Wall clock time and date at job start Wed Apr 1 2020 03:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86797 * 119.99801 * 2 1 4 4 H 1.48497 * 109.47234 * 185.01856 * 3 2 1 5 5 H 1.48498 * 109.47628 * 305.02098 * 3 2 1 6 6 H 1.48510 * 109.47030 * 65.01805 * 3 2 1 7 7 C 1.39943 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99988 * 192.39792 * 7 2 1 9 9 C 1.41393 * 119.99927 * 12.39747 * 7 2 1 10 10 C 1.40740 * 120.24624 * 27.76102 * 9 7 2 11 11 C 1.37595 * 119.74440 * 180.28094 * 10 9 7 12 12 C 1.38659 * 120.25161 * 359.70010 * 11 10 9 13 13 C 1.38618 * 120.49686 * 0.02562 * 12 11 10 14 14 C 1.37632 * 120.24904 * 359.97438 * 13 12 11 15 15 S 1.76202 * 120.12638 * 180.02562 * 14 13 12 16 16 O 1.42099 * 106.40234 * 1.48253 * 15 14 13 17 17 O 1.42101 * 106.40517 * 228.55684 * 15 14 13 18 18 N 1.65602 * 107.21842 * 115.01750 * 15 14 13 19 19 C 1.39990 * 120.00301 * 295.68591 * 18 15 14 20 20 C 1.40602 * 125.95329 * 174.69610 * 19 18 15 21 21 C 1.34699 * 107.75317 * 179.97438 * 20 19 18 22 22 N 1.35332 * 108.02020 * 0.07205 * 21 20 19 23 23 N 1.31396 * 125.94752 * 354.67635 * 19 18 15 24 24 C 1.46609 * 124.53038 * 179.86758 * 22 21 20 25 25 C 1.53231 * 108.80803 * 342.73902 * 24 22 21 26 26 C 1.53149 * 109.56272 * 50.57068 * 25 24 22 27 27 C 1.50893 * 127.66923 * 180.08518 * 21 20 19 28 28 H 0.96997 * 120.00034 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.12473 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.87616 * 179.73066 * 11 10 9 31 31 H 1.07997 * 119.75419 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.87068 * 179.97438 * 13 12 11 33 33 H 0.97007 * 120.00117 * 115.67786 * 18 15 14 34 34 H 1.07999 * 126.12186 * 359.92852 * 20 19 18 35 35 H 1.09000 * 109.58056 * 102.50943 * 24 22 21 36 36 H 1.08997 * 109.58082 * 222.78064 * 24 22 21 37 37 H 1.08995 * 109.44554 * 290.54508 * 25 24 22 38 38 H 1.09001 * 109.45693 * 170.60415 * 25 24 22 39 39 H 1.09004 * 109.51669 * 170.63643 * 26 25 24 40 40 H 1.09006 * 109.51939 * 50.46226 * 26 25 24 41 41 H 1.09003 * 109.71743 * 44.54601 * 27 21 20 42 42 H 1.09002 * 109.72328 * 283.89007 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.6975 1.3492 -0.1225 5 1 1.7939 2.4482 -1.1465 6 1 1.9775 2.3421 1.2692 7 6 2.0080 -1.2119 -0.0005 8 1 3.0691 -1.2228 0.2003 9 6 1.3258 -2.4220 -0.2640 10 6 0.1682 -2.4235 -1.0644 11 6 -0.4909 -3.6063 -1.3093 12 6 -0.0151 -4.7945 -0.7761 13 6 1.1274 -4.8057 0.0089 14 6 1.8027 -3.6345 0.2670 15 16 3.2549 -3.6526 1.2648 16 8 3.4840 -5.0104 1.6154 17 8 3.0945 -2.6181 2.2257 18 7 4.5202 -3.1998 0.2970 19 6 4.8963 -4.0039 -0.7854 20 6 5.8757 -3.6917 -1.7447 21 6 5.9398 -4.7177 -2.6151 22 7 5.0370 -5.6498 -2.2308 23 7 4.3957 -5.1822 -1.0816 24 6 4.8033 -6.9177 -2.9287 25 6 5.3946 -6.8217 -4.3391 26 6 6.8398 -6.3217 -4.2562 27 6 6.8403 -4.8511 -3.8185 28 1 -0.4850 0.8400 0.0004 29 1 -0.2037 -1.4993 -1.4813 30 1 -1.3819 -3.6092 -1.9197 31 1 -0.5384 -5.7183 -0.9739 32 1 1.4888 -5.7370 0.4195 33 1 5.0007 -2.3772 0.4801 34 1 6.4696 -2.7903 -1.7781 35 1 5.2871 -7.7288 -2.3846 36 1 3.7319 -7.1081 -2.9915 37 1 4.8032 -6.1257 -4.9339 38 1 5.3771 -7.8056 -4.8079 39 1 7.3127 -6.4108 -5.2343 40 1 7.3905 -6.9184 -3.5288 41 1 7.8532 -4.5460 -3.5555 42 1 6.4660 -4.2259 -4.6291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285106043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:32 Heat of formation + Delta-G solvation = -5.985315 kcal Electronic energy + Delta-G solvation = -28956.319027 eV Core-core repulsion = 25028.299386 eV Total energy + Delta-G solvation = -3928.019641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.43839 -39.40885 -38.20978 -37.79324 -36.80506 -35.74322 -35.33280 -33.26502 -32.07116 -31.38275 -30.47357 -28.83110 -27.39398 -24.98146 -23.58697 -23.15693 -22.98305 -22.22784 -20.71612 -19.62683 -19.44358 -18.49884 -18.15984 -17.58444 -17.20416 -17.06030 -16.56922 -16.19440 -16.03817 -15.24823 -15.15836 -14.99713 -14.91399 -14.74369 -14.49189 -14.38551 -13.92015 -13.73288 -13.43620 -13.33994 -13.10684 -13.05379 -13.01856 -12.89839 -12.81664 -12.54542 -12.13773 -12.06128 -11.92335 -11.82915 -11.74782 -11.67375 -11.34004 -11.20386 -11.03342 -9.86462 -9.69987 -9.46188 -9.21995 -8.81902 -6.64906 -0.39785 0.51194 0.96148 0.98253 1.35988 1.44436 1.49734 1.52875 1.85736 2.15510 2.23477 2.60109 2.86423 3.41766 3.46791 3.66262 3.76991 3.87518 3.92438 3.99492 4.30125 4.38883 4.46647 4.50208 4.54798 4.67372 4.73837 4.83781 4.86368 4.93240 4.94558 5.06439 5.07001 5.13091 5.19504 5.26737 5.37046 5.48114 5.61084 5.68242 5.78776 5.97218 5.98918 6.04640 6.24405 6.43124 6.63779 6.79867 6.81723 8.14548 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.004404 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.212965 B = 6355.643564 C = 6763.766298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.245 1.245 5 H -0.253 1.253 6 H -0.265 1.265 7 C -0.476 4.476 8 H 0.088 0.912 9 C 0.161 3.839 10 C -0.187 4.187 11 C -0.073 4.073 12 C -0.254 4.254 13 C 0.001 3.999 14 C -0.779 4.779 15 S 2.710 3.290 16 O -0.991 6.991 17 O -0.985 6.985 18 N -1.012 6.012 19 C 0.300 3.700 20 C -0.301 4.301 21 C 0.108 3.892 22 N -0.367 5.367 23 N -0.355 5.355 24 C 0.121 3.879 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.057 4.057 28 H 0.297 0.703 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.439 0.561 34 H 0.172 0.828 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.273 -6.375 -13.024 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.168 1.168 5 H -0.177 1.177 6 H -0.190 1.190 7 C -0.504 4.504 8 H 0.106 0.894 9 C 0.156 3.844 10 C -0.207 4.207 11 C -0.091 4.091 12 C -0.274 4.274 13 C -0.019 4.019 14 C -0.875 4.875 15 S 2.809 3.191 16 O -0.981 6.981 17 O -0.976 6.976 18 N -0.765 5.765 19 C 0.043 3.957 20 C -0.333 4.333 21 C -0.021 4.021 22 N -0.151 5.151 23 N -0.185 5.185 24 C 0.001 3.999 25 C -0.165 4.165 26 C -0.159 4.159 27 C -0.095 4.095 28 H 0.108 0.892 29 H 0.135 0.865 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.129 0.871 33 H 0.277 0.723 34 H 0.190 0.810 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.185 -7.611 -11.781 18.579 hybrid contribution -0.119 1.771 0.031 1.775 sum 12.065 -5.840 -11.750 17.825 Atomic orbital electron populations 1.69820 1.09083 1.31508 1.32422 1.26867 0.95728 1.04913 0.90466 0.85201 0.80230 0.75415 0.79423 1.16774 1.17697 1.18991 1.20138 0.97268 0.91821 1.41192 0.89359 1.17358 0.91084 0.90389 0.85568 1.21539 0.99083 0.97526 1.02507 1.21232 0.97946 0.92807 0.97159 1.20832 1.00720 0.98026 1.07804 1.20405 0.93457 0.94957 0.93079 1.29854 1.25429 1.00882 1.31336 1.00771 0.73360 0.71858 0.73157 1.93447 1.85603 1.36515 1.82537 1.93517 1.86219 1.58787 1.59050 1.52756 1.49412 1.33563 1.40754 1.19073 0.96262 0.90461 0.89952 1.21030 1.08318 1.04766 0.99183 1.21661 0.93418 0.88826 0.98234 1.48565 1.29344 1.17282 1.19936 1.77483 1.23957 1.11962 1.05053 1.22172 1.03006 0.81134 0.93561 1.21986 0.97019 1.05060 0.92480 1.21706 0.95938 0.94170 1.04069 1.20717 0.98123 0.99273 0.91386 0.89194 0.86491 0.85765 0.85695 0.87078 0.72250 0.81029 0.89128 0.89962 0.90983 0.86134 0.87229 0.91158 0.86908 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.89 10.86 21.83 0.24 -40.66 16 2 C 0.04 1.90 5.23 85.26 0.45 2.35 16 3 Si 0.98 36.88 29.58 68.60 2.03 38.91 16 4 H -0.25 -8.74 7.11 99.48 0.71 -8.04 16 5 H -0.25 -8.76 7.11 99.48 0.71 -8.06 16 6 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.48 -25.31 7.67 23.46 0.18 -25.13 16 8 H 0.09 4.41 5.72 -2.91 -0.02 4.39 16 9 C 0.16 8.82 5.55 -21.29 -0.12 8.71 16 10 C -0.19 -9.82 8.67 22.73 0.20 -9.62 16 11 C -0.07 -3.40 10.02 22.22 0.22 -3.18 16 12 C -0.25 -11.66 10.05 22.46 0.23 -11.43 16 13 C 0.00 0.05 9.53 22.22 0.21 0.26 16 14 C -0.78 -41.17 5.89 22.73 0.13 -41.03 16 15 S 2.71 133.91 4.74 -56.49 -0.27 133.64 16 16 O -0.99 -51.37 16.12 -128.00 -2.06 -53.43 16 17 O -0.99 -52.71 16.52 -128.00 -2.12 -54.83 16 18 N -1.01 -41.79 5.06 -54.40 -0.28 -42.07 16 19 C 0.30 12.00 7.73 133.38 1.03 13.03 16 20 C -0.30 -9.32 10.78 22.03 0.24 -9.09 16 21 C 0.11 2.83 6.58 41.27 0.27 3.10 16 22 N -0.37 -11.47 4.04 -334.06 -1.35 -12.82 16 23 N -0.36 -14.88 11.61 -54.34 -0.63 -15.51 16 24 C 0.12 2.62 7.27 86.44 0.63 3.25 16 25 C -0.13 -1.56 5.93 30.72 0.18 -1.38 16 26 C -0.12 -1.19 5.97 30.79 0.18 -1.00 16 27 C -0.06 -0.79 6.29 30.06 0.19 -0.60 16 28 H 0.30 13.36 8.30 -92.71 -0.77 12.60 16 29 H 0.12 6.20 6.21 -2.91 -0.02 6.18 16 30 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 31 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 32 H 0.11 5.36 7.33 -2.91 -0.02 5.34 16 33 H 0.44 15.21 8.73 -96.74 -0.84 14.37 16 34 H 0.17 4.21 8.06 -2.91 -0.02 4.18 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 38 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.07 0.73 8.12 -2.38 -0.02 0.71 16 41 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -78.23 358.56 0.01 -78.21 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: 0.23 Total: 40.31 kcal Atomic # 6 Polarization: -75.98 SS G_CDS: 4.22 Total: -71.75 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -2.02 Total: -111.05 kcal Atomic # 8 Polarization: -104.08 SS G_CDS: -4.18 Total: -108.26 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Atomic # 16 Polarization: 133.91 SS G_CDS: -0.27 Total: 133.64 kcal Total: -78.23 0.01 -78.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285106043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.227 kcal (2) G-P(sol) polarization free energy of solvation -78.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds