Wall clock time and date at job start Wed Apr 1 2020 04:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47363 * 353.32222 * 3 2 1 5 5 C 1.37103 * 120.00127 * 263.95450 * 4 3 2 6 6 H 1.08001 * 119.99643 * 200.21676 * 5 4 3 7 7 C 1.38955 * 119.99727 * 20.21345 * 5 4 3 8 8 N 1.31412 * 119.99854 * 21.43087 * 7 5 4 9 9 Si 1.86802 * 119.99608 * 201.42324 * 7 5 4 10 10 H 1.48494 * 109.47152 * 60.00514 * 9 7 5 11 11 H 1.48497 * 109.46639 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47100 * 300.00382 * 9 7 5 13 13 C 1.34779 * 120.00190 * 83.95599 * 4 3 2 14 14 O 1.21289 * 119.99971 * 180.02562 * 13 4 3 15 15 C 1.50698 * 119.99493 * 359.97438 * 13 4 3 16 16 C 1.53008 * 109.47104 * 180.02562 * 15 13 4 17 17 C 1.50690 * 109.47333 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00128 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00139 * 179.97438 * 17 16 15 20 20 C 1.47069 * 120.86936 * 179.97438 * 19 17 16 21 21 C 1.53194 * 108.56527 * 115.11833 * 20 19 17 22 22 C 1.51398 * 109.06706 * 45.54915 * 21 20 19 23 23 S 1.75901 * 125.05978 * 161.89744 * 22 21 20 24 24 C 1.75722 * 91.11480 * 179.68133 * 23 22 21 25 25 C 1.32927 * 109.58327 * 0.10192 * 24 23 22 26 26 C 1.34644 * 125.10192 * 341.81743 * 22 21 20 27 27 C 1.46971 * 120.86564 * 0.02562 * 19 17 16 28 28 H 1.09002 * 109.46630 * 233.32128 * 3 2 1 29 29 H 1.09004 * 109.47209 * 113.32636 * 3 2 1 30 30 H 0.96999 * 119.99509 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47544 * 60.00497 * 15 13 4 32 32 H 1.08994 * 109.47526 * 300.00101 * 15 13 4 33 33 H 1.08998 * 109.46845 * 59.99664 * 16 15 13 34 34 H 1.09001 * 109.46728 * 300.00626 * 16 15 13 35 35 H 1.09002 * 109.61929 * 234.83682 * 20 19 17 36 36 H 1.08993 * 109.62089 * 355.21227 * 20 19 17 37 37 H 1.08995 * 109.53791 * 165.43374 * 21 20 19 38 38 H 1.09001 * 109.53516 * 285.59743 * 21 20 19 39 39 H 1.07996 * 125.20744 * 180.37485 * 24 23 22 40 40 H 1.08006 * 122.16846 * 180.02562 * 25 24 23 41 41 H 1.08996 * 109.80045 * 105.49687 * 27 19 17 42 42 H 1.08996 * 109.80093 * 344.62661 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3709 0.1606 5 6 3.4436 -1.8340 1.4036 6 1 4.0933 -2.6915 1.4986 7 6 2.9591 -1.2000 2.5412 8 7 1.8760 -0.4591 2.4696 9 14 3.8472 -1.4009 4.1723 10 1 5.2375 -0.8952 4.0445 11 1 3.1341 -0.6301 5.2223 12 1 3.8755 -2.8377 4.5467 13 6 3.2061 -2.1776 -0.9136 14 8 3.6106 -3.3133 -0.7805 15 6 2.8246 -1.6687 -2.2798 16 6 3.0406 -2.7748 -3.3147 17 6 2.6597 -2.2658 -4.6809 18 8 2.2557 -1.1301 -4.8140 19 7 2.7689 -3.0724 -5.7552 20 6 2.4020 -2.5956 -7.0972 21 6 3.6629 -2.5689 -7.9669 22 6 4.4295 -3.8589 -7.7664 23 16 5.6655 -4.4792 -8.8534 24 6 5.9169 -5.8805 -7.8233 25 6 5.1024 -5.8146 -6.7749 26 6 4.2685 -4.7020 -6.7290 27 6 3.2568 -4.4518 -5.6159 28 1 2.9710 0.6147 0.8242 29 1 2.9712 0.4078 -0.9437 30 1 1.5376 -0.0169 3.2638 31 1 3.4436 -0.8080 -2.5329 32 1 1.7754 -1.3736 -2.2777 33 1 2.4213 -3.6353 -3.0614 34 1 4.0898 -3.0704 -3.3168 35 1 1.6680 -3.2706 -7.5374 36 1 1.9812 -1.5927 -7.0269 37 1 3.3806 -2.4716 -9.0151 38 1 4.2873 -1.7236 -7.6776 39 1 6.6277 -6.6716 -8.0109 40 1 5.0884 -6.5758 -6.0088 41 1 2.4243 -5.1491 -5.7097 42 1 3.7370 -4.5773 -4.6455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299721112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:49 Heat of formation + Delta-G solvation = -14.917209 kcal Electronic energy + Delta-G solvation = -27345.737906 eV Core-core repulsion = 23417.330949 eV Total energy + Delta-G solvation = -3928.406957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44321 -40.52990 -39.26205 -37.59606 -36.42861 -36.16852 -34.23250 -33.69846 -32.79181 -30.46826 -29.20039 -28.00198 -26.73814 -25.49582 -24.50254 -23.06667 -20.84802 -20.20453 -19.70627 -19.17292 -18.78935 -18.10524 -17.89845 -17.20041 -17.10493 -16.85555 -16.31901 -15.94251 -15.84665 -15.74995 -15.16705 -14.81002 -14.68454 -14.37307 -14.24389 -14.18164 -13.96888 -13.71503 -13.54940 -13.43784 -13.34614 -13.10174 -12.93612 -12.77547 -12.73252 -12.47424 -12.32252 -12.26168 -12.13050 -12.11240 -11.96394 -11.67816 -11.08230 -10.89948 -10.40527 -9.88993 -9.81670 -9.48218 -9.24511 -8.37793 -5.95314 0.06158 0.68789 1.07509 1.42991 1.50287 1.56150 1.59302 1.71642 1.80851 1.90680 2.08784 2.27016 2.37885 3.02487 3.10255 3.50864 3.60948 3.72525 3.76664 3.93383 4.02491 4.08775 4.19179 4.24646 4.33936 4.43400 4.50150 4.54052 4.62109 4.75732 4.76862 4.82496 4.85875 4.93372 4.98204 4.99983 5.13412 5.32968 5.45046 5.50960 5.55709 6.06168 6.28176 6.41056 7.01921 7.08058 7.13654 7.37346 7.93515 8.66151 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002358 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.964462 B =11870.965483 C =12948.209140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.257 3.743 3 C 0.223 3.777 4 N -0.456 5.456 5 C -0.341 4.341 6 H 0.087 0.913 7 C 0.004 3.996 8 N -0.894 5.894 9 Si 0.988 3.012 10 H -0.259 1.259 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.454 3.546 14 O -0.609 6.609 15 C -0.110 4.110 16 C -0.113 4.113 17 C 0.524 3.476 18 O -0.571 6.571 19 N -0.613 5.613 20 C 0.113 3.887 21 C -0.059 4.059 22 C -0.185 4.185 23 S 0.098 5.902 24 C -0.213 4.213 25 C -0.133 4.133 26 C -0.133 4.133 27 C 0.167 3.833 28 H 0.123 0.877 29 H 0.134 0.866 30 H 0.273 0.727 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.187 0.813 40 H 0.157 0.843 41 H 0.102 0.898 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.374 -6.050 -22.439 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.060 4.060 3 C 0.096 3.904 4 N -0.175 5.175 5 C -0.469 4.469 6 H 0.104 0.896 7 C -0.198 4.198 8 N -0.532 5.532 9 Si 0.812 3.188 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.206 1.206 13 C 0.244 3.756 14 O -0.494 6.494 15 C -0.150 4.150 16 C -0.153 4.153 17 C 0.314 3.686 18 O -0.450 6.450 19 N -0.345 5.345 20 C -0.010 4.010 21 C -0.099 4.099 22 C -0.303 4.303 23 S 0.364 5.636 24 C -0.348 4.348 25 C -0.163 4.163 26 C -0.146 4.146 27 C 0.043 3.957 28 H 0.140 0.860 29 H 0.151 0.849 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.204 0.796 40 H 0.175 0.825 41 H 0.120 0.880 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.254 -5.412 -23.692 25.362 hybrid contribution -0.088 -0.685 2.499 2.593 sum 7.165 -6.097 -21.193 23.187 Atomic orbital electron populations 1.80879 1.14799 1.09383 1.13823 1.29752 0.95865 0.91590 0.88807 1.19004 0.80125 0.86012 1.05286 1.43781 1.56662 1.10229 1.06862 1.19609 1.28736 1.16492 0.82018 0.89553 1.25947 0.94976 0.96625 1.02292 1.69938 1.18623 1.32827 1.31816 0.85071 0.78887 0.77974 0.76880 1.18392 1.20811 1.20644 1.20856 0.82282 0.85319 0.87106 1.90496 1.51784 1.20181 1.86964 1.21256 1.03218 0.99983 0.90566 1.21295 1.05003 0.99415 0.89557 1.20772 0.76430 0.84767 0.86663 1.90671 1.47861 1.19966 1.86517 1.48110 1.65117 1.13798 1.07516 1.21686 0.96320 1.02132 0.80873 1.20636 0.95327 0.92165 1.01728 1.24865 1.03895 1.02073 0.99465 1.84162 1.35688 1.17544 1.26201 1.25683 1.06595 1.03209 0.99322 1.20129 0.96752 0.99151 1.00285 1.19954 1.00909 0.96211 0.97559 1.20820 0.95606 0.81788 0.97486 0.85963 0.84862 0.91670 0.87253 0.90433 0.88184 0.87229 0.89102 0.89044 0.87356 0.90524 0.79605 0.82511 0.88046 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.83 18.54 20.00 0.37 -24.46 16 2 C 0.26 11.56 12.82 89.44 1.15 12.70 16 3 C 0.22 8.72 4.91 84.57 0.42 9.13 16 4 N -0.46 -21.00 2.60 -645.42 -1.68 -22.68 16 5 C -0.34 -17.50 9.27 84.04 0.78 -16.72 16 6 H 0.09 4.71 7.43 -2.91 -0.02 4.68 16 7 C 0.00 0.19 4.84 84.93 0.41 0.60 16 8 N -0.89 -45.20 9.58 21.66 0.21 -44.99 16 9 Si 0.99 39.79 29.60 68.60 2.03 41.83 16 10 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 11 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 12 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 13 C 0.45 19.89 7.56 87.66 0.66 20.55 16 14 O -0.61 -30.26 15.65 -3.06 -0.05 -30.31 16 15 C -0.11 -3.75 3.60 29.85 0.11 -3.64 16 16 C -0.11 -3.25 3.39 29.85 0.10 -3.15 16 17 C 0.52 14.58 7.71 87.65 0.68 15.25 16 18 O -0.57 -19.38 15.42 -3.03 -0.05 -19.43 16 19 N -0.61 -13.24 2.92 -819.81 -2.39 -15.63 16 20 C 0.11 2.04 6.40 86.34 0.55 2.59 16 21 C -0.06 -0.91 6.43 30.14 0.19 -0.72 16 22 C -0.19 -3.19 6.39 25.08 0.16 -3.03 16 23 S 0.10 1.45 23.31 -56.49 -1.32 0.13 16 24 C -0.21 -2.89 11.20 66.65 0.75 -2.14 16 25 C -0.13 -2.00 10.00 21.31 0.21 -1.79 16 26 C -0.13 -2.31 5.86 -19.90 -0.12 -2.43 16 27 C 0.17 2.91 6.52 86.12 0.56 3.47 16 28 H 0.12 4.85 6.63 -2.39 -0.02 4.84 16 29 H 0.13 3.92 6.69 -2.39 -0.02 3.91 16 30 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 31 H 0.11 3.28 7.37 -2.39 -0.02 3.26 16 32 H 0.08 2.83 7.45 -2.39 -0.02 2.81 16 33 H 0.10 2.88 8.05 -2.39 -0.02 2.86 16 34 H 0.11 2.96 7.53 -2.39 -0.02 2.95 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.88 7.02 -2.39 -0.02 1.86 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 41 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.11 1.84 6.16 -2.39 -0.01 1.83 16 Total: -1.00 -70.04 367.16 4.81 -65.23 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 1.07 Total: 19.63 kcal Atomic # 6 Polarization: 24.07 SS G_CDS: 6.61 Total: 30.68 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -3.49 Total: -107.76 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -0.09 Total: -49.74 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -1.32 Total: 0.13 kcal Total: -70.04 4.81 -65.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299721112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.314 kcal (2) G-P(sol) polarization free energy of solvation -70.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds