Wall clock time and date at job start Wed Apr 1 2020 05:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33634 * 122.74957 * 2 1 4 4 S 1.76206 * 107.92103 * 179.97438 * 3 2 1 5 5 C 1.70975 * 90.28351 * 0.27484 * 4 3 2 6 6 C 1.50698 * 124.91763 * 179.84105 * 5 4 3 7 7 C 1.53006 * 109.46809 * 269.99886 * 6 5 4 8 8 N 1.46500 * 109.46811 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99797 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00429 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99890 * 180.02562 * 9 8 7 12 12 C 1.40022 * 119.99978 * 175.49109 * 11 9 8 13 13 C 1.38912 * 120.00434 * 214.85227 * 12 11 9 14 14 C 1.38006 * 120.00264 * 179.81401 * 13 12 11 15 15 C 1.38894 * 120.00178 * 0.43951 * 14 13 12 16 16 O 1.35783 * 120.00533 * 179.77099 * 15 14 13 17 17 C 1.34816 * 117.00635 * 185.36582 * 16 15 14 18 18 H 1.08007 * 119.99351 * 354.96341 * 17 16 15 19 19 C 1.38626 * 120.00004 * 174.95921 * 17 16 15 20 20 N 1.31572 * 120.00365 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99646 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47216 * 60.00261 * 21 19 17 23 23 H 1.48501 * 109.47380 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47608 * 300.00369 * 21 19 17 25 25 C 1.38905 * 120.00133 * 359.78965 * 15 14 13 26 26 C 1.38011 * 119.99972 * 0.02562 * 25 15 14 27 27 N 1.29031 * 110.16442 * 359.83803 * 5 4 3 28 28 H 1.09001 * 109.47230 * 269.73672 * 1 2 3 29 29 H 1.08999 * 109.47365 * 149.73313 * 1 2 3 30 30 H 1.08999 * 109.46996 * 29.72990 * 1 2 3 31 31 H 1.07997 * 126.04166 * 0.04037 * 3 2 1 32 32 H 1.09001 * 109.46836 * 29.99453 * 6 5 4 33 33 H 1.09003 * 109.47285 * 149.99880 * 6 5 4 34 34 H 1.08994 * 109.47049 * 299.99816 * 7 6 5 35 35 H 1.08997 * 109.46773 * 59.99925 * 7 6 5 36 36 H 0.96996 * 120.00034 * 359.97438 * 8 7 6 37 37 H 0.97003 * 120.00096 * 355.49687 * 11 9 8 38 38 H 1.08000 * 119.99753 * 359.97438 * 13 12 11 39 39 H 1.07998 * 120.00049 * 180.18742 * 14 13 12 40 40 H 0.96997 * 120.00105 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.00409 * 179.97438 * 25 15 14 42 42 H 1.07997 * 120.00153 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9333 0.6730 0.0007 5 6 3.5039 -0.9820 -0.0072 6 6 4.4834 -2.1272 -0.0141 7 6 4.8132 -2.5074 -1.4590 8 7 5.7659 -3.6204 -1.4657 9 6 6.2030 -4.1261 -2.6360 10 8 5.8065 -3.6591 -3.6862 11 7 7.0790 -5.1504 -2.6422 12 6 7.4608 -5.7378 -3.8545 13 6 7.7149 -7.1021 -3.9157 14 6 8.0874 -7.6817 -5.1115 15 6 8.2171 -6.8994 -6.2518 16 8 8.5882 -7.4688 -7.4273 17 6 8.8036 -6.6395 -8.4682 18 1 8.6011 -5.5834 -8.3679 19 6 9.2851 -7.1424 -9.6669 20 7 9.5314 -8.4290 -9.7891 21 14 9.5830 -5.9933 -11.1093 22 1 10.5824 -4.9646 -10.7245 23 1 10.0940 -6.7724 -12.2656 24 1 8.3087 -5.3294 -11.4847 25 6 7.9677 -5.5344 -6.1897 26 6 7.5914 -4.9553 -4.9948 27 7 2.2198 -1.1083 -0.0064 28 1 -0.3634 -0.0047 1.0277 29 1 -0.3634 -0.8876 -0.5180 30 1 -0.3633 0.8924 -0.5096 31 1 1.8392 2.1307 0.0006 32 1 5.3965 -1.8275 0.5002 33 1 4.0437 -2.9844 0.4959 34 1 3.9002 -2.8071 -1.9733 35 1 5.2528 -1.6502 -1.9689 36 1 6.0825 -3.9928 -0.6279 37 1 7.4450 -5.4806 -1.8067 38 1 7.6184 -7.7097 -3.0281 39 1 8.2820 -8.7429 -5.1597 40 1 9.8680 -8.7809 -10.6280 41 1 8.0689 -4.9260 -7.0762 42 1 7.3979 -3.8939 -4.9463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043558107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:51 Heat of formation + Delta-G solvation = -7.874260 kcal Electronic energy + Delta-G solvation = -25644.814977 eV Core-core repulsion = 21716.713425 eV Total energy + Delta-G solvation = -3928.101552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63021 -40.88884 -40.43643 -38.39279 -36.67649 -35.40702 -34.21933 -33.77441 -31.82558 -31.21608 -29.32484 -28.50605 -27.27719 -25.86669 -23.95703 -23.26685 -22.82103 -21.82191 -20.73891 -20.07714 -19.47805 -18.93743 -18.47463 -18.13857 -16.89196 -16.73478 -16.31575 -16.17006 -16.02289 -15.76186 -15.52024 -15.34154 -15.24365 -15.14299 -14.60931 -14.34013 -14.08001 -14.02003 -13.67732 -13.56199 -13.32901 -13.24259 -13.18042 -12.84634 -12.69616 -12.46868 -12.41449 -12.25346 -12.14113 -11.48977 -11.31777 -10.93274 -10.66832 -10.54424 -10.41005 -10.15372 -9.80576 -9.67009 -8.55761 -8.45076 -6.11762 -0.31773 0.39279 0.55609 0.61986 0.76008 1.35361 1.45023 1.51018 1.53355 1.79561 2.09751 2.19314 2.85138 2.99394 3.17815 3.34051 3.54850 3.80112 3.95304 4.04824 4.12663 4.16092 4.25516 4.35198 4.49216 4.51356 4.69360 4.73124 4.75077 4.77809 4.81727 4.90482 5.01518 5.08829 5.16357 5.32387 5.34310 5.39824 5.45431 5.64226 5.73403 6.00983 6.05058 6.22238 6.75693 6.99429 7.06659 7.54151 7.79373 8.77307 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.001653 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.579421 B =16938.093786 C =17772.499548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.042 3.958 3 C -0.264 4.264 4 S 0.149 5.851 5 C 0.038 3.962 6 C -0.044 4.044 7 C 0.151 3.849 8 N -0.721 5.721 9 C 0.697 3.303 10 O -0.623 6.623 11 N -0.659 5.659 12 C 0.081 3.919 13 C -0.077 4.077 14 C -0.179 4.179 15 C 0.104 3.896 16 O -0.228 6.228 17 C -0.414 4.414 18 H 0.096 0.904 19 C -0.021 4.021 20 N -0.918 5.918 21 Si 1.015 2.985 22 H -0.258 1.258 23 H -0.268 1.268 24 H -0.261 1.261 25 C -0.229 4.229 26 C -0.077 4.077 27 N -0.498 5.498 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.201 0.799 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.419 0.581 37 H 0.425 0.575 38 H 0.168 0.832 39 H 0.129 0.871 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.603 18.461 27.925 35.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.403 4.403 4 S 0.405 5.595 5 C -0.241 4.241 6 C -0.085 4.085 7 C 0.025 3.975 8 N -0.379 5.379 9 C 0.397 3.603 10 O -0.503 6.503 11 N -0.309 5.309 12 C -0.014 4.014 13 C -0.097 4.097 14 C -0.199 4.199 15 C 0.054 3.946 16 O -0.135 6.135 17 C -0.490 4.490 18 H 0.114 0.886 19 C -0.218 4.218 20 N -0.556 5.556 21 Si 0.835 3.165 22 H -0.182 1.182 23 H -0.193 1.193 24 H -0.186 1.186 25 C -0.249 4.249 26 C -0.097 4.097 27 N -0.214 5.214 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.218 0.782 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.257 0.743 37 H 0.263 0.737 38 H 0.186 0.814 39 H 0.147 0.853 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.156 18.565 26.852 34.498 hybrid contribution -0.564 0.034 -0.448 0.721 sum -11.719 18.599 26.403 34.357 Atomic orbital electron populations 1.20440 0.85709 1.03915 1.03717 1.20744 0.99550 0.86559 1.02069 1.27222 0.95179 1.04944 1.12909 1.83969 1.07157 1.01566 1.66846 1.26960 0.93901 0.99342 1.03852 1.20405 0.97150 0.94801 0.96163 1.20998 0.91638 0.88423 0.96426 1.44681 1.48638 1.37738 1.06840 1.16114 0.79331 0.80365 0.84493 1.90939 1.63162 1.63748 1.32442 1.42022 1.45592 1.35075 1.08203 1.17139 1.06460 0.91624 0.86133 1.20751 0.99375 0.92019 0.97598 1.20313 1.09038 1.00001 0.90514 1.19942 0.94676 0.92543 0.87478 1.83932 1.77037 1.36210 1.16307 1.21717 1.45538 0.91839 0.89899 0.88649 1.26510 0.95751 0.98601 1.00963 1.70169 1.43788 1.14043 1.27571 0.84698 0.79428 0.76950 0.75452 1.18245 1.19279 1.18597 1.21094 1.09787 0.94792 0.99230 1.20946 0.97106 0.99974 0.91724 1.66143 1.05446 1.33062 1.16776 0.89634 0.91499 0.88874 0.78181 0.85759 0.86883 0.93360 0.92093 0.74278 0.73663 0.81413 0.85283 0.91826 0.86726 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.31 71.24 0.73 -0.12 16 2 C 0.04 0.67 6.74 41.52 0.28 0.95 16 3 C -0.26 -3.25 11.13 66.77 0.74 -2.51 16 4 S 0.15 1.81 23.18 -56.49 -1.31 0.50 16 5 C 0.04 0.57 6.64 88.52 0.59 1.16 16 6 C -0.04 -0.44 5.91 29.85 0.18 -0.26 16 7 C 0.15 2.52 5.66 86.38 0.49 3.01 16 8 N -0.72 -11.31 5.56 -478.54 -2.66 -13.97 16 9 C 0.70 18.41 8.41 179.05 1.51 19.91 16 10 O -0.62 -23.53 13.78 -4.00 -0.06 -23.58 16 11 N -0.66 -15.42 5.35 -317.05 -1.69 -17.12 16 12 C 0.08 2.70 6.30 38.15 0.24 2.94 16 13 C -0.08 -2.46 9.96 22.38 0.22 -2.24 16 14 C -0.18 -7.42 9.98 22.37 0.22 -7.20 16 15 C 0.10 5.33 6.65 22.59 0.15 5.48 16 16 O -0.23 -14.00 9.76 -22.96 -0.22 -14.22 16 17 C -0.41 -24.90 9.48 67.91 0.64 -24.25 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 19 C -0.02 -1.20 5.49 84.82 0.47 -0.73 16 20 N -0.92 -56.95 13.67 21.61 0.30 -56.66 16 21 Si 1.02 44.30 29.55 68.60 2.03 46.32 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 25 C -0.23 -10.96 9.16 22.38 0.20 -10.76 16 26 C -0.08 -3.17 8.69 22.38 0.19 -2.98 16 27 N -0.50 -9.63 10.53 -179.41 -1.89 -11.52 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.63 8.12 -2.39 -0.02 0.61 16 31 H 0.20 1.30 8.06 -2.91 -0.02 1.27 16 32 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.42 2.80 8.49 -92.71 -0.79 2.01 16 37 H 0.42 5.65 8.84 -92.71 -0.82 4.83 16 38 H 0.17 3.60 8.06 -2.91 -0.02 3.57 16 39 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 40 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.11 5.68 5.63 -2.91 -0.02 5.66 16 42 H 0.12 5.19 6.22 -2.91 -0.02 5.17 16 Total: -1.00 -85.72 377.04 0.84 -84.88 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.51 Total: 22.95 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 6.86 Total: -17.59 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -5.95 Total: -99.26 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.28 Total: -37.80 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.31 Total: 0.50 kcal Total: -85.72 0.84 -84.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043558107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.010 kcal (2) G-P(sol) polarization free energy of solvation -85.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds