Wall clock time and date at job start Wed Apr 1 2020 04:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00213 * 2 1 4 4 H 1.48496 * 109.46666 * 239.99687 * 3 2 1 5 5 H 1.48500 * 109.46750 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47395 * 119.99137 * 3 2 1 7 7 C 1.37878 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00084 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99809 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46905 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99989 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99884 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00063 * 180.02562 * 11 10 9 14 14 O 1.45196 * 109.47315 * 179.97438 * 13 11 10 15 15 C 1.34755 * 117.00289 * 179.97438 * 14 13 11 16 16 O 1.21533 * 119.99899 * 359.97438 * 15 14 13 17 17 C 1.47260 * 120.00185 * 179.97438 * 15 14 13 18 18 C 1.41373 * 126.42556 * 0.02562 * 17 15 14 19 19 N 1.30466 * 108.06075 * 179.72008 * 18 17 15 20 20 N 1.39941 * 108.93210 * 0.40856 * 19 18 17 21 21 C 1.40213 * 125.75522 * 179.84681 * 20 19 18 22 22 C 1.38812 * 120.07535 * 179.41628 * 21 20 19 23 23 C 1.38118 * 119.95784 * 180.25611 * 22 21 20 24 24 C 1.38303 * 120.11737 * 0.04480 * 23 22 21 25 25 C 1.38242 * 120.15151 * 359.95112 * 24 23 22 26 26 C 1.38338 * 120.04345 * 0.03075 * 25 24 23 27 27 F 1.35100 * 120.05750 * 179.97438 * 26 25 24 28 28 C 1.34476 * 108.48099 * 359.58538 * 20 19 18 29 29 H 0.96998 * 120.00086 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47285 * 59.99779 * 9 7 2 31 31 H 1.08996 * 109.47196 * 299.99368 * 9 7 2 32 32 H 0.96999 * 119.99503 * 0.02562 * 10 9 7 33 33 H 1.09002 * 109.47670 * 59.99605 * 13 11 10 34 34 H 1.09004 * 109.47199 * 299.99960 * 13 11 10 35 35 H 1.08008 * 125.97105 * 359.97438 * 18 17 15 36 36 H 1.07997 * 120.01638 * 0.25129 * 22 21 20 37 37 H 1.08008 * 119.94452 * 180.02562 * 23 22 21 38 38 H 1.07995 * 119.92599 * 179.97438 * 24 23 22 39 39 H 1.07994 * 119.98307 * 180.02562 * 25 24 23 40 40 H 1.08007 * 126.31455 * 180.20664 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0288 0.0006 14 8 2.0070 -7.2863 0.0005 15 6 2.7409 -8.4164 0.0004 16 8 3.9546 -8.3529 0.0000 17 6 2.0723 -9.7285 0.0009 18 6 0.6777 -9.9601 0.0009 19 7 0.4818 -11.2499 -0.0047 20 7 1.7223 -11.8976 0.0009 21 6 1.9220 -13.2854 0.0005 22 6 3.2100 -13.8029 -0.0057 23 6 3.4039 -15.1704 -0.0114 24 6 2.3168 -16.0254 -0.0119 25 6 1.0320 -15.5151 -0.0056 26 6 0.8304 -14.1465 0.0005 27 9 -0.4251 -13.6475 0.0061 28 6 2.6905 -10.9643 0.0009 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 3.1566 -3.4354 0.0009 33 1 3.3590 -5.9713 0.8910 34 1 3.3603 -5.9710 -0.8889 35 1 -0.0913 -9.2016 0.0009 36 1 4.0600 -13.1366 -0.0061 37 1 4.4062 -15.5728 -0.0158 38 1 2.4720 -17.0942 -0.0168 39 1 0.1852 -16.1853 -0.0056 40 1 3.7550 -11.1469 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060492135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:28 Heat of formation + Delta-G solvation = -49.669868 kcal Electronic energy + Delta-G solvation = -27762.366873 eV Core-core repulsion = 23266.239751 eV Total energy + Delta-G solvation = -4496.127121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.25919 -42.14279 -40.26821 -39.44117 -38.61090 -36.26245 -34.33138 -34.22860 -32.40017 -31.56041 -30.88736 -30.01387 -28.99897 -26.73841 -24.93089 -23.75984 -22.99382 -22.34953 -21.46566 -20.43620 -19.91433 -19.20639 -17.91976 -17.46456 -17.20053 -16.70026 -16.69211 -16.34315 -16.26891 -15.65183 -15.36523 -15.31478 -15.21298 -15.03436 -14.48686 -14.47574 -14.23560 -13.78540 -13.29358 -13.10494 -13.06785 -12.86848 -12.65834 -12.54309 -12.01124 -11.96680 -11.75598 -11.47908 -11.02485 -11.00660 -10.89795 -10.67247 -10.58228 -10.33722 -9.74926 -9.56441 -9.44571 -9.16409 -8.76809 -8.72139 -7.97424 -6.18419 -4.25969 -0.01918 0.42801 1.20115 1.57379 1.77871 2.48162 2.87804 2.95605 3.20222 3.25147 3.30057 3.31454 3.43444 3.77459 4.02529 4.08607 4.13346 4.29109 4.34858 4.51278 4.55738 4.68048 4.79627 4.90654 5.08979 5.17622 5.26071 5.26547 5.29606 5.35512 5.38287 5.43844 5.63427 5.91936 5.99378 6.32276 6.40933 7.00775 7.23988 7.32120 7.47248 7.60215 7.71253 7.93203 8.51313 8.72197 8.97760 9.40374 10.91630 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.037489 B = 0.001543 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.711629 B =18145.874472 C =18872.127671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.051 3.949 14 O -0.322 6.322 15 C 0.546 3.454 16 O -0.519 6.519 17 C -0.260 4.260 18 C 0.117 3.883 19 N -0.280 5.280 20 N -0.313 5.313 21 C 0.117 3.883 22 C -0.111 4.111 23 C -0.104 4.104 24 C -0.095 4.095 25 C -0.135 4.135 26 C 0.110 3.890 27 F -0.112 7.112 28 C 0.134 3.866 29 H 0.267 0.733 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.393 0.607 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.211 0.789 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.800 -34.042 -0.010 35.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.283 3.717 12 O -0.411 6.411 13 C -0.026 4.026 14 O -0.237 6.237 15 C 0.391 3.609 16 O -0.410 6.410 17 C -0.272 4.272 18 C -0.072 4.072 19 N -0.097 5.097 20 N -0.085 5.085 21 C 0.024 3.976 22 C -0.131 4.131 23 C -0.123 4.123 24 C -0.113 4.113 25 C -0.154 4.154 26 C 0.088 3.912 27 F -0.090 7.090 28 C -0.013 4.013 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.226 0.774 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.228 0.772 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.157 -34.960 -0.015 35.685 hybrid contribution 1.438 1.944 0.005 2.418 sum 8.595 -33.016 -0.011 34.116 Atomic orbital electron populations 1.69960 1.06115 1.27514 1.48576 1.24946 0.94924 0.99460 0.94602 0.86449 0.79395 0.82212 0.78706 1.20048 1.21054 1.20044 1.21176 0.93304 0.90333 1.53654 0.91810 1.19173 0.88162 0.81504 0.98046 1.46358 1.11508 1.05341 1.72473 1.19878 0.89121 0.83975 0.78766 1.90710 1.16313 1.84547 1.49531 1.22872 0.94362 0.80680 1.04690 1.86587 1.39716 1.13702 1.83670 1.19832 0.84871 0.83851 0.72397 1.90842 1.14547 1.88037 1.47534 1.19313 0.93756 0.90668 1.23501 1.24651 0.95907 0.93380 0.93255 1.77655 0.99896 1.07225 1.24882 1.45581 1.05468 1.03738 1.53713 1.17667 0.94450 0.78751 1.06716 1.20863 0.93818 0.96801 1.01648 1.21081 1.00146 0.91734 0.99306 1.21173 0.91227 1.00912 0.98032 1.21199 0.99499 0.92403 1.02311 1.17343 0.79033 0.91352 1.03451 1.91631 1.36325 1.87819 1.93193 1.22940 0.96128 0.87031 0.95186 0.92321 0.95240 0.95232 0.77429 0.88402 0.88398 0.77216 0.83894 0.83946 0.84118 0.83529 0.78637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.81 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.55 -14.60 9.28 -34.44 -0.32 -14.92 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 10 N -0.71 -14.49 5.55 -61.47 -0.34 -14.83 16 11 C 0.50 9.91 7.91 -10.99 -0.09 9.82 16 12 O -0.53 -12.90 16.50 -14.11 -0.23 -13.13 16 13 C 0.05 0.77 5.95 36.00 0.21 0.99 16 14 O -0.32 -5.07 9.60 -47.32 -0.45 -5.53 16 15 C 0.55 7.64 7.95 34.40 0.27 7.91 16 16 O -0.52 -7.78 16.69 -19.29 -0.32 -8.10 16 17 C -0.26 -3.13 6.13 -105.06 -0.64 -3.77 16 18 C 0.12 1.41 11.87 -16.94 -0.20 1.21 16 19 N -0.28 -3.56 10.70 30.88 0.33 -3.23 16 20 N -0.31 -3.32 3.77 -10.14 -0.04 -3.36 16 21 C 0.12 1.00 6.69 -83.51 -0.56 0.44 16 22 C -0.11 -0.57 9.44 -39.41 -0.37 -0.94 16 23 C -0.10 -0.35 10.04 -39.60 -0.40 -0.74 16 24 C -0.09 -0.32 10.04 -39.56 -0.40 -0.72 16 25 C -0.13 -0.72 10.02 -39.54 -0.40 -1.12 16 26 C 0.11 0.95 7.29 -39.25 -0.29 0.67 16 27 F -0.11 -1.27 15.52 2.25 0.03 -1.23 16 28 C 0.13 1.29 10.61 -16.42 -0.17 1.12 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.39 6.74 8.32 -40.82 -0.34 6.40 16 33 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.21 2.24 8.06 -52.48 -0.42 1.82 16 36 H 0.14 0.43 6.71 -52.49 -0.35 0.08 16 37 H 0.14 0.10 8.06 -52.48 -0.42 -0.32 16 38 H 0.14 0.10 8.06 -52.49 -0.42 -0.33 16 39 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.20 1.19 7.01 -52.48 -0.37 0.82 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -36.27 369.31 -7.19 -43.45 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -3.98 Total: 1.71 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -3.47 Total: 8.14 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.69 Total: -46.50 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.01 Total: -26.76 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.03 Total: -1.23 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.27 -7.19 -43.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060492135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.216 kcal (2) G-P(sol) polarization free energy of solvation -36.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds