Wall clock time and date at job start Wed Apr 1 2020 04:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86803 * 120.00073 * 2 1 4 4 H 1.48503 * 109.46631 * 270.00107 * 3 2 1 5 5 H 1.48501 * 109.47075 * 29.99856 * 3 2 1 6 6 H 1.48497 * 109.47124 * 150.00362 * 3 2 1 7 7 C 1.38657 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00180 * 359.97438 * 7 2 1 9 9 O 1.34831 * 119.99963 * 179.97438 * 7 2 1 10 10 C 1.35753 * 117.00009 * 186.43378 * 9 7 2 11 11 C 1.38878 * 120.06613 * 188.42822 * 10 9 7 12 12 C 1.38097 * 119.92808 * 180.25045 * 11 10 9 13 13 C 1.38307 * 120.06754 * 359.46966 * 12 11 10 14 14 C 1.50705 * 119.92832 * 180.29946 * 13 12 11 15 15 S 1.81004 * 109.47152 * 90.00297 * 14 13 12 16 16 C 1.76201 * 99.99864 * 179.97438 * 15 14 13 17 17 N 1.31284 * 126.48517 * 359.68496 * 16 15 14 18 18 N 1.28524 * 109.85973 * 179.88051 * 17 16 15 19 19 C 1.30302 * 110.07600 * 0.39246 * 18 17 16 20 20 C 1.50697 * 126.33881 * 179.76183 * 19 18 17 21 21 O 1.42903 * 109.46892 * 269.99545 * 20 19 18 22 22 N 1.36531 * 126.48293 * 179.97438 * 16 15 14 23 23 C 1.46505 * 127.14650 * 359.96227 * 22 16 15 24 24 C 1.53003 * 117.49258 * 15.68051 * 23 22 16 25 25 C 1.53002 * 117.49689 * 307.02226 * 23 22 16 26 26 C 1.38296 * 120.13724 * 0.27534 * 13 12 11 27 27 C 1.38093 * 120.07123 * 359.97438 * 26 13 12 28 28 H 0.96995 * 119.99682 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03789 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.96730 * 179.74803 * 12 11 10 31 31 H 1.09000 * 109.46603 * 209.99823 * 14 13 12 32 32 H 1.08996 * 109.47212 * 330.00038 * 14 13 12 33 33 H 1.08994 * 109.47542 * 30.00003 * 20 19 18 34 34 H 1.09000 * 109.46528 * 150.00507 * 20 19 18 35 35 H 0.96703 * 113.99681 * 180.02562 * 21 20 19 36 36 H 1.08991 * 115.55167 * 161.34802 * 23 22 16 37 37 H 1.08999 * 117.50027 * 0.02562 * 24 23 22 38 38 H 1.09008 * 117.49503 * 145.02308 * 24 23 22 39 39 H 1.08995 * 117.49880 * 214.97429 * 25 23 22 40 40 H 1.08995 * 117.50051 * 359.97438 * 25 23 22 41 41 H 1.08008 * 119.96604 * 180.02562 * 26 13 12 42 42 H 1.08002 * 120.03619 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.6999 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3572 -1.2009 0.0000 10 6 3.9734 -2.4029 -0.1350 11 6 5.3487 -2.5023 0.0307 12 6 5.9733 -3.7256 -0.1124 13 6 5.2292 -4.8530 -0.4094 14 6 5.9133 -6.1876 -0.5582 15 16 5.9710 -7.0185 1.0488 16 6 6.7958 -8.5075 0.5939 17 7 7.2091 -8.8350 -0.6084 18 7 7.7712 -9.9904 -0.5772 19 6 7.7431 -10.4689 0.6344 20 6 8.2942 -11.7980 1.0826 21 8 7.2794 -12.7975 0.9679 22 7 7.1212 -9.5415 1.4241 23 6 6.8586 -9.6377 2.8622 24 6 5.8401 -8.6654 3.4608 25 6 7.3330 -8.4821 3.7457 26 6 3.8589 -4.7582 -0.5697 27 6 3.2291 -3.5369 -0.4330 28 1 -0.4849 0.8400 0.0004 29 1 5.9297 -1.6230 0.2666 30 1 7.0433 -3.8028 0.0122 31 1 5.3582 -6.8034 -1.2658 32 1 6.9282 -6.0367 -0.9259 33 1 9.1437 -12.0691 0.4559 34 1 8.6172 -11.7257 2.1212 35 1 7.5644 -13.6805 1.2405 36 1 6.9019 -10.6426 3.2818 37 1 5.3652 -7.9545 2.7846 38 1 5.2137 -9.0307 4.2746 39 1 7.6879 -8.7269 4.7468 40 1 7.8408 -7.6506 3.2572 41 1 3.2805 -5.6405 -0.8013 42 1 2.1588 -3.4636 -0.5579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271212623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:10 Heat of formation + Delta-G solvation = 39.901002 kcal Electronic energy + Delta-G solvation = -26382.635820 eV Core-core repulsion = 22456.605959 eV Total energy + Delta-G solvation = -3926.029861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.10220 -40.94816 -38.81903 -38.57701 -37.88974 -34.54471 -33.94261 -33.00164 -32.42278 -31.87945 -28.39994 -27.75949 -26.46265 -25.42159 -23.75175 -23.66640 -23.01820 -22.38827 -21.59990 -19.86866 -19.17205 -18.94742 -18.69850 -17.84889 -17.08332 -16.73063 -16.39916 -16.20221 -15.99041 -15.85367 -15.81150 -15.61745 -15.32366 -15.07115 -14.69025 -14.55605 -14.33277 -14.09949 -13.62845 -13.26214 -13.15087 -13.07102 -12.91733 -12.73659 -12.56769 -12.50260 -12.42803 -12.03414 -11.94242 -11.69700 -11.38352 -11.31084 -11.22205 -11.14690 -10.87894 -10.69854 -9.87644 -9.04161 -8.77115 -8.51218 -6.23779 -0.24715 0.33250 0.51663 0.51891 1.15234 1.32581 1.34526 1.38447 1.50012 1.52797 2.27704 2.57893 2.74773 2.97048 3.06699 3.08775 3.28397 3.64709 3.69441 3.71637 3.74190 3.85496 3.86644 4.10080 4.17209 4.26081 4.27146 4.50624 4.55274 4.62383 4.65748 4.71810 4.74362 4.79273 4.91280 4.97408 5.03419 5.18193 5.32048 5.50498 5.62387 5.64065 5.74710 5.85153 6.15682 6.81709 6.82734 7.38856 7.54913 8.60089 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025373 B = 0.002024 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.263969 B =13831.663892 C =14091.398897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.398 4.398 8 H 0.081 0.919 9 O -0.239 6.239 10 C 0.130 3.870 11 C -0.187 4.187 12 C -0.047 4.047 13 C -0.151 4.151 14 C -0.058 4.058 15 S 0.042 5.958 16 C 0.148 3.852 17 N -0.326 5.326 18 N -0.311 5.311 19 C 0.180 3.820 20 C 0.171 3.829 21 O -0.587 6.587 22 N -0.426 5.426 23 C 0.032 3.968 24 C -0.183 4.183 25 C -0.157 4.157 26 C -0.053 4.053 27 C -0.233 4.233 28 H 0.285 0.715 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.414 0.586 36 H 0.181 0.819 37 H 0.098 0.902 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.092 0.908 41 H 0.134 0.866 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.509 -23.895 10.605 32.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.474 4.474 8 H 0.099 0.901 9 O -0.146 6.146 10 C 0.080 3.920 11 C -0.206 4.206 12 C -0.066 4.066 13 C -0.154 4.154 14 C -0.205 4.205 15 S 0.273 5.727 16 C -0.227 4.227 17 N -0.170 5.170 18 N -0.152 5.152 19 C -0.090 4.090 20 C 0.091 3.909 21 O -0.397 6.397 22 N -0.119 5.119 23 C -0.070 4.070 24 C -0.221 4.221 25 C -0.195 4.195 26 C -0.073 4.073 27 C -0.252 4.252 28 H 0.095 0.905 29 H 0.154 0.846 30 H 0.174 0.826 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.267 0.733 36 H 0.198 0.802 37 H 0.116 0.884 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.111 0.889 41 H 0.151 0.849 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 18.961 -22.699 9.988 31.217 hybrid contribution -0.171 -0.175 -0.266 0.362 sum 18.789 -22.873 9.722 31.157 Atomic orbital electron populations 1.69731 1.06935 1.29677 1.49702 1.25311 0.95894 1.02244 0.95428 0.85216 0.78940 0.77347 0.79236 1.19271 1.19216 1.18365 1.20682 0.77979 0.96102 1.52681 0.90139 1.83542 1.21303 1.27542 1.82254 1.19739 0.93193 0.85252 0.93834 1.20508 0.90749 0.99790 1.09559 1.20941 1.00431 0.90016 0.95260 1.18938 0.93198 0.93399 1.09830 1.22418 1.05015 0.95672 0.97362 1.85953 1.68600 1.04400 1.13699 1.27280 1.06364 0.98602 0.90406 1.74618 1.15958 1.08864 1.17600 1.73841 1.18349 1.04587 1.18462 1.25463 1.00267 0.96165 0.87125 1.20356 0.89128 0.79047 1.02354 1.86489 1.39986 1.22470 1.90801 1.46152 1.42545 1.13222 1.09967 1.22677 1.09026 1.00646 0.74690 1.23853 0.94148 1.00553 1.03549 1.23645 0.96458 0.97761 1.01612 1.20901 0.94121 0.96315 0.95958 1.21248 1.00523 0.93541 1.09931 0.90521 0.84630 0.82639 0.88751 0.87681 0.88314 0.87581 0.73311 0.80172 0.88437 0.83722 0.83345 0.88910 0.84852 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.42 13.96 21.61 0.30 -54.12 16 2 C 0.01 0.58 5.49 84.83 0.47 1.04 16 3 Si 0.97 44.74 28.62 68.60 1.96 46.70 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.40 -23.08 9.87 67.92 0.67 -22.41 16 8 H 0.08 4.90 5.61 -2.91 -0.02 4.89 16 9 O -0.24 -12.70 8.59 -22.79 -0.20 -12.89 16 10 C 0.13 5.91 6.64 22.58 0.15 6.06 16 11 C -0.19 -6.82 9.99 22.39 0.22 -6.60 16 12 C -0.05 -1.39 9.69 22.25 0.22 -1.18 16 13 C -0.15 -4.54 5.14 -19.83 -0.10 -4.64 16 14 C -0.06 -1.50 5.36 71.24 0.38 -1.12 16 15 S 0.04 0.99 17.89 -56.49 -1.01 -0.02 16 16 C 0.15 3.94 7.90 179.55 1.42 5.36 16 17 N -0.33 -10.41 11.60 -56.86 -0.66 -11.07 16 18 N -0.31 -9.47 12.18 -49.52 -0.60 -10.07 16 19 C 0.18 4.01 7.70 137.63 1.06 5.07 16 20 C 0.17 1.81 7.34 71.23 0.52 2.33 16 21 O -0.59 -6.83 13.64 -148.98 -2.03 -8.86 16 22 N -0.43 -8.98 3.16 -490.74 -1.55 -10.52 16 23 C 0.03 0.39 6.61 44.99 0.30 0.69 16 24 C -0.18 -2.23 9.71 30.62 0.30 -1.94 16 25 C -0.16 -1.49 10.06 30.62 0.31 -1.18 16 26 C -0.05 -1.84 9.69 22.25 0.22 -1.62 16 27 C -0.23 -10.04 9.11 22.39 0.20 -9.83 16 28 H 0.29 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 31 H 0.09 2.55 8.08 -2.40 -0.02 2.53 16 32 H 0.10 2.60 8.08 -2.40 -0.02 2.58 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.11 0.30 7.78 -2.39 -0.02 0.28 16 35 H 0.41 -0.14 9.12 -74.06 -0.68 -0.82 16 36 H 0.18 1.00 7.83 -2.39 -0.02 0.98 16 37 H 0.10 1.75 4.29 -17.89 -0.08 1.67 16 38 H 0.14 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.09 1.25 8.00 -2.39 -0.02 1.23 16 41 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 42 H 0.11 5.30 5.79 -2.91 -0.02 5.29 16 Total: -1.00 -79.43 372.76 2.88 -76.55 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.34 Total: 14.27 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 6.33 Total: -29.96 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -2.51 Total: -85.78 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -2.23 Total: -21.75 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.96 Total: 46.70 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -1.01 Total: -0.02 kcal Total: -79.43 2.88 -76.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271212623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.447 kcal (2) G-P(sol) polarization free energy of solvation -79.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds