Wall clock time and date at job start Wed Apr 1 2020 04:48:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13605 * 1
3 3 C 1.47195 * 179.97438 * 2 1
4 4 N 1.46494 * 109.47363 * 353.32222 * 3 2 1
5 5 C 1.37103 * 120.00127 * 263.95450 * 4 3 2
6 6 H 1.08001 * 119.99643 * 200.21676 * 5 4 3
7 7 C 1.38955 * 119.99727 * 20.21345 * 5 4 3
8 8 N 1.31412 * 119.99854 * 21.43087 * 7 5 4
9 9 Si 1.86802 * 119.99608 * 201.42324 * 7 5 4
10 10 H 1.48494 * 109.47152 * 60.00514 * 9 7 5
11 11 H 1.48497 * 109.46639 * 180.02562 * 9 7 5
12 12 H 1.48499 * 109.47100 * 300.00382 * 9 7 5
13 13 C 1.34779 * 120.00190 * 83.95599 * 4 3 2
14 14 O 1.21289 * 119.99971 * 180.02562 * 13 4 3
15 15 C 1.50698 * 119.99493 * 359.97438 * 13 4 3
16 16 C 1.53008 * 109.47104 * 180.02562 * 15 13 4
17 17 C 1.50690 * 109.47333 * 180.02562 * 16 15 13
18 18 O 1.21280 * 120.00128 * 0.02562 * 17 16 15
19 19 N 1.34778 * 120.00139 * 179.97438 * 17 16 15
20 20 C 1.47069 * 120.86936 * 179.97438 * 19 17 16
21 21 C 1.53194 * 108.56527 * 115.11833 * 20 19 17
22 22 C 1.51398 * 109.06706 * 45.54915 * 21 20 19
23 23 S 1.75901 * 125.05978 * 161.89744 * 22 21 20
24 24 C 1.75722 * 91.11480 * 179.68133 * 23 22 21
25 25 C 1.32927 * 109.58327 * 0.10192 * 24 23 22
26 26 C 1.34644 * 125.10192 * 341.81743 * 22 21 20
27 27 C 1.46971 * 120.86564 * 0.02562 * 19 17 16
28 28 H 1.09002 * 109.46630 * 233.32128 * 3 2 1
29 29 H 1.09004 * 109.47209 * 113.32636 * 3 2 1
30 30 H 0.96999 * 119.99509 * 179.97438 * 8 7 5
31 31 H 1.08998 * 109.47544 * 60.00497 * 15 13 4
32 32 H 1.08994 * 109.47526 * 300.00101 * 15 13 4
33 33 H 1.08998 * 109.46845 * 59.99664 * 16 15 13
34 34 H 1.09001 * 109.46728 * 300.00626 * 16 15 13
35 35 H 1.09002 * 109.61929 * 234.83682 * 20 19 17
36 36 H 1.08993 * 109.62089 * 355.21227 * 20 19 17
37 37 H 1.08995 * 109.53791 * 165.43374 * 21 20 19
38 38 H 1.09001 * 109.53516 * 285.59743 * 21 20 19
39 39 H 1.07996 * 125.20744 * 180.37485 * 24 23 22
40 40 H 1.08006 * 122.16846 * 180.02562 * 25 24 23
41 41 H 1.08996 * 109.80045 * 105.49687 * 27 19 17
42 42 H 1.08996 * 109.80093 * 344.62661 * 27 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 7 3.0970 -1.3709 0.1606
5 6 3.4436 -1.8340 1.4036
6 1 4.0933 -2.6915 1.4986
7 6 2.9591 -1.2000 2.5412
8 7 1.8760 -0.4591 2.4696
9 14 3.8472 -1.4009 4.1723
10 1 5.2375 -0.8952 4.0445
11 1 3.1341 -0.6301 5.2223
12 1 3.8755 -2.8377 4.5467
13 6 3.2061 -2.1776 -0.9136
14 8 3.6106 -3.3133 -0.7805
15 6 2.8246 -1.6687 -2.2798
16 6 3.0406 -2.7748 -3.3147
17 6 2.6597 -2.2658 -4.6809
18 8 2.2557 -1.1301 -4.8140
19 7 2.7689 -3.0724 -5.7552
20 6 2.4020 -2.5956 -7.0972
21 6 3.6629 -2.5689 -7.9669
22 6 4.4295 -3.8589 -7.7664
23 16 5.6655 -4.4792 -8.8534
24 6 5.9169 -5.8805 -7.8233
25 6 5.1024 -5.8146 -6.7749
26 6 4.2685 -4.7020 -6.7290
27 6 3.2568 -4.4518 -5.6159
28 1 2.9710 0.6147 0.8242
29 1 2.9712 0.4078 -0.9437
30 1 1.5376 -0.0169 3.2638
31 1 3.4436 -0.8080 -2.5329
32 1 1.7754 -1.3736 -2.2777
33 1 2.4213 -3.6353 -3.0614
34 1 4.0898 -3.0704 -3.3168
35 1 1.6680 -3.2706 -7.5374
36 1 1.9812 -1.5927 -7.0269
37 1 3.3806 -2.4716 -9.0151
38 1 4.2873 -1.7236 -7.6776
39 1 6.6277 -6.6716 -8.0109
40 1 5.0884 -6.5758 -6.0088
41 1 2.4243 -5.1491 -5.7097
42 1 3.7370 -4.5773 -4.6455
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000299721112.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:48:49
Heat of formation + Delta-G solvation = -14.917209 kcal
Electronic energy + Delta-G solvation = -27345.737906 eV
Core-core repulsion = 23417.330949 eV
Total energy + Delta-G solvation = -3928.406957 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.44321 -40.52990 -39.26205 -37.59606 -36.42861 -36.16852 -34.23250 -33.69846
-32.79181 -30.46826 -29.20039 -28.00198 -26.73814 -25.49582 -24.50254 -23.06667
-20.84802 -20.20453 -19.70627 -19.17292 -18.78935 -18.10524 -17.89845 -17.20041
-17.10493 -16.85555 -16.31901 -15.94251 -15.84665 -15.74995 -15.16705 -14.81002
-14.68454 -14.37307 -14.24389 -14.18164 -13.96888 -13.71503 -13.54940 -13.43784
-13.34614 -13.10174 -12.93612 -12.77547 -12.73252 -12.47424 -12.32252 -12.26168
-12.13050 -12.11240 -11.96394 -11.67816 -11.08230 -10.89948 -10.40527 -9.88993
-9.81670 -9.48218 -9.24511 -8.37793 -5.95314 0.06158 0.68789 1.07509
1.42991 1.50287 1.56150 1.59302 1.71642 1.80851 1.90680 2.08784
2.27016 2.37885 3.02487 3.10255 3.50864 3.60948 3.72525 3.76664
3.93383 4.02491 4.08775 4.19179 4.24646 4.33936 4.43400 4.50150
4.54052 4.62109 4.75732 4.76862 4.82496 4.85875 4.93372 4.98204
4.99983 5.13412 5.32968 5.45046 5.50960 5.55709 6.06168 6.28176
6.41056 7.01921 7.08058 7.13654 7.37346 7.93515 8.66151
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.018838 B = 0.002358 C = 0.002162
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1485.964462 B =11870.965483 C =12948.209140
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.508 5.508
2 C 0.257 3.743
3 C 0.223 3.777
4 N -0.456 5.456
5 C -0.341 4.341
6 H 0.087 0.913
7 C 0.004 3.996
8 N -0.894 5.894
9 Si 0.988 3.012
10 H -0.259 1.259
11 H -0.283 1.283
12 H -0.281 1.281
13 C 0.454 3.546
14 O -0.609 6.609
15 C -0.110 4.110
16 C -0.113 4.113
17 C 0.524 3.476
18 O -0.571 6.571
19 N -0.613 5.613
20 C 0.113 3.887
21 C -0.059 4.059
22 C -0.185 4.185
23 S 0.098 5.902
24 C -0.213 4.213
25 C -0.133 4.133
26 C -0.133 4.133
27 C 0.167 3.833
28 H 0.123 0.877
29 H 0.134 0.866
30 H 0.273 0.727
31 H 0.109 0.891
32 H 0.077 0.923
33 H 0.100 0.900
34 H 0.110 0.890
35 H 0.091 0.909
36 H 0.091 0.909
37 H 0.108 0.892
38 H 0.076 0.924
39 H 0.187 0.813
40 H 0.157 0.843
41 H 0.102 0.898
42 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.374 -6.050 -22.439 24.703
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.189 5.189
2 C -0.060 4.060
3 C 0.096 3.904
4 N -0.175 5.175
5 C -0.469 4.469
6 H 0.104 0.896
7 C -0.198 4.198
8 N -0.532 5.532
9 Si 0.812 3.188
10 H -0.184 1.184
11 H -0.208 1.208
12 H -0.206 1.206
13 C 0.244 3.756
14 O -0.494 6.494
15 C -0.150 4.150
16 C -0.153 4.153
17 C 0.314 3.686
18 O -0.450 6.450
19 N -0.345 5.345
20 C -0.010 4.010
21 C -0.099 4.099
22 C -0.303 4.303
23 S 0.364 5.636
24 C -0.348 4.348
25 C -0.163 4.163
26 C -0.146 4.146
27 C 0.043 3.957
28 H 0.140 0.860
29 H 0.151 0.849
30 H 0.083 0.917
31 H 0.127 0.873
32 H 0.096 0.904
33 H 0.118 0.882
34 H 0.128 0.872
35 H 0.109 0.891
36 H 0.110 0.890
37 H 0.126 0.874
38 H 0.095 0.905
39 H 0.204 0.796
40 H 0.175 0.825
41 H 0.120 0.880
42 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 7.254 -5.412 -23.692 25.362
hybrid contribution -0.088 -0.685 2.499 2.593
sum 7.165 -6.097 -21.193 23.187
Atomic orbital electron populations
1.80879 1.14799 1.09383 1.13823 1.29752 0.95865 0.91590 0.88807
1.19004 0.80125 0.86012 1.05286 1.43781 1.56662 1.10229 1.06862
1.19609 1.28736 1.16492 0.82018 0.89553 1.25947 0.94976 0.96625
1.02292 1.69938 1.18623 1.32827 1.31816 0.85071 0.78887 0.77974
0.76880 1.18392 1.20811 1.20644 1.20856 0.82282 0.85319 0.87106
1.90496 1.51784 1.20181 1.86964 1.21256 1.03218 0.99983 0.90566
1.21295 1.05003 0.99415 0.89557 1.20772 0.76430 0.84767 0.86663
1.90671 1.47861 1.19966 1.86517 1.48110 1.65117 1.13798 1.07516
1.21686 0.96320 1.02132 0.80873 1.20636 0.95327 0.92165 1.01728
1.24865 1.03895 1.02073 0.99465 1.84162 1.35688 1.17544 1.26201
1.25683 1.06595 1.03209 0.99322 1.20129 0.96752 0.99151 1.00285
1.19954 1.00909 0.96211 0.97559 1.20820 0.95606 0.81788 0.97486
0.85963 0.84862 0.91670 0.87253 0.90433 0.88184 0.87229 0.89102
0.89044 0.87356 0.90524 0.79605 0.82511 0.88046 0.87555
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -24.83 18.54 20.00 0.37 -24.46 16
2 C 0.26 11.56 12.82 89.44 1.15 12.70 16
3 C 0.22 8.72 4.91 84.57 0.42 9.13 16
4 N -0.46 -21.00 2.60 -645.42 -1.68 -22.68 16
5 C -0.34 -17.50 9.27 84.04 0.78 -16.72 16
6 H 0.09 4.71 7.43 -2.91 -0.02 4.68 16
7 C 0.00 0.19 4.84 84.93 0.41 0.60 16
8 N -0.89 -45.20 9.58 21.66 0.21 -44.99 16
9 Si 0.99 39.79 29.60 68.60 2.03 41.83 16
10 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16
11 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16
12 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16
13 C 0.45 19.89 7.56 87.66 0.66 20.55 16
14 O -0.61 -30.26 15.65 -3.06 -0.05 -30.31 16
15 C -0.11 -3.75 3.60 29.85 0.11 -3.64 16
16 C -0.11 -3.25 3.39 29.85 0.10 -3.15 16
17 C 0.52 14.58 7.71 87.65 0.68 15.25 16
18 O -0.57 -19.38 15.42 -3.03 -0.05 -19.43 16
19 N -0.61 -13.24 2.92 -819.81 -2.39 -15.63 16
20 C 0.11 2.04 6.40 86.34 0.55 2.59 16
21 C -0.06 -0.91 6.43 30.14 0.19 -0.72 16
22 C -0.19 -3.19 6.39 25.08 0.16 -3.03 16
23 S 0.10 1.45 23.31 -56.49 -1.32 0.13 16
24 C -0.21 -2.89 11.20 66.65 0.75 -2.14 16
25 C -0.13 -2.00 10.00 21.31 0.21 -1.79 16
26 C -0.13 -2.31 5.86 -19.90 -0.12 -2.43 16
27 C 0.17 2.91 6.52 86.12 0.56 3.47 16
28 H 0.12 4.85 6.63 -2.39 -0.02 4.84 16
29 H 0.13 3.92 6.69 -2.39 -0.02 3.91 16
30 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16
31 H 0.11 3.28 7.37 -2.39 -0.02 3.26 16
32 H 0.08 2.83 7.45 -2.39 -0.02 2.81 16
33 H 0.10 2.88 8.05 -2.39 -0.02 2.86 16
34 H 0.11 2.96 7.53 -2.39 -0.02 2.95 16
35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
36 H 0.09 1.88 7.02 -2.39 -0.02 1.86 16
37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16
38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
39 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16
40 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16
41 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16
42 H 0.11 1.84 6.16 -2.39 -0.01 1.83 16
Total: -1.00 -70.04 367.16 4.81 -65.23
By element:
Atomic # 1 Polarization: 18.56 SS G_CDS: 1.07 Total: 19.63 kcal
Atomic # 6 Polarization: 24.07 SS G_CDS: 6.61 Total: 30.68 kcal
Atomic # 7 Polarization: -104.27 SS G_CDS: -3.49 Total: -107.76 kcal
Atomic # 8 Polarization: -49.64 SS G_CDS: -0.09 Total: -49.74 kcal
Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.83 kcal
Atomic # 16 Polarization: 1.45 SS G_CDS: -1.32 Total: 0.13 kcal
Total: -70.04 4.81 -65.23 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299721112.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.314 kcal
(2) G-P(sol) polarization free energy of solvation -70.039 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.725 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.231 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.917 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds