Wall clock time and date at job start Wed Apr 1 2020 04:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47363 * 353.32222 * 3 2 1 5 5 C 1.37103 * 120.00127 * 263.95450 * 4 3 2 6 6 H 1.08001 * 119.99643 * 200.21676 * 5 4 3 7 7 C 1.38955 * 119.99727 * 20.21345 * 5 4 3 8 8 N 1.31412 * 119.99854 * 21.43087 * 7 5 4 9 9 Si 1.86802 * 119.99608 * 201.42324 * 7 5 4 10 10 H 1.48494 * 109.47152 * 60.00514 * 9 7 5 11 11 H 1.48497 * 109.46639 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47100 * 300.00382 * 9 7 5 13 13 C 1.34779 * 120.00190 * 83.95599 * 4 3 2 14 14 O 1.21289 * 119.99971 * 180.02562 * 13 4 3 15 15 C 1.50698 * 119.99493 * 359.97438 * 13 4 3 16 16 C 1.53008 * 109.47104 * 180.02562 * 15 13 4 17 17 C 1.50690 * 109.47333 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00128 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00139 * 179.97438 * 17 16 15 20 20 C 1.47069 * 120.86936 * 179.97438 * 19 17 16 21 21 C 1.53194 * 108.56527 * 115.11833 * 20 19 17 22 22 C 1.51398 * 109.06706 * 45.54915 * 21 20 19 23 23 S 1.75901 * 125.05978 * 161.89744 * 22 21 20 24 24 C 1.75722 * 91.11480 * 179.68133 * 23 22 21 25 25 C 1.32927 * 109.58327 * 0.10192 * 24 23 22 26 26 C 1.34644 * 125.10192 * 341.81743 * 22 21 20 27 27 C 1.46971 * 120.86564 * 0.02562 * 19 17 16 28 28 H 1.09002 * 109.46630 * 233.32128 * 3 2 1 29 29 H 1.09004 * 109.47209 * 113.32636 * 3 2 1 30 30 H 0.96999 * 119.99509 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47544 * 60.00497 * 15 13 4 32 32 H 1.08994 * 109.47526 * 300.00101 * 15 13 4 33 33 H 1.08998 * 109.46845 * 59.99664 * 16 15 13 34 34 H 1.09001 * 109.46728 * 300.00626 * 16 15 13 35 35 H 1.09002 * 109.61929 * 234.83682 * 20 19 17 36 36 H 1.08993 * 109.62089 * 355.21227 * 20 19 17 37 37 H 1.08995 * 109.53791 * 165.43374 * 21 20 19 38 38 H 1.09001 * 109.53516 * 285.59743 * 21 20 19 39 39 H 1.07996 * 125.20744 * 180.37485 * 24 23 22 40 40 H 1.08006 * 122.16846 * 180.02562 * 25 24 23 41 41 H 1.08996 * 109.80045 * 105.49687 * 27 19 17 42 42 H 1.08996 * 109.80093 * 344.62661 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3709 0.1606 5 6 3.4436 -1.8340 1.4036 6 1 4.0933 -2.6915 1.4986 7 6 2.9591 -1.2000 2.5412 8 7 1.8760 -0.4591 2.4696 9 14 3.8472 -1.4009 4.1723 10 1 5.2375 -0.8952 4.0445 11 1 3.1341 -0.6301 5.2223 12 1 3.8755 -2.8377 4.5467 13 6 3.2061 -2.1776 -0.9136 14 8 3.6106 -3.3133 -0.7805 15 6 2.8246 -1.6687 -2.2798 16 6 3.0406 -2.7748 -3.3147 17 6 2.6597 -2.2658 -4.6809 18 8 2.2557 -1.1301 -4.8140 19 7 2.7689 -3.0724 -5.7552 20 6 2.4020 -2.5956 -7.0972 21 6 3.6629 -2.5689 -7.9669 22 6 4.4295 -3.8589 -7.7664 23 16 5.6655 -4.4792 -8.8534 24 6 5.9169 -5.8805 -7.8233 25 6 5.1024 -5.8146 -6.7749 26 6 4.2685 -4.7020 -6.7290 27 6 3.2568 -4.4518 -5.6159 28 1 2.9710 0.6147 0.8242 29 1 2.9712 0.4078 -0.9437 30 1 1.5376 -0.0169 3.2638 31 1 3.4436 -0.8080 -2.5329 32 1 1.7754 -1.3736 -2.2777 33 1 2.4213 -3.6353 -3.0614 34 1 4.0898 -3.0704 -3.3168 35 1 1.6680 -3.2706 -7.5374 36 1 1.9812 -1.5927 -7.0269 37 1 3.3806 -2.4716 -9.0151 38 1 4.2873 -1.7236 -7.6776 39 1 6.6277 -6.6716 -8.0109 40 1 5.0884 -6.5758 -6.0088 41 1 2.4243 -5.1491 -5.7097 42 1 3.7370 -4.5773 -4.6455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299721112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:50 Heat of formation + Delta-G solvation = 3.509746 kcal Electronic energy + Delta-G solvation = -27344.938854 eV Core-core repulsion = 23417.330949 eV Total energy + Delta-G solvation = -3927.607904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43288 -38.93880 -38.29338 -35.79900 -35.57270 -34.33117 -33.05871 -32.10614 -31.50366 -29.75092 -27.47669 -26.73006 -25.54685 -24.27492 -23.55748 -22.20640 -19.54582 -18.92365 -18.44522 -17.87233 -17.68539 -16.81638 -16.38927 -16.23536 -15.95950 -15.62304 -15.07289 -14.82480 -14.59214 -14.20921 -13.98008 -13.66450 -13.51044 -13.40187 -12.94503 -12.91733 -12.77545 -12.56604 -12.39900 -12.05383 -11.91252 -11.85410 -11.63008 -11.53619 -11.33325 -11.23621 -11.11608 -11.01596 -10.81030 -10.52721 -10.41851 -10.26917 -9.74777 -9.23582 -8.93017 -8.82722 -8.59823 -8.58604 -8.01684 -6.48821 -3.99998 0.70854 1.32330 1.70375 2.36955 2.66936 2.81297 3.12874 3.22595 3.24900 3.58535 3.83575 4.04273 4.13806 4.32037 4.43184 4.56634 4.69563 4.87718 4.91827 4.93776 4.98908 5.07133 5.18504 5.24230 5.27331 5.36270 5.39745 5.44669 5.56867 5.66351 5.72407 5.77384 5.92463 5.99954 6.14054 6.20228 6.24950 6.30368 6.38128 6.50603 7.25873 7.48050 7.91690 8.16097 8.28655 8.80885 9.00580 9.20788 9.74667 10.57332 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002358 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.964462 B =11870.965483 C =12948.209140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.246 3.754 3 C 0.221 3.779 4 N -0.442 5.442 5 C -0.317 4.317 6 H 0.107 0.893 7 C 0.033 3.967 8 N -0.874 5.874 9 Si 0.927 3.073 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.457 3.543 14 O -0.578 6.578 15 C -0.121 4.121 16 C -0.119 4.119 17 C 0.521 3.479 18 O -0.536 6.536 19 N -0.619 5.619 20 C 0.116 3.884 21 C -0.064 4.064 22 C -0.167 4.167 23 S 0.090 5.910 24 C -0.214 4.214 25 C -0.120 4.120 26 C -0.124 4.124 27 C 0.171 3.829 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.274 0.726 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.165 0.835 40 H 0.143 0.857 41 H 0.085 0.915 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.305 -5.666 -21.306 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.072 4.072 3 C 0.094 3.906 4 N -0.162 5.162 5 C -0.444 4.444 6 H 0.125 0.875 7 C -0.171 4.171 8 N -0.513 5.513 9 Si 0.753 3.247 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.246 3.754 14 O -0.461 6.461 15 C -0.162 4.162 16 C -0.159 4.159 17 C 0.311 3.689 18 O -0.413 6.413 19 N -0.353 5.353 20 C -0.008 4.008 21 C -0.104 4.104 22 C -0.285 4.285 23 S 0.356 5.644 24 C -0.349 4.349 25 C -0.151 4.151 26 C -0.137 4.137 27 C 0.046 3.954 28 H 0.141 0.859 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.183 0.817 40 H 0.161 0.839 41 H 0.103 0.897 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.175 -5.014 -22.520 23.884 hybrid contribution 0.220 -0.712 2.218 2.340 sum 6.395 -5.726 -20.302 22.042 Atomic orbital electron populations 1.80884 1.13613 1.08257 1.12415 1.29240 0.95338 0.92674 0.89982 1.18701 0.81720 0.87335 1.02874 1.43599 1.56456 1.08924 1.07185 1.19642 1.28100 1.16201 0.80427 0.87514 1.25301 0.94796 0.97203 0.99826 1.69850 1.17937 1.32313 1.31171 0.85980 0.79405 0.78685 0.80590 1.19704 1.21062 1.19835 1.20114 0.83695 0.85806 0.85834 1.90524 1.50672 1.18750 1.86185 1.21350 1.03629 0.98481 0.92699 1.21380 1.04385 1.00409 0.89699 1.20994 0.76556 0.85034 0.86322 1.90685 1.45943 1.18591 1.86039 1.48089 1.66353 1.13382 1.07495 1.21540 0.95275 1.02332 0.81645 1.20676 0.96197 0.92739 1.00801 1.24687 1.03149 1.01688 0.98937 1.84197 1.36273 1.17422 1.26496 1.25345 1.06655 1.03041 0.99858 1.19946 0.96667 0.98944 0.99520 1.19852 1.00609 0.95599 0.97627 1.20660 0.94836 0.82725 0.97224 0.85893 0.89532 0.91571 0.89330 0.89594 0.88187 0.88096 0.90868 0.87928 0.89477 0.89629 0.81716 0.83893 0.89717 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.52 18.54 42.15 0.78 -10.74 16 2 C 0.25 5.57 12.82 -20.76 -0.27 5.31 16 3 C 0.22 4.45 4.91 -6.83 -0.03 4.42 16 4 N -0.44 -10.24 2.60 -117.94 -0.31 -10.55 16 5 C -0.32 -8.07 9.27 -14.93 -0.14 -8.21 16 6 H 0.11 2.85 7.43 -52.49 -0.39 2.46 16 7 C 0.03 0.81 4.84 -17.47 -0.08 0.72 16 8 N -0.87 -22.22 9.58 55.50 0.53 -21.69 16 9 Si 0.93 19.53 29.60 -169.99 -5.03 14.50 16 10 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.46 10.07 7.56 -10.99 -0.08 9.98 16 14 O -0.58 -14.28 15.65 5.55 0.09 -14.20 16 15 C -0.12 -2.12 3.60 -27.88 -0.10 -2.22 16 16 C -0.12 -1.76 3.39 -27.88 -0.09 -1.86 16 17 C 0.52 7.48 7.71 -10.99 -0.08 7.39 16 18 O -0.54 -9.27 15.42 5.56 0.09 -9.18 16 19 N -0.62 -7.06 2.92 -173.06 -0.50 -7.57 16 20 C 0.12 1.12 6.40 -3.63 -0.02 1.10 16 21 C -0.06 -0.54 6.43 -27.44 -0.18 -0.72 16 22 C -0.17 -1.58 6.39 -35.24 -0.23 -1.80 16 23 S 0.09 0.75 23.31 -107.50 -2.51 -1.76 16 24 C -0.21 -1.68 11.20 28.90 0.32 -1.36 16 25 C -0.12 -1.02 10.00 -41.09 -0.41 -1.43 16 26 C -0.12 -1.18 5.86 -104.68 -0.61 -1.80 16 27 C 0.17 1.62 6.52 -4.05 -0.03 1.59 16 28 H 0.12 2.50 6.63 -51.93 -0.34 2.15 16 29 H 0.09 1.37 6.69 -51.93 -0.35 1.03 16 30 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.09 1.41 7.37 -51.93 -0.38 1.03 16 32 H 0.09 1.60 7.45 -51.93 -0.39 1.21 16 33 H 0.10 1.47 8.05 -51.93 -0.42 1.05 16 34 H 0.10 1.42 7.53 -51.93 -0.39 1.03 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 1.09 7.02 -51.93 -0.36 0.72 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 0.99 6.16 -51.93 -0.32 0.67 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -32.64 367.16 -8.38 -41.03 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.02 Total: 3.52 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -2.04 Total: 11.10 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.50 Total: -50.55 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.17 Total: -23.38 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.51 Total: -1.76 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.64 -8.38 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299721112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.536 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds