Wall clock time and date at job start Wed Apr 1 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33634 * 122.74957 * 2 1 4 4 S 1.76206 * 107.92103 * 179.97438 * 3 2 1 5 5 C 1.70975 * 90.28351 * 0.27484 * 4 3 2 6 6 C 1.50698 * 124.91763 * 179.84105 * 5 4 3 7 7 C 1.53006 * 109.46809 * 269.99886 * 6 5 4 8 8 N 1.46500 * 109.46811 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99797 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00429 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99890 * 180.02562 * 9 8 7 12 12 C 1.40022 * 119.99978 * 175.49109 * 11 9 8 13 13 C 1.38912 * 120.00434 * 214.85227 * 12 11 9 14 14 C 1.38006 * 120.00264 * 179.81401 * 13 12 11 15 15 C 1.38894 * 120.00178 * 0.43951 * 14 13 12 16 16 O 1.35783 * 120.00533 * 179.77099 * 15 14 13 17 17 C 1.34816 * 117.00635 * 185.36582 * 16 15 14 18 18 H 1.08007 * 119.99351 * 354.96341 * 17 16 15 19 19 C 1.38626 * 120.00004 * 174.95921 * 17 16 15 20 20 N 1.31572 * 120.00365 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99646 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47216 * 60.00261 * 21 19 17 23 23 H 1.48501 * 109.47380 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47608 * 300.00369 * 21 19 17 25 25 C 1.38905 * 120.00133 * 359.78965 * 15 14 13 26 26 C 1.38011 * 119.99972 * 0.02562 * 25 15 14 27 27 N 1.29031 * 110.16442 * 359.83803 * 5 4 3 28 28 H 1.09001 * 109.47230 * 269.73672 * 1 2 3 29 29 H 1.08999 * 109.47365 * 149.73313 * 1 2 3 30 30 H 1.08999 * 109.46996 * 29.72990 * 1 2 3 31 31 H 1.07997 * 126.04166 * 0.04037 * 3 2 1 32 32 H 1.09001 * 109.46836 * 29.99453 * 6 5 4 33 33 H 1.09003 * 109.47285 * 149.99880 * 6 5 4 34 34 H 1.08994 * 109.47049 * 299.99816 * 7 6 5 35 35 H 1.08997 * 109.46773 * 59.99925 * 7 6 5 36 36 H 0.96996 * 120.00034 * 359.97438 * 8 7 6 37 37 H 0.97003 * 120.00096 * 355.49687 * 11 9 8 38 38 H 1.08000 * 119.99753 * 359.97438 * 13 12 11 39 39 H 1.07998 * 120.00049 * 180.18742 * 14 13 12 40 40 H 0.96997 * 120.00105 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.00409 * 179.97438 * 25 15 14 42 42 H 1.07997 * 120.00153 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9333 0.6730 0.0007 5 6 3.5039 -0.9820 -0.0072 6 6 4.4834 -2.1272 -0.0141 7 6 4.8132 -2.5074 -1.4590 8 7 5.7659 -3.6204 -1.4657 9 6 6.2030 -4.1261 -2.6360 10 8 5.8065 -3.6591 -3.6862 11 7 7.0790 -5.1504 -2.6422 12 6 7.4608 -5.7378 -3.8545 13 6 7.7149 -7.1021 -3.9157 14 6 8.0874 -7.6817 -5.1115 15 6 8.2171 -6.8994 -6.2518 16 8 8.5882 -7.4688 -7.4273 17 6 8.8036 -6.6395 -8.4682 18 1 8.6011 -5.5834 -8.3679 19 6 9.2851 -7.1424 -9.6669 20 7 9.5314 -8.4290 -9.7891 21 14 9.5830 -5.9933 -11.1093 22 1 10.5824 -4.9646 -10.7245 23 1 10.0940 -6.7724 -12.2656 24 1 8.3087 -5.3294 -11.4847 25 6 7.9677 -5.5344 -6.1897 26 6 7.5914 -4.9553 -4.9948 27 7 2.2198 -1.1083 -0.0064 28 1 -0.3634 -0.0047 1.0277 29 1 -0.3634 -0.8876 -0.5180 30 1 -0.3633 0.8924 -0.5096 31 1 1.8392 2.1307 0.0006 32 1 5.3965 -1.8275 0.5002 33 1 4.0437 -2.9844 0.4959 34 1 3.9002 -2.8071 -1.9733 35 1 5.2528 -1.6502 -1.9689 36 1 6.0825 -3.9928 -0.6279 37 1 7.4450 -5.4806 -1.8067 38 1 7.6184 -7.7097 -3.0281 39 1 8.2820 -8.7429 -5.1597 40 1 9.8680 -8.7809 -10.6280 41 1 8.0689 -4.9260 -7.0762 42 1 7.3979 -3.8939 -4.9463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043558107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:52 Heat of formation + Delta-G solvation = 18.529593 kcal Electronic energy + Delta-G solvation = -25643.670020 eV Core-core repulsion = 21716.713425 eV Total energy + Delta-G solvation = -3926.956595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.43656 -40.18854 -38.74888 -36.84190 -35.65058 -33.96766 -33.12097 -32.11837 -30.49166 -30.13107 -28.07836 -27.72351 -25.42039 -24.88688 -22.56619 -22.18831 -21.56151 -20.50170 -20.14805 -18.61882 -17.99374 -17.78636 -17.34424 -16.56046 -15.88201 -15.86534 -15.37740 -14.90374 -14.72240 -14.47128 -14.43506 -13.98925 -13.69745 -13.56094 -13.52379 -13.34899 -13.14722 -12.88197 -12.81028 -12.51761 -12.24954 -11.95988 -11.72932 -11.65630 -11.50248 -11.45602 -10.96876 -10.72714 -10.41745 -10.09187 -9.95789 -9.83000 -9.65340 -9.22917 -9.14878 -9.11931 -8.64066 -8.14624 -6.87193 -6.39626 -3.97207 0.24649 0.92457 1.31339 2.18998 2.27773 2.33241 2.67347 3.17770 3.18244 3.21543 3.34314 3.59560 4.02075 4.21058 4.45723 4.49891 4.61078 4.63859 4.71709 4.82782 5.04579 5.14606 5.16412 5.25633 5.31171 5.41607 5.53360 5.59284 5.72589 5.79969 5.82407 6.17753 6.21301 6.25813 6.38220 6.69649 6.78933 7.00818 7.15086 7.22967 7.32185 7.38574 7.49873 7.84351 8.04188 8.06617 8.68158 9.06226 9.76158 10.78336 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.001653 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.579421 B =16938.093786 C =17772.499548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.068 3.932 3 C -0.264 4.264 4 S 0.129 5.871 5 C 0.055 3.945 6 C -0.055 4.055 7 C 0.148 3.852 8 N -0.749 5.749 9 C 0.700 3.300 10 O -0.573 6.573 11 N -0.674 5.674 12 C 0.052 3.948 13 C -0.095 4.095 14 C -0.178 4.178 15 C 0.145 3.855 16 O -0.178 6.178 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.220 4.220 26 C -0.064 4.064 27 N -0.466 5.466 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.177 0.823 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.396 0.604 37 H 0.398 0.602 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.270 0.730 41 H 0.130 0.870 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 16.863 24.698 31.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.403 4.403 4 S 0.384 5.616 5 C -0.223 4.223 6 C -0.097 4.097 7 C 0.021 3.979 8 N -0.406 5.406 9 C 0.400 3.600 10 O -0.449 6.449 11 N -0.321 5.321 12 C -0.041 4.041 13 C -0.115 4.115 14 C -0.198 4.198 15 C 0.091 3.909 16 O -0.081 6.081 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.240 4.240 26 C -0.084 4.084 27 N -0.181 5.181 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.195 0.805 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.229 0.771 37 H 0.232 0.768 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.079 0.921 41 H 0.147 0.853 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.823 16.949 23.475 30.911 hybrid contribution -0.517 0.391 0.160 0.668 sum -11.340 17.340 23.635 31.431 Atomic orbital electron populations 1.20382 0.86941 1.03613 1.03012 1.20338 0.98410 0.86390 1.01266 1.26866 0.95148 1.04107 1.14194 1.84089 1.07288 1.02634 1.67568 1.26650 0.93917 0.98114 1.03663 1.20419 0.96191 0.94821 0.98222 1.21051 0.93111 0.89176 0.94527 1.44968 1.49804 1.38489 1.07342 1.15904 0.79482 0.80601 0.83965 1.90950 1.61550 1.62300 1.30105 1.42262 1.45747 1.35473 1.08619 1.17031 1.10136 0.91475 0.85447 1.20322 1.02006 0.91994 0.97207 1.19963 1.09780 0.99583 0.90445 1.19408 0.92869 0.91334 0.87275 1.83972 1.74149 1.35125 1.14901 1.21283 1.44900 0.91334 0.89108 0.89101 1.25266 0.96330 0.96741 0.98184 1.70035 1.41534 1.11863 1.26495 0.85792 0.79109 0.79106 0.79496 1.19518 1.20336 1.19500 1.21110 1.09087 0.95201 0.98562 1.20882 0.96493 0.99665 0.91391 1.66118 1.04448 1.31788 1.15776 0.90580 0.90358 0.90619 0.80527 0.88767 0.87868 0.90725 0.91213 0.77088 0.76842 0.86799 0.86084 0.92051 0.85253 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.31 36.01 0.37 -0.10 16 2 C 0.07 0.58 6.74 -84.23 -0.57 0.01 16 3 C -0.26 -1.86 11.13 29.12 0.32 -1.54 16 4 S 0.13 0.90 23.18 -107.50 -2.49 -1.59 16 5 C 0.06 0.46 6.64 -13.46 -0.09 0.37 16 6 C -0.06 -0.35 5.91 -27.88 -0.16 -0.51 16 7 C 0.15 1.36 5.66 -4.04 -0.02 1.34 16 8 N -0.75 -7.08 5.56 -65.23 -0.36 -7.44 16 9 C 0.70 10.17 8.41 -86.92 -0.73 9.44 16 10 O -0.57 -11.07 13.78 5.29 0.07 -11.00 16 11 N -0.67 -9.19 5.35 -14.18 -0.08 -9.27 16 12 C 0.05 0.94 6.30 -83.62 -0.53 0.41 16 13 C -0.09 -1.67 9.96 -39.42 -0.39 -2.06 16 14 C -0.18 -3.75 9.98 -39.42 -0.39 -4.14 16 15 C 0.14 3.58 6.65 -39.09 -0.26 3.32 16 16 O -0.18 -5.15 9.76 -0.01 0.00 -5.15 16 17 C -0.39 -11.12 9.48 30.88 0.29 -10.82 16 18 H 0.09 2.42 5.20 -52.48 -0.27 2.14 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 21 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 C -0.22 -5.07 9.16 -39.42 -0.36 -5.43 16 26 C -0.06 -1.33 8.69 -39.42 -0.34 -1.67 16 27 N -0.47 -4.71 10.53 -8.06 -0.08 -4.79 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.40 2.25 8.49 -40.82 -0.35 1.90 16 37 H 0.40 3.74 8.84 -40.82 -0.36 3.38 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.13 3.01 5.63 -52.49 -0.30 2.71 16 42 H 0.13 2.62 6.22 -52.49 -0.33 2.29 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -36.26 377.04 -9.45 -45.71 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.96 Total: 7.16 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.96 Total: -10.40 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.24 Total: -46.36 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.07 Total: -16.16 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.26 -9.45 -45.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043558107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.237 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds