Wall clock time and date at job start Wed Apr 1 2020 04:48:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13605 * 1
3 3 C 1.47195 * 179.97438 * 2 1
4 4 N 1.46494 * 109.47363 * 353.32222 * 3 2 1
5 5 C 1.37103 * 120.00127 * 263.95450 * 4 3 2
6 6 H 1.08001 * 119.99643 * 200.21676 * 5 4 3
7 7 C 1.38955 * 119.99727 * 20.21345 * 5 4 3
8 8 N 1.31412 * 119.99854 * 21.43087 * 7 5 4
9 9 Si 1.86802 * 119.99608 * 201.42324 * 7 5 4
10 10 H 1.48494 * 109.47152 * 60.00514 * 9 7 5
11 11 H 1.48497 * 109.46639 * 180.02562 * 9 7 5
12 12 H 1.48499 * 109.47100 * 300.00382 * 9 7 5
13 13 C 1.34779 * 120.00190 * 83.95599 * 4 3 2
14 14 O 1.21289 * 119.99971 * 180.02562 * 13 4 3
15 15 C 1.50698 * 119.99493 * 359.97438 * 13 4 3
16 16 C 1.53008 * 109.47104 * 180.02562 * 15 13 4
17 17 C 1.50690 * 109.47333 * 180.02562 * 16 15 13
18 18 O 1.21280 * 120.00128 * 0.02562 * 17 16 15
19 19 N 1.34778 * 120.00139 * 179.97438 * 17 16 15
20 20 C 1.47069 * 120.86936 * 179.97438 * 19 17 16
21 21 C 1.53194 * 108.56527 * 115.11833 * 20 19 17
22 22 C 1.51398 * 109.06706 * 45.54915 * 21 20 19
23 23 S 1.75901 * 125.05978 * 161.89744 * 22 21 20
24 24 C 1.75722 * 91.11480 * 179.68133 * 23 22 21
25 25 C 1.32927 * 109.58327 * 0.10192 * 24 23 22
26 26 C 1.34644 * 125.10192 * 341.81743 * 22 21 20
27 27 C 1.46971 * 120.86564 * 0.02562 * 19 17 16
28 28 H 1.09002 * 109.46630 * 233.32128 * 3 2 1
29 29 H 1.09004 * 109.47209 * 113.32636 * 3 2 1
30 30 H 0.96999 * 119.99509 * 179.97438 * 8 7 5
31 31 H 1.08998 * 109.47544 * 60.00497 * 15 13 4
32 32 H 1.08994 * 109.47526 * 300.00101 * 15 13 4
33 33 H 1.08998 * 109.46845 * 59.99664 * 16 15 13
34 34 H 1.09001 * 109.46728 * 300.00626 * 16 15 13
35 35 H 1.09002 * 109.61929 * 234.83682 * 20 19 17
36 36 H 1.08993 * 109.62089 * 355.21227 * 20 19 17
37 37 H 1.08995 * 109.53791 * 165.43374 * 21 20 19
38 38 H 1.09001 * 109.53516 * 285.59743 * 21 20 19
39 39 H 1.07996 * 125.20744 * 180.37485 * 24 23 22
40 40 H 1.08006 * 122.16846 * 180.02562 * 25 24 23
41 41 H 1.08996 * 109.80045 * 105.49687 * 27 19 17
42 42 H 1.08996 * 109.80093 * 344.62661 * 27 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 7 3.0970 -1.3709 0.1606
5 6 3.4436 -1.8340 1.4036
6 1 4.0933 -2.6915 1.4986
7 6 2.9591 -1.2000 2.5412
8 7 1.8760 -0.4591 2.4696
9 14 3.8472 -1.4009 4.1723
10 1 5.2375 -0.8952 4.0445
11 1 3.1341 -0.6301 5.2223
12 1 3.8755 -2.8377 4.5467
13 6 3.2061 -2.1776 -0.9136
14 8 3.6106 -3.3133 -0.7805
15 6 2.8246 -1.6687 -2.2798
16 6 3.0406 -2.7748 -3.3147
17 6 2.6597 -2.2658 -4.6809
18 8 2.2557 -1.1301 -4.8140
19 7 2.7689 -3.0724 -5.7552
20 6 2.4020 -2.5956 -7.0972
21 6 3.6629 -2.5689 -7.9669
22 6 4.4295 -3.8589 -7.7664
23 16 5.6655 -4.4792 -8.8534
24 6 5.9169 -5.8805 -7.8233
25 6 5.1024 -5.8146 -6.7749
26 6 4.2685 -4.7020 -6.7290
27 6 3.2568 -4.4518 -5.6159
28 1 2.9710 0.6147 0.8242
29 1 2.9712 0.4078 -0.9437
30 1 1.5376 -0.0169 3.2638
31 1 3.4436 -0.8080 -2.5329
32 1 1.7754 -1.3736 -2.2777
33 1 2.4213 -3.6353 -3.0614
34 1 4.0898 -3.0704 -3.3168
35 1 1.6680 -3.2706 -7.5374
36 1 1.9812 -1.5927 -7.0269
37 1 3.3806 -2.4716 -9.0151
38 1 4.2873 -1.7236 -7.6776
39 1 6.6277 -6.6716 -8.0109
40 1 5.0884 -6.5758 -6.0088
41 1 2.4243 -5.1491 -5.7097
42 1 3.7370 -4.5773 -4.6455
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000299721112.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:48:50
Heat of formation + Delta-G solvation = 3.509746 kcal
Electronic energy + Delta-G solvation = -27344.938854 eV
Core-core repulsion = 23417.330949 eV
Total energy + Delta-G solvation = -3927.607904 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.43288 -38.93880 -38.29338 -35.79900 -35.57270 -34.33117 -33.05871 -32.10614
-31.50366 -29.75092 -27.47669 -26.73006 -25.54685 -24.27492 -23.55748 -22.20640
-19.54582 -18.92365 -18.44522 -17.87233 -17.68539 -16.81638 -16.38927 -16.23536
-15.95950 -15.62304 -15.07289 -14.82480 -14.59214 -14.20921 -13.98008 -13.66450
-13.51044 -13.40187 -12.94503 -12.91733 -12.77545 -12.56604 -12.39900 -12.05383
-11.91252 -11.85410 -11.63008 -11.53619 -11.33325 -11.23621 -11.11608 -11.01596
-10.81030 -10.52721 -10.41851 -10.26917 -9.74777 -9.23582 -8.93017 -8.82722
-8.59823 -8.58604 -8.01684 -6.48821 -3.99998 0.70854 1.32330 1.70375
2.36955 2.66936 2.81297 3.12874 3.22595 3.24900 3.58535 3.83575
4.04273 4.13806 4.32037 4.43184 4.56634 4.69563 4.87718 4.91827
4.93776 4.98908 5.07133 5.18504 5.24230 5.27331 5.36270 5.39745
5.44669 5.56867 5.66351 5.72407 5.77384 5.92463 5.99954 6.14054
6.20228 6.24950 6.30368 6.38128 6.50603 7.25873 7.48050 7.91690
8.16097 8.28655 8.80885 9.00580 9.20788 9.74667 10.57332
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.018838 B = 0.002358 C = 0.002162
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1485.964462 B =11870.965483 C =12948.209140
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.472 5.472
2 C 0.246 3.754
3 C 0.221 3.779
4 N -0.442 5.442
5 C -0.317 4.317
6 H 0.107 0.893
7 C 0.033 3.967
8 N -0.874 5.874
9 Si 0.927 3.073
10 H -0.272 1.272
11 H -0.285 1.285
12 H -0.273 1.273
13 C 0.457 3.543
14 O -0.578 6.578
15 C -0.121 4.121
16 C -0.119 4.119
17 C 0.521 3.479
18 O -0.536 6.536
19 N -0.619 5.619
20 C 0.116 3.884
21 C -0.064 4.064
22 C -0.167 4.167
23 S 0.090 5.910
24 C -0.214 4.214
25 C -0.120 4.120
26 C -0.124 4.124
27 C 0.171 3.829
28 H 0.123 0.877
29 H 0.087 0.913
30 H 0.274 0.726
31 H 0.088 0.912
32 H 0.086 0.914
33 H 0.100 0.900
34 H 0.101 0.899
35 H 0.073 0.927
36 H 0.102 0.898
37 H 0.087 0.913
38 H 0.085 0.915
39 H 0.165 0.835
40 H 0.143 0.857
41 H 0.085 0.915
42 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.305 -5.666 -21.306 23.225
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.152 5.152
2 C -0.072 4.072
3 C 0.094 3.906
4 N -0.162 5.162
5 C -0.444 4.444
6 H 0.125 0.875
7 C -0.171 4.171
8 N -0.513 5.513
9 Si 0.753 3.247
10 H -0.197 1.197
11 H -0.211 1.211
12 H -0.198 1.198
13 C 0.246 3.754
14 O -0.461 6.461
15 C -0.162 4.162
16 C -0.159 4.159
17 C 0.311 3.689
18 O -0.413 6.413
19 N -0.353 5.353
20 C -0.008 4.008
21 C -0.104 4.104
22 C -0.285 4.285
23 S 0.356 5.644
24 C -0.349 4.349
25 C -0.151 4.151
26 C -0.137 4.137
27 C 0.046 3.954
28 H 0.141 0.859
29 H 0.105 0.895
30 H 0.084 0.916
31 H 0.107 0.893
32 H 0.104 0.896
33 H 0.118 0.882
34 H 0.119 0.881
35 H 0.091 0.909
36 H 0.121 0.879
37 H 0.105 0.895
38 H 0.104 0.896
39 H 0.183 0.817
40 H 0.161 0.839
41 H 0.103 0.897
42 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 6.175 -5.014 -22.520 23.884
hybrid contribution 0.220 -0.712 2.218 2.340
sum 6.395 -5.726 -20.302 22.042
Atomic orbital electron populations
1.80884 1.13613 1.08257 1.12415 1.29240 0.95338 0.92674 0.89982
1.18701 0.81720 0.87335 1.02874 1.43599 1.56456 1.08924 1.07185
1.19642 1.28100 1.16201 0.80427 0.87514 1.25301 0.94796 0.97203
0.99826 1.69850 1.17937 1.32313 1.31171 0.85980 0.79405 0.78685
0.80590 1.19704 1.21062 1.19835 1.20114 0.83695 0.85806 0.85834
1.90524 1.50672 1.18750 1.86185 1.21350 1.03629 0.98481 0.92699
1.21380 1.04385 1.00409 0.89699 1.20994 0.76556 0.85034 0.86322
1.90685 1.45943 1.18591 1.86039 1.48089 1.66353 1.13382 1.07495
1.21540 0.95275 1.02332 0.81645 1.20676 0.96197 0.92739 1.00801
1.24687 1.03149 1.01688 0.98937 1.84197 1.36273 1.17422 1.26496
1.25345 1.06655 1.03041 0.99858 1.19946 0.96667 0.98944 0.99520
1.19852 1.00609 0.95599 0.97627 1.20660 0.94836 0.82725 0.97224
0.85893 0.89532 0.91571 0.89330 0.89594 0.88187 0.88096 0.90868
0.87928 0.89477 0.89629 0.81716 0.83893 0.89717 0.87576
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.47 -11.52 18.54 42.15 0.78 -10.74 16
2 C 0.25 5.57 12.82 -20.76 -0.27 5.31 16
3 C 0.22 4.45 4.91 -6.83 -0.03 4.42 16
4 N -0.44 -10.24 2.60 -117.94 -0.31 -10.55 16
5 C -0.32 -8.07 9.27 -14.93 -0.14 -8.21 16
6 H 0.11 2.85 7.43 -52.49 -0.39 2.46 16
7 C 0.03 0.81 4.84 -17.47 -0.08 0.72 16
8 N -0.87 -22.22 9.58 55.50 0.53 -21.69 16
9 Si 0.93 19.53 29.60 -169.99 -5.03 14.50 16
10 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16
11 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16
12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16
13 C 0.46 10.07 7.56 -10.99 -0.08 9.98 16
14 O -0.58 -14.28 15.65 5.55 0.09 -14.20 16
15 C -0.12 -2.12 3.60 -27.88 -0.10 -2.22 16
16 C -0.12 -1.76 3.39 -27.88 -0.09 -1.86 16
17 C 0.52 7.48 7.71 -10.99 -0.08 7.39 16
18 O -0.54 -9.27 15.42 5.56 0.09 -9.18 16
19 N -0.62 -7.06 2.92 -173.06 -0.50 -7.57 16
20 C 0.12 1.12 6.40 -3.63 -0.02 1.10 16
21 C -0.06 -0.54 6.43 -27.44 -0.18 -0.72 16
22 C -0.17 -1.58 6.39 -35.24 -0.23 -1.80 16
23 S 0.09 0.75 23.31 -107.50 -2.51 -1.76 16
24 C -0.21 -1.68 11.20 28.90 0.32 -1.36 16
25 C -0.12 -1.02 10.00 -41.09 -0.41 -1.43 16
26 C -0.12 -1.18 5.86 -104.68 -0.61 -1.80 16
27 C 0.17 1.62 6.52 -4.05 -0.03 1.59 16
28 H 0.12 2.50 6.63 -51.93 -0.34 2.15 16
29 H 0.09 1.37 6.69 -51.93 -0.35 1.03 16
30 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16
31 H 0.09 1.41 7.37 -51.93 -0.38 1.03 16
32 H 0.09 1.60 7.45 -51.93 -0.39 1.21 16
33 H 0.10 1.47 8.05 -51.93 -0.42 1.05 16
34 H 0.10 1.42 7.53 -51.93 -0.39 1.03 16
35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
36 H 0.10 1.09 7.02 -51.93 -0.36 0.72 16
37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16
38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16
39 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16
40 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16
41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
42 H 0.11 0.99 6.16 -51.93 -0.32 0.67 16
LS Contribution 367.16 15.07 5.53 5.53
Total: -1.00 -32.64 367.16 -8.38 -41.03
By element:
Atomic # 1 Polarization: 8.54 SS G_CDS: -5.02 Total: 3.52 kcal
Atomic # 6 Polarization: 13.14 SS G_CDS: -2.04 Total: 11.10 kcal
Atomic # 7 Polarization: -51.05 SS G_CDS: 0.50 Total: -50.55 kcal
Atomic # 8 Polarization: -23.55 SS G_CDS: 0.17 Total: -23.38 kcal
Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal
Atomic # 16 Polarization: 0.75 SS G_CDS: -2.51 Total: -1.76 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -32.64 -8.38 -41.03 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299721112.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.536 kcal
(2) G-P(sol) polarization free energy of solvation -32.642 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.894 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.510 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds