Wall clock time and date at job start Wed Apr 1 2020 04:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00213 * 2 1 4 4 H 1.48496 * 109.46666 * 239.99687 * 3 2 1 5 5 H 1.48500 * 109.46750 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47395 * 119.99137 * 3 2 1 7 7 C 1.37878 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00084 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99809 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46905 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99989 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99884 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00063 * 180.02562 * 11 10 9 14 14 O 1.45196 * 109.47315 * 179.97438 * 13 11 10 15 15 C 1.34755 * 117.00289 * 179.97438 * 14 13 11 16 16 O 1.21533 * 119.99899 * 359.97438 * 15 14 13 17 17 C 1.47260 * 120.00185 * 179.97438 * 15 14 13 18 18 C 1.41373 * 126.42556 * 0.02562 * 17 15 14 19 19 N 1.30466 * 108.06075 * 179.72008 * 18 17 15 20 20 N 1.39941 * 108.93210 * 0.40856 * 19 18 17 21 21 C 1.40213 * 125.75522 * 179.84681 * 20 19 18 22 22 C 1.38812 * 120.07535 * 179.41628 * 21 20 19 23 23 C 1.38118 * 119.95784 * 180.25611 * 22 21 20 24 24 C 1.38303 * 120.11737 * 0.04480 * 23 22 21 25 25 C 1.38242 * 120.15151 * 359.95112 * 24 23 22 26 26 C 1.38338 * 120.04345 * 0.03075 * 25 24 23 27 27 F 1.35100 * 120.05750 * 179.97438 * 26 25 24 28 28 C 1.34476 * 108.48099 * 359.58538 * 20 19 18 29 29 H 0.96998 * 120.00086 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47285 * 59.99779 * 9 7 2 31 31 H 1.08996 * 109.47196 * 299.99368 * 9 7 2 32 32 H 0.96999 * 119.99503 * 0.02562 * 10 9 7 33 33 H 1.09002 * 109.47670 * 59.99605 * 13 11 10 34 34 H 1.09004 * 109.47199 * 299.99960 * 13 11 10 35 35 H 1.08008 * 125.97105 * 359.97438 * 18 17 15 36 36 H 1.07997 * 120.01638 * 0.25129 * 22 21 20 37 37 H 1.08008 * 119.94452 * 180.02562 * 23 22 21 38 38 H 1.07995 * 119.92599 * 179.97438 * 24 23 22 39 39 H 1.07994 * 119.98307 * 180.02562 * 25 24 23 40 40 H 1.08007 * 126.31455 * 180.20664 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0288 0.0006 14 8 2.0070 -7.2863 0.0005 15 6 2.7409 -8.4164 0.0004 16 8 3.9546 -8.3529 0.0000 17 6 2.0723 -9.7285 0.0009 18 6 0.6777 -9.9601 0.0009 19 7 0.4818 -11.2499 -0.0047 20 7 1.7223 -11.8976 0.0009 21 6 1.9220 -13.2854 0.0005 22 6 3.2100 -13.8029 -0.0057 23 6 3.4039 -15.1704 -0.0114 24 6 2.3168 -16.0254 -0.0119 25 6 1.0320 -15.5151 -0.0056 26 6 0.8304 -14.1465 0.0005 27 9 -0.4251 -13.6475 0.0061 28 6 2.6905 -10.9643 0.0009 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 3.1566 -3.4354 0.0009 33 1 3.3590 -5.9713 0.8910 34 1 3.3603 -5.9710 -0.8889 35 1 -0.0913 -9.2016 0.0009 36 1 4.0600 -13.1366 -0.0061 37 1 4.4062 -15.5728 -0.0158 38 1 2.4720 -17.0942 -0.0168 39 1 0.1852 -16.1853 -0.0056 40 1 3.7550 -11.1469 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060492135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:27 Heat of formation + Delta-G solvation = -73.363278 kcal Electronic energy + Delta-G solvation = -27763.394296 eV Core-core repulsion = 23266.239751 eV Total energy + Delta-G solvation = -4497.154545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.93893 -42.94647 -41.42282 -40.28366 -39.85146 -37.45135 -36.15895 -34.96733 -34.39866 -32.19187 -31.53698 -30.94086 -30.22336 -28.47665 -25.75776 -24.55715 -24.35213 -23.43698 -22.14882 -21.61684 -21.34053 -19.98639 -19.14871 -18.53911 -18.10460 -17.80505 -17.77520 -17.30657 -17.11246 -16.93818 -16.84159 -16.30535 -16.18719 -15.90317 -15.83664 -15.68282 -14.98404 -14.68983 -14.44778 -14.37226 -14.07461 -14.02910 -13.75606 -13.65904 -13.46623 -12.96881 -12.94415 -12.67037 -12.58523 -12.22952 -12.21653 -11.86775 -11.68560 -11.60621 -11.50840 -10.88789 -10.79195 -10.50946 -10.00820 -9.90647 -9.35132 -8.28006 -6.44786 -0.58103 0.04468 0.42114 0.84073 0.96439 1.36254 1.46049 1.49084 1.57512 1.58472 1.96521 2.35537 2.51014 2.59157 2.94716 3.07187 3.23460 3.46349 3.65936 3.68616 3.78731 3.82805 4.03930 4.09245 4.11331 4.22225 4.27815 4.35344 4.50851 4.84111 4.93024 5.08443 5.12788 5.16673 5.23734 5.24737 5.31327 5.43789 5.49598 5.65030 5.83538 5.85670 6.17736 6.59986 6.64632 6.81278 7.22376 7.38462 8.83829 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.037489 B = 0.001543 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.711629 B =18145.874472 C =18872.127671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.499 3.501 12 O -0.584 6.584 13 C 0.063 3.937 14 O -0.343 6.343 15 C 0.553 3.447 16 O -0.529 6.529 17 C -0.288 4.288 18 C 0.109 3.891 19 N -0.313 5.313 20 N -0.310 5.310 21 C 0.080 3.920 22 C -0.106 4.106 23 C -0.094 4.094 24 C -0.082 4.082 25 C -0.138 4.138 26 C 0.072 3.928 27 F -0.139 7.139 28 C 0.156 3.844 29 H 0.269 0.731 30 H -0.008 1.008 31 H -0.008 1.008 32 H 0.413 0.587 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.210 0.790 36 H 0.167 0.833 37 H 0.180 0.820 38 H 0.176 0.824 39 H 0.160 0.840 40 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.043 -36.069 -0.018 38.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.464 6.464 13 C -0.013 4.013 14 O -0.258 6.258 15 C 0.399 3.601 16 O -0.420 6.420 17 C -0.300 4.300 18 C -0.079 4.079 19 N -0.130 5.130 20 N -0.081 5.081 21 C -0.012 4.012 22 C -0.126 4.126 23 C -0.112 4.112 24 C -0.100 4.100 25 C -0.157 4.157 26 C 0.051 3.949 27 F -0.118 7.118 28 C 0.007 3.993 29 H 0.078 0.922 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.249 0.751 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.227 0.773 36 H 0.185 0.815 37 H 0.198 0.802 38 H 0.194 0.806 39 H 0.177 0.823 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 11.447 -37.039 -0.023 38.767 hybrid contribution 0.137 2.291 0.006 2.295 sum 11.583 -34.748 -0.016 36.627 Atomic orbital electron populations 1.70129 1.08271 1.28651 1.49814 1.26053 0.95753 1.03872 0.93822 0.85198 0.77876 0.76589 0.79494 1.18660 1.21236 1.18652 1.21597 0.94467 0.90404 1.53127 0.89507 1.18624 0.88603 0.83833 0.94570 1.46022 1.11711 1.04677 1.72576 1.20712 0.89315 0.84736 0.76747 1.90689 1.18980 1.85315 1.51451 1.22758 0.92467 0.78690 1.07413 1.86578 1.40753 1.14343 1.84155 1.19953 0.84699 0.83641 0.71802 1.90822 1.14681 1.88056 1.48481 1.19307 0.93722 0.90720 1.26282 1.24713 0.96433 0.93422 0.93366 1.77604 1.01869 1.07485 1.26050 1.45757 1.04870 1.04847 1.52667 1.18152 0.95936 0.77622 1.09463 1.21278 0.92878 0.98209 1.00265 1.21595 1.01868 0.90785 0.96954 1.21666 0.90117 1.02797 0.95376 1.21484 1.01286 0.91101 1.01866 1.17895 0.78257 0.92956 1.05796 1.91551 1.38099 1.88371 1.93763 1.23464 0.97386 0.85808 0.92600 0.92249 0.99008 0.98998 0.75067 0.85517 0.85513 0.77317 0.81510 0.80248 0.80633 0.82281 0.74872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 2 C 0.00 0.26 5.46 84.66 0.46 0.73 16 3 Si 0.99 41.95 29.54 68.60 2.03 43.98 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.56 -29.93 9.28 25.60 0.24 -29.69 16 8 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.44 5.43 85.63 0.46 14.91 16 10 N -0.70 -28.84 5.55 -466.78 -2.59 -31.43 16 11 C 0.50 20.08 7.91 87.65 0.69 20.78 16 12 O -0.58 -29.60 16.50 15.76 0.26 -29.34 16 13 C 0.06 1.82 5.95 71.23 0.42 2.25 16 14 O -0.34 -10.79 9.60 -50.27 -0.48 -11.27 16 15 C 0.55 15.09 7.95 70.19 0.56 15.65 16 16 O -0.53 -14.81 16.69 19.73 0.33 -14.48 16 17 C -0.29 -6.94 6.13 -20.15 -0.12 -7.06 16 18 C 0.11 2.81 11.87 85.67 1.02 3.83 16 19 N -0.31 -8.46 10.70 -56.20 -0.60 -9.07 16 20 N -0.31 -6.56 3.77 -186.00 -0.70 -7.26 16 21 C 0.08 1.31 6.69 38.13 0.26 1.56 16 22 C -0.11 -0.77 9.44 22.38 0.21 -0.56 16 23 C -0.09 -0.21 10.04 22.26 0.22 0.01 16 24 C -0.08 -0.24 10.04 22.29 0.22 -0.02 16 25 C -0.14 -1.29 10.02 22.29 0.22 -1.07 16 26 C 0.07 1.27 7.29 22.48 0.16 1.44 16 27 F -0.14 -3.45 15.52 44.97 0.70 -2.76 16 28 C 0.16 2.81 10.61 84.27 0.89 3.70 16 29 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.41 13.61 8.32 -92.71 -0.77 12.84 16 33 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.21 5.05 8.06 -2.91 -0.02 5.03 16 36 H 0.17 0.30 6.71 -2.91 -0.02 0.28 16 37 H 0.18 -0.85 8.06 -2.91 -0.02 -0.88 16 38 H 0.18 -0.67 8.06 -2.91 -0.02 -0.70 16 39 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 40 H 0.24 2.08 7.01 -2.91 -0.02 2.06 16 Total: -1.00 -84.53 369.31 5.50 -79.04 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.35 Total: 11.75 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: 5.93 Total: 26.44 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -3.61 Total: -103.35 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: 0.11 Total: -55.09 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.70 Total: -2.76 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -84.53 5.50 -79.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060492135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.674 kcal (2) G-P(sol) polarization free energy of solvation -84.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds