Wall clock time and date at job start Wed Apr 1 2020 04:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86803 * 120.00073 * 2 1 4 4 H 1.48503 * 109.46631 * 270.00107 * 3 2 1 5 5 H 1.48501 * 109.47075 * 29.99856 * 3 2 1 6 6 H 1.48497 * 109.47124 * 150.00362 * 3 2 1 7 7 C 1.38657 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00180 * 359.97438 * 7 2 1 9 9 O 1.34831 * 119.99963 * 179.97438 * 7 2 1 10 10 C 1.35753 * 117.00009 * 186.43378 * 9 7 2 11 11 C 1.38878 * 120.06613 * 188.42822 * 10 9 7 12 12 C 1.38097 * 119.92808 * 180.25045 * 11 10 9 13 13 C 1.38307 * 120.06754 * 359.46966 * 12 11 10 14 14 C 1.50705 * 119.92832 * 180.29946 * 13 12 11 15 15 S 1.81004 * 109.47152 * 90.00297 * 14 13 12 16 16 C 1.76201 * 99.99864 * 179.97438 * 15 14 13 17 17 N 1.31284 * 126.48517 * 359.68496 * 16 15 14 18 18 N 1.28524 * 109.85973 * 179.88051 * 17 16 15 19 19 C 1.30302 * 110.07600 * 0.39246 * 18 17 16 20 20 C 1.50697 * 126.33881 * 179.76183 * 19 18 17 21 21 O 1.42903 * 109.46892 * 269.99545 * 20 19 18 22 22 N 1.36531 * 126.48293 * 179.97438 * 16 15 14 23 23 C 1.46505 * 127.14650 * 359.96227 * 22 16 15 24 24 C 1.53003 * 117.49258 * 15.68051 * 23 22 16 25 25 C 1.53002 * 117.49689 * 307.02226 * 23 22 16 26 26 C 1.38296 * 120.13724 * 0.27534 * 13 12 11 27 27 C 1.38093 * 120.07123 * 359.97438 * 26 13 12 28 28 H 0.96995 * 119.99682 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03789 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.96730 * 179.74803 * 12 11 10 31 31 H 1.09000 * 109.46603 * 209.99823 * 14 13 12 32 32 H 1.08996 * 109.47212 * 330.00038 * 14 13 12 33 33 H 1.08994 * 109.47542 * 30.00003 * 20 19 18 34 34 H 1.09000 * 109.46528 * 150.00507 * 20 19 18 35 35 H 0.96703 * 113.99681 * 180.02562 * 21 20 19 36 36 H 1.08991 * 115.55167 * 161.34802 * 23 22 16 37 37 H 1.08999 * 117.50027 * 0.02562 * 24 23 22 38 38 H 1.09008 * 117.49503 * 145.02308 * 24 23 22 39 39 H 1.08995 * 117.49880 * 214.97429 * 25 23 22 40 40 H 1.08995 * 117.50051 * 359.97438 * 25 23 22 41 41 H 1.08008 * 119.96604 * 180.02562 * 26 13 12 42 42 H 1.08002 * 120.03619 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.6999 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3572 -1.2009 0.0000 10 6 3.9734 -2.4029 -0.1350 11 6 5.3487 -2.5023 0.0307 12 6 5.9733 -3.7256 -0.1124 13 6 5.2292 -4.8530 -0.4094 14 6 5.9133 -6.1876 -0.5582 15 16 5.9710 -7.0185 1.0488 16 6 6.7958 -8.5075 0.5939 17 7 7.2091 -8.8350 -0.6084 18 7 7.7712 -9.9904 -0.5772 19 6 7.7431 -10.4689 0.6344 20 6 8.2942 -11.7980 1.0826 21 8 7.2794 -12.7975 0.9679 22 7 7.1212 -9.5415 1.4241 23 6 6.8586 -9.6377 2.8622 24 6 5.8401 -8.6654 3.4608 25 6 7.3330 -8.4821 3.7457 26 6 3.8589 -4.7582 -0.5697 27 6 3.2291 -3.5369 -0.4330 28 1 -0.4849 0.8400 0.0004 29 1 5.9297 -1.6230 0.2666 30 1 7.0433 -3.8028 0.0122 31 1 5.3582 -6.8034 -1.2658 32 1 6.9282 -6.0367 -0.9259 33 1 9.1437 -12.0691 0.4559 34 1 8.6172 -11.7257 2.1212 35 1 7.5644 -13.6805 1.2405 36 1 6.9019 -10.6426 3.2818 37 1 5.3652 -7.9545 2.7846 38 1 5.2137 -9.0307 4.2746 39 1 7.6879 -8.7269 4.7468 40 1 7.8408 -7.6506 3.2572 41 1 3.2805 -5.6405 -0.8013 42 1 2.1588 -3.4636 -0.5579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271212623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:12 Heat of formation + Delta-G solvation = 62.233408 kcal Electronic energy + Delta-G solvation = -26381.667414 eV Core-core repulsion = 22456.605959 eV Total energy + Delta-G solvation = -3925.061455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.16079 -39.30150 -38.13119 -37.39074 -36.97165 -33.10675 -32.59878 -31.71023 -31.32752 -30.35502 -27.34762 -26.44268 -24.77862 -24.60865 -23.10618 -22.19848 -22.12498 -21.24456 -20.42487 -18.23710 -18.15716 -17.98980 -17.36767 -16.96037 -16.17968 -15.41376 -15.32909 -15.13808 -15.05670 -14.92569 -14.40299 -14.23848 -13.94758 -13.84549 -13.51726 -13.16710 -12.76564 -12.66366 -12.37187 -12.30952 -12.25734 -12.07352 -11.82182 -11.50846 -11.30139 -11.03695 -11.02147 -10.84063 -10.77654 -10.64569 -10.29497 -10.22661 -10.20686 -9.90820 -9.52126 -8.93311 -8.38275 -7.75377 -7.41617 -6.50409 -4.16330 0.83539 1.22732 1.79757 2.03855 2.10818 2.48600 2.49696 3.14615 3.17276 3.21456 3.35176 3.58064 3.89603 4.16782 4.17729 4.23859 4.31023 4.34275 4.40875 4.68409 4.75574 4.96122 5.00472 5.05816 5.11293 5.12076 5.14849 5.40189 5.53579 5.55326 5.60486 5.66783 5.69857 5.80882 6.04201 6.21867 6.39743 6.44634 6.67777 6.91599 6.99083 7.10436 7.18352 7.48664 7.70000 7.93664 8.38299 8.84122 9.44900 10.56696 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025373 B = 0.002024 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.263969 B =13831.663892 C =14091.398897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.211 6.211 10 C 0.167 3.833 11 C -0.192 4.192 12 C -0.054 4.054 13 C -0.179 4.179 14 C -0.049 4.049 15 S 0.007 5.993 16 C 0.165 3.835 17 N -0.291 5.291 18 N -0.264 5.264 19 C 0.173 3.827 20 C 0.170 3.830 21 O -0.564 6.564 22 N -0.428 5.428 23 C 0.046 3.954 24 C -0.174 4.174 25 C -0.171 4.171 26 C -0.050 4.050 27 C -0.221 4.221 28 H 0.281 0.719 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.389 0.611 36 H 0.149 0.851 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.255 -21.574 8.647 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.125 0.875 9 O -0.115 6.115 10 C 0.113 3.887 11 C -0.212 4.212 12 C -0.074 4.074 13 C -0.182 4.182 14 C -0.196 4.196 15 S 0.239 5.761 16 C -0.209 4.209 17 N -0.135 5.135 18 N -0.106 5.106 19 C -0.096 4.096 20 C 0.090 3.910 21 O -0.370 6.370 22 N -0.121 5.121 23 C -0.059 4.059 24 C -0.212 4.212 25 C -0.209 4.209 26 C -0.070 4.070 27 C -0.240 4.240 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.238 0.762 36 H 0.167 0.833 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 15.675 -20.325 8.024 26.892 hybrid contribution 0.586 -0.397 0.287 0.764 sum 16.261 -20.721 8.310 27.620 Atomic orbital electron populations 1.69646 1.05612 1.28697 1.47119 1.24510 0.95061 0.98973 0.95473 0.86170 0.80356 0.81283 0.79062 1.19807 1.20666 1.18262 1.20789 0.76754 0.96716 1.52232 0.87528 1.83599 1.22750 1.25995 1.79185 1.19215 0.91664 0.85718 0.92082 1.20195 0.92164 0.98056 1.10771 1.20521 0.98548 0.91345 0.96998 1.18662 0.93889 0.92127 1.13563 1.22456 1.04840 0.96789 0.95523 1.86029 1.68584 1.04880 1.16568 1.27221 1.05820 0.97690 0.90158 1.74744 1.14769 1.07910 1.16096 1.73940 1.16394 1.04154 1.16112 1.24475 1.02295 0.94858 0.87967 1.20078 0.89547 0.81352 1.00003 1.86568 1.39298 1.20815 1.90304 1.45868 1.43437 1.14190 1.08640 1.22133 1.08516 0.98612 0.76599 1.23808 0.93204 1.00923 1.03263 1.23555 0.97626 0.99136 1.00614 1.20698 0.93091 0.96924 0.96305 1.21270 1.01409 0.92313 1.08994 0.90890 0.86188 0.86550 0.88589 0.88636 0.89562 0.91470 0.76211 0.83324 0.85901 0.86198 0.86630 0.87223 0.86845 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.63 13.96 55.48 0.77 -23.86 16 2 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 3 Si 0.91 21.11 28.62 -169.99 -4.86 16.24 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.39 -10.64 9.87 30.89 0.30 -10.33 16 8 H 0.11 2.98 5.61 -52.49 -0.29 2.68 16 9 O -0.21 -5.38 8.59 0.04 0.00 -5.38 16 10 C 0.17 3.69 6.64 -39.11 -0.26 3.43 16 11 C -0.19 -3.62 9.99 -39.40 -0.39 -4.02 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 13 C -0.18 -2.86 5.14 -104.57 -0.54 -3.39 16 14 C -0.05 -0.69 5.36 36.01 0.19 -0.50 16 15 S 0.01 0.08 17.89 -107.50 -1.92 -1.84 16 16 C 0.16 2.31 7.90 -88.35 -0.70 1.61 16 17 N -0.29 -4.74 11.60 30.68 0.36 -4.38 16 18 N -0.26 -4.12 12.18 33.00 0.40 -3.72 16 19 C 0.17 2.11 7.70 -153.99 -1.19 0.93 16 20 C 0.17 1.20 7.34 36.00 0.26 1.46 16 21 O -0.56 -4.17 13.64 -35.23 -0.48 -4.65 16 22 N -0.43 -5.02 3.16 -106.46 -0.34 -5.36 16 23 C 0.05 0.36 6.61 -67.93 -0.45 -0.09 16 24 C -0.17 -1.34 9.71 -26.69 -0.26 -1.60 16 25 C -0.17 -1.14 10.06 -26.69 -0.27 -1.41 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 27 C -0.22 -4.56 9.11 -39.40 -0.36 -4.92 16 28 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.10 1.36 8.08 -51.92 -0.42 0.94 16 32 H 0.10 1.30 8.08 -51.92 -0.42 0.88 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.27 7.78 -51.93 -0.40 -0.14 16 35 H 0.39 0.60 9.12 45.56 0.42 1.02 16 36 H 0.15 0.79 7.83 -51.93 -0.41 0.38 16 37 H 0.12 1.23 4.29 -27.55 -0.12 1.11 16 38 H 0.12 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 0.90 8.00 -51.93 -0.42 0.48 16 41 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.14 2.95 5.79 -52.49 -0.30 2.65 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -33.94 372.76 -9.00 -42.95 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.04 Total: 4.05 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -4.51 Total: -19.67 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 1.20 Total: -37.32 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.48 Total: -10.03 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.86 Total: 16.24 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -1.92 Total: -1.84 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.94 -9.00 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271212623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.182 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds