Wall clock time and date at job start Wed Apr 1 2020 03:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86797 * 119.99801 * 2 1 4 4 H 1.48497 * 109.47234 * 185.01856 * 3 2 1 5 5 H 1.48498 * 109.47628 * 305.02098 * 3 2 1 6 6 H 1.48510 * 109.47030 * 65.01805 * 3 2 1 7 7 C 1.39943 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99988 * 192.39792 * 7 2 1 9 9 C 1.41393 * 119.99927 * 12.39747 * 7 2 1 10 10 C 1.40740 * 120.24624 * 27.76102 * 9 7 2 11 11 C 1.37595 * 119.74440 * 180.28094 * 10 9 7 12 12 C 1.38659 * 120.25161 * 359.70010 * 11 10 9 13 13 C 1.38618 * 120.49686 * 0.02562 * 12 11 10 14 14 C 1.37632 * 120.24904 * 359.97438 * 13 12 11 15 15 S 1.76202 * 120.12638 * 180.02562 * 14 13 12 16 16 O 1.42099 * 106.40234 * 1.48253 * 15 14 13 17 17 O 1.42101 * 106.40517 * 228.55684 * 15 14 13 18 18 N 1.65602 * 107.21842 * 115.01750 * 15 14 13 19 19 C 1.39990 * 120.00301 * 295.68591 * 18 15 14 20 20 C 1.40602 * 125.95329 * 174.69610 * 19 18 15 21 21 C 1.34699 * 107.75317 * 179.97438 * 20 19 18 22 22 N 1.35332 * 108.02020 * 0.07205 * 21 20 19 23 23 N 1.31396 * 125.94752 * 354.67635 * 19 18 15 24 24 C 1.46609 * 124.53038 * 179.86758 * 22 21 20 25 25 C 1.53231 * 108.80803 * 342.73902 * 24 22 21 26 26 C 1.53149 * 109.56272 * 50.57068 * 25 24 22 27 27 C 1.50893 * 127.66923 * 180.08518 * 21 20 19 28 28 H 0.96997 * 120.00034 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.12473 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.87616 * 179.73066 * 11 10 9 31 31 H 1.07997 * 119.75419 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.87068 * 179.97438 * 13 12 11 33 33 H 0.97007 * 120.00117 * 115.67786 * 18 15 14 34 34 H 1.07999 * 126.12186 * 359.92852 * 20 19 18 35 35 H 1.09000 * 109.58056 * 102.50943 * 24 22 21 36 36 H 1.08997 * 109.58082 * 222.78064 * 24 22 21 37 37 H 1.08995 * 109.44554 * 290.54508 * 25 24 22 38 38 H 1.09001 * 109.45693 * 170.60415 * 25 24 22 39 39 H 1.09004 * 109.51669 * 170.63643 * 26 25 24 40 40 H 1.09006 * 109.51939 * 50.46226 * 26 25 24 41 41 H 1.09003 * 109.71743 * 44.54601 * 27 21 20 42 42 H 1.09002 * 109.72328 * 283.89007 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.6975 1.3492 -0.1225 5 1 1.7939 2.4482 -1.1465 6 1 1.9775 2.3421 1.2692 7 6 2.0080 -1.2119 -0.0005 8 1 3.0691 -1.2228 0.2003 9 6 1.3258 -2.4220 -0.2640 10 6 0.1682 -2.4235 -1.0644 11 6 -0.4909 -3.6063 -1.3093 12 6 -0.0151 -4.7945 -0.7761 13 6 1.1274 -4.8057 0.0089 14 6 1.8027 -3.6345 0.2670 15 16 3.2549 -3.6526 1.2648 16 8 3.4840 -5.0104 1.6154 17 8 3.0945 -2.6181 2.2257 18 7 4.5202 -3.1998 0.2970 19 6 4.8963 -4.0039 -0.7854 20 6 5.8757 -3.6917 -1.7447 21 6 5.9398 -4.7177 -2.6151 22 7 5.0370 -5.6498 -2.2308 23 7 4.3957 -5.1822 -1.0816 24 6 4.8033 -6.9177 -2.9287 25 6 5.3946 -6.8217 -4.3391 26 6 6.8398 -6.3217 -4.2562 27 6 6.8403 -4.8511 -3.8185 28 1 -0.4850 0.8400 0.0004 29 1 -0.2037 -1.4993 -1.4813 30 1 -1.3819 -3.6092 -1.9197 31 1 -0.5384 -5.7183 -0.9739 32 1 1.4888 -5.7370 0.4195 33 1 5.0007 -2.3772 0.4801 34 1 6.4696 -2.7903 -1.7781 35 1 5.2871 -7.7288 -2.3846 36 1 3.7319 -7.1081 -2.9915 37 1 4.8032 -6.1257 -4.9339 38 1 5.3771 -7.8056 -4.8079 39 1 7.3127 -6.4108 -5.2343 40 1 7.3905 -6.9184 -3.5288 41 1 7.8532 -4.5460 -3.5555 42 1 6.4660 -4.2259 -4.6291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285106043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:33 Heat of formation + Delta-G solvation = 16.644613 kcal Electronic energy + Delta-G solvation = -28955.337720 eV Core-core repulsion = 25028.299386 eV Total energy + Delta-G solvation = -3927.038333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26223 -37.52322 -36.91125 -36.14606 -34.83847 -34.11387 -33.79626 -32.31112 -30.18147 -29.51828 -29.27036 -27.81076 -25.49879 -24.12777 -22.30069 -21.57804 -21.13867 -20.84252 -19.46212 -18.05781 -17.64654 -16.95603 -16.54448 -16.08869 -15.88501 -15.41112 -15.34787 -14.44918 -14.38706 -14.25736 -14.13508 -13.90947 -13.31321 -13.24126 -13.12941 -12.88010 -12.71009 -12.37029 -11.87254 -11.60371 -11.41469 -11.29929 -11.23942 -11.20097 -11.12417 -11.07268 -11.01772 -10.99871 -10.73710 -10.66103 -10.45949 -10.07927 -9.83364 -9.40819 -9.16824 -8.44068 -7.95638 -7.91915 -7.52988 -6.99864 -4.71787 1.41706 2.14851 2.40540 2.62155 2.79287 2.98553 3.04299 3.15722 3.19319 3.79437 3.82859 4.31175 4.44596 4.46914 4.53483 4.66114 4.73550 5.06414 5.14446 5.21931 5.34384 5.43494 5.50064 5.56949 5.60949 5.63922 5.67352 5.88739 5.92895 6.03113 6.14504 6.17628 6.33467 6.47494 6.79421 6.90058 7.02988 7.13699 7.28170 7.35478 7.41355 7.57762 7.72101 7.88334 7.94477 8.12025 8.33527 8.53506 8.70987 9.93039 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.004404 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.212965 B = 6355.643564 C = 6763.766298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.081 3.919 3 Si 0.915 3.085 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.447 4.447 8 H 0.083 0.917 9 C 0.187 3.813 10 C -0.161 4.161 11 C -0.074 4.074 12 C -0.253 4.253 13 C 0.015 3.985 14 C -0.761 4.761 15 S 2.689 3.311 16 O -0.973 6.973 17 O -0.957 6.957 18 N -1.019 6.019 19 C 0.330 3.670 20 C -0.282 4.282 21 C 0.095 3.905 22 N -0.364 5.364 23 N -0.300 5.300 24 C 0.137 3.863 25 C -0.136 4.136 26 C -0.125 4.125 27 C -0.057 4.057 28 H 0.287 0.713 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.428 0.572 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.513 -6.299 -10.458 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.140 4.140 3 Si 0.739 3.261 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.476 4.476 8 H 0.101 0.899 9 C 0.182 3.818 10 C -0.181 4.181 11 C -0.093 4.093 12 C -0.273 4.273 13 C -0.005 4.005 14 C -0.857 4.857 15 S 2.788 3.212 16 O -0.963 6.963 17 O -0.948 6.948 18 N -0.768 5.768 19 C 0.071 3.929 20 C -0.315 4.315 21 C -0.033 4.033 22 N -0.149 5.149 23 N -0.128 5.128 24 C 0.016 3.984 25 C -0.174 4.174 26 C -0.163 4.163 27 C -0.096 4.096 28 H 0.098 0.902 29 H 0.142 0.858 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.263 0.737 34 H 0.166 0.834 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.444 -7.514 -9.206 15.820 hybrid contribution 0.436 1.904 -0.703 2.076 sum 10.880 -5.610 -9.909 15.749 Atomic orbital electron populations 1.69794 1.07762 1.29976 1.32355 1.25939 0.94886 1.01811 0.91394 0.86125 0.81118 0.79953 0.78943 1.17775 1.19513 1.19179 1.19822 0.96731 0.91017 1.39986 0.89867 1.17019 0.90281 0.89635 0.84871 1.21456 0.98304 0.96852 1.01496 1.20884 0.97375 0.93517 0.97543 1.20457 1.01267 0.96760 1.08856 1.20188 0.92788 0.95048 0.92457 1.29624 1.24247 1.00675 1.31177 1.01608 0.73362 0.72674 0.73517 1.93485 1.85271 1.35566 1.81973 1.93569 1.85548 1.58118 1.57536 1.53310 1.50308 1.32751 1.40424 1.18729 0.94691 0.90143 0.89348 1.20662 1.08369 1.02937 0.99532 1.20807 0.94340 0.90459 0.97692 1.48171 1.29646 1.15960 1.21096 1.77656 1.21820 1.10967 1.02365 1.21712 1.02963 0.82364 0.91383 1.21950 0.96803 1.03286 0.95398 1.21670 0.96508 0.95771 1.02372 1.20436 0.98291 0.97403 0.93473 0.90212 0.85775 0.88948 0.88878 0.87370 0.73669 0.83396 0.90141 0.88854 0.90493 0.89221 0.90454 0.91159 0.89151 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.39 10.86 55.55 0.60 -18.79 16 2 C 0.08 1.98 5.23 -17.34 -0.09 1.89 16 3 Si 0.92 18.17 29.58 -169.99 -5.03 13.15 16 4 H -0.25 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.45 -11.57 7.67 -37.74 -0.29 -11.86 16 8 H 0.08 2.02 5.72 -52.49 -0.30 1.72 16 9 C 0.19 4.97 5.55 -106.82 -0.59 4.37 16 10 C -0.16 -4.14 8.67 -38.87 -0.34 -4.48 16 11 C -0.07 -1.74 10.02 -39.66 -0.40 -2.14 16 12 C -0.25 -5.85 10.05 -39.29 -0.39 -6.24 16 13 C 0.02 0.37 9.53 -39.66 -0.38 -0.01 16 14 C -0.76 -19.42 5.89 -38.87 -0.23 -19.65 16 15 S 2.69 63.95 4.74 -107.50 -0.51 63.44 16 16 O -0.97 -24.25 16.12 -57.17 -0.92 -25.18 16 17 O -0.96 -24.66 16.52 -57.17 -0.94 -25.60 16 18 N -1.02 -20.37 5.06 31.45 0.16 -20.21 16 19 C 0.33 6.47 7.73 -154.33 -1.19 5.28 16 20 C -0.28 -4.47 10.78 -39.94 -0.43 -4.90 16 21 C 0.09 1.32 6.58 -82.21 -0.54 0.78 16 22 N -0.36 -5.78 4.04 -56.94 -0.23 -6.01 16 23 N -0.30 -6.13 11.61 31.47 0.37 -5.76 16 24 C 0.14 1.56 7.27 -3.86 -0.03 1.53 16 25 C -0.14 -1.04 5.93 -26.54 -0.16 -1.20 16 26 C -0.13 -0.88 5.97 -26.43 -0.16 -1.04 16 27 C -0.06 -0.50 6.29 -27.56 -0.17 -0.68 16 28 H 0.29 6.40 8.30 -40.82 -0.34 6.06 16 29 H 0.12 3.19 6.21 -52.49 -0.33 2.87 16 30 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.11 2.52 7.33 -52.48 -0.38 2.14 16 33 H 0.43 7.16 8.73 -34.48 -0.30 6.86 16 34 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -34.48 358.56 -11.59 -46.07 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.09 Total: 11.83 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: -5.39 Total: -38.34 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.90 Total: -50.77 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -1.87 Total: -50.78 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: 63.95 SS G_CDS: -0.51 Total: 63.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.48 -11.59 -46.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285106043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.716 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds