 1 -1.2751 -6.7736 -1.7253 42 1 -0.9217 -7.9425 -0.4226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772113436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:54 Heat of formation + Delta-G solvation = -74.008963 kcal Electronic energy + Delta-G solvation = -27988.401026 eV Core-core repulsion = 24025.138907 eV Total energy + Delta-G solvation = -3963.262119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85712 -39.64879 -37.86498 -37.71383 -36.87889 -33.33211 -32.78100 -30.80001 -30.35218 -30.26474 -28.64856 -25.87954 -25.58420 -23.49386 -23.03091 -22.33268 -21.92927 -20.20613 -19.65002 -17.98269 -17.40877 -17.28968 -16.85820 -16.16017 -16.03173 -15.75313 -15.43821 -15.06554 -14.61221 -14.33983 -14.22604 -14.01401 -13.66723 -13.38143 -13.27325 -12.95240 -12.92304 -12.78284 -12.62803 -12.31474 -12.08114 -11.92055 -11.65019 -11.51386 -11.34556 -11.23570 -11.12395 -10.97519 -10.88697 -10.34428 -10.21733 -9.81031 -9.61212 -9.53351 -8.75284 -8.56791 -8.32777 -8.31667 -6.57977 -6.49088 -4.21130 1.57718 1.71371 2.00385 2.86459 3.07248 3.09960 3.10459 3.18472 3.30937 3.38382 3.50784 3.77703 3.92946 4.01789 4.26385 4.36627 4.39590 4.59912 4.91120 4.91902 5.00574 5.03621 5.06641 5.16753 5.27577 5.30609 5.41360 5.41898 5.52343 5.57185 5.60558 5.65003 5.83449 5.88101 6.13558 6.32608 6.35859 6.39961 6.60651 6.87793 7.00942 7.11891 7.16662 7.42017 7.56718 7.72366 8.13440 8.61211 8.96749 10.55135 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.003048 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.884953 B = 9183.233399 C =10341.330424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.081 3.919 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.575 4.575 8 H 0.093 0.907 9 S 0.123 5.877 10 C -0.047 4.047 11 C -0.153 4.153 12 C -0.077 4.077 13 C -0.181 4.181 14 C -0.065 4.065 15 C -0.165 4.165 16 C 0.583 3.417 17 O -0.511 6.511 18 N -0.619 5.619 19 C 0.101 3.899 20 C -0.108 4.108 21 C -0.145 4.145 22 C -0.142 4.142 23 C 0.052 3.948 24 O -0.348 6.348 25 C 0.498 3.502 26 O -0.437 6.437 27 C 0.137 3.863 28 H 0.274 0.726 29 H 0.139 0.861 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.005 -17.461 -9.575 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.130 4.130 3 Si 0.748 3.252 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.722 4.722 8 H 0.111 0.889 9 S 0.385 5.615 10 C -0.166 4.166 11 C -0.178 4.178 12 C -0.099 4.099 13 C -0.206 4.206 14 C -0.085 4.085 15 C -0.180 4.180 16 C 0.374 3.626 17 O -0.386 6.386 18 N -0.356 5.356 19 C -0.022 4.022 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.180 4.180 23 C -0.022 4.022 24 O -0.265 6.265 25 C 0.337 3.663 26 O -0.318 6.318 27 C 0.014 3.986 28 H 0.084 0.916 29 H 0.157 0.843 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.794 -17.241 -8.904 19.488 hybrid contribution 1.879 1.209 0.097 2.236 sum 0.084 -16.032 -8.808 18.293 Atomic orbital electron populations 1.69986 1.06222 1.28296 1.44648 1.25112 0.95040 0.99674 0.93167 0.86047 0.79902 0.81104 0.78180 1.19113 1.20245 1.20194 1.23719 0.96537 0.92462 1.59486 0.88916 1.84272 1.03791 0.94904 1.78529 1.22932 1.00513 0.96523 0.96619 1.21413 0.91714 1.00888 1.03814 1.21101 0.98168 0.93358 0.97246 1.20677 0.96383 0.95267 1.08249 1.21056 0.92067 0.98134 0.97260 1.19032 0.92368 0.92749 1.13802 1.18014 0.89353 0.77564 0.77692 1.90825 1.41502 1.56373 1.49901 1.48360 1.08686 1.33377 1.45189 1.22497 0.91172 0.97366 0.91208 1.22656 0.92776 1.01195 0.97946 1.22270 0.99514 0.95128 0.97824 1.22973 0.96933 0.98609 0.99479 1.24246 0.88083 0.91463 0.98427 1.87156 1.36666 1.36910 1.65749 1.22430 0.78827 0.85623 0.79451 1.90739 1.35629 1.80807 1.24636 1.21550 0.88172 0.92233 0.96675 0.91597 0.84321 0.86921 0.86924 0.86520 0.89400 0.90644 0.89322 0.88583 0.88339 0.87568 0.86937 0.89298 0.89611 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.56 13.22 55.49 0.73 -23.82 16 2 C 0.08 2.20 5.49 -17.46 -0.10 2.10 16 3 Si 0.92 20.48 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.58 -15.72 8.98 30.94 0.28 -15.44 16 8 H 0.09 2.40 5.02 -52.49 -0.26 2.14 16 9 S 0.12 3.30 19.32 -107.50 -2.08 1.22 16 10 C -0.05 -1.08 6.13 -38.39 -0.24 -1.31 16 11 C -0.15 -3.19 9.21 -39.38 -0.36 -3.55 16 12 C -0.08 -1.32 10.03 -39.55 -0.40 -1.72 16 13 C -0.18 -2.85 10.02 -39.58 -0.40 -3.25 16 14 C -0.07 -1.09 8.24 -39.20 -0.32 -1.42 16 15 C -0.17 -3.35 5.36 -104.75 -0.56 -3.91 16 16 C 0.58 11.76 7.12 -12.52 -0.09 11.68 16 17 O -0.51 -12.18 15.44 5.27 0.08 -12.10 16 18 N -0.62 -9.59 3.34 -172.06 -0.57 -10.16 16 19 C 0.10 1.21 5.06 -2.35 -0.01 1.19 16 20 C -0.11 -0.92 5.90 -25.12 -0.15 -1.07 16 21 C -0.14 -1.32 0.75 -155.17 -0.12 -1.43 16 22 C -0.14 -0.75 6.40 -25.50 -0.16 -0.91 16 23 C 0.05 0.26 7.92 38.14 0.30 0.57 16 24 O -0.35 -3.36 11.08 -39.56 -0.44 -3.80 16 25 C 0.50 5.65 7.07 35.71 0.25 5.91 16 26 O -0.44 -6.52 17.50 -18.36 -0.32 -6.85 16 27 C 0.14 1.71 6.13 -3.54 -0.02 1.69 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.14 3.01 5.08 -52.49 -0.27 2.74 16 30 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.12 1.69 6.04 -52.49 -0.32 1.38 16 33 H 0.09 1.07 7.40 -51.93 -0.38 0.68 16 34 H 0.08 0.91 6.64 -51.93 -0.35 0.56 16 35 H 0.09 0.63 8.00 -51.93 -0.42 0.21 16 36 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.10 0.36 7.85 -51.93 -0.41 -0.05 16 38 H 0.11 0.47 7.37 -51.93 -0.38 0.09 16 39 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 1.03 7.39 -51.93 -0.38 0.65 16 42 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -34.97 357.96 -9.13 -44.10 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.82 Total: 1.44 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -2.09 Total: -10.88 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.16 Total: -33.98 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.68 Total: -22.75 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.08 Total: 1.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.97 -9.13 -44.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772113436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.907 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds