Wall clock time and date at job start Wed Apr 1 2020 04:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00203 * 2 1 4 4 H 1.48503 * 109.47455 * 240.00732 * 3 2 1 5 5 H 1.48501 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46838 * 120.00378 * 3 2 1 7 7 C 1.37877 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00341 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00176 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47122 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99798 * 276.70350 * 10 9 7 12 12 C 1.50708 * 109.46725 * 275.00068 * 11 10 9 13 13 C 1.38676 * 120.41671 * 269.71847 * 12 11 10 14 14 C 1.38629 * 118.41428 * 179.78352 * 13 12 11 15 15 C 1.38224 * 119.16592 * 0.51968 * 14 13 12 16 16 N 1.31858 * 120.75987 * 359.72279 * 15 14 13 17 17 C 1.31880 * 121.72947 * 0.02562 * 16 15 14 18 18 S 1.65599 * 119.99976 * 96.70551 * 10 9 7 19 19 O 1.42104 * 106.40193 * 330.66371 * 18 10 9 20 20 O 1.42104 * 106.40110 * 197.74358 * 18 10 9 21 21 C 1.76202 * 107.21860 * 84.20441 * 18 10 9 22 22 C 1.38117 * 120.03876 * 345.28506 * 21 18 10 23 23 C 1.38264 * 120.07867 * 180.25479 * 22 21 18 24 24 C 1.38311 * 120.14450 * 0.04482 * 23 22 21 25 25 C 1.38074 * 120.07654 * 359.95554 * 24 23 22 26 26 C 1.38887 * 120.03519 * 165.56174 * 21 18 10 27 27 N 1.39678 * 120.07679 * 359.70182 * 26 21 18 28 28 H 0.97001 * 119.99493 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46751 * 59.99608 * 9 7 2 30 30 H 1.08999 * 109.46409 * 300.00033 * 9 7 2 31 31 H 1.09000 * 109.47251 * 34.99842 * 11 10 9 32 32 H 1.08996 * 109.47320 * 155.00568 * 11 10 9 33 33 H 1.07996 * 120.78949 * 0.02957 * 13 12 11 34 34 H 1.08004 * 120.41845 * 180.21886 * 14 13 12 35 35 H 1.07993 * 119.62261 * 179.74634 * 15 14 13 36 36 H 1.08003 * 119.62198 * 180.02562 * 17 16 15 37 37 H 1.08004 * 119.96292 * 0.27618 * 22 21 18 38 38 H 1.08001 * 119.93019 * 180.02562 * 23 22 21 39 39 H 1.08001 * 119.95813 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.03847 * 179.97438 * 25 24 23 41 41 H 0.96994 * 119.99503 * 6.57720 * 27 26 21 42 42 H 0.97003 * 119.99713 * 186.57588 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7916 -4.0732 -1.2606 12 6 1.8606 -5.0584 -1.9194 13 6 1.9696 -6.4146 -1.6513 14 6 1.0888 -7.2835 -2.2767 15 6 0.1451 -6.7740 -3.1487 16 7 0.0738 -5.4785 -3.3836 17 6 0.8918 -4.6223 -2.8029 18 16 2.6138 -4.3509 1.4238 19 8 2.4960 -3.3615 2.4370 20 8 3.8153 -5.0670 1.1727 21 6 1.3760 -5.5586 1.7613 22 6 0.1779 -5.5313 1.0747 23 6 -0.7960 -6.4754 1.3426 24 6 -0.5746 -7.4495 2.2992 25 6 0.6208 -7.4826 2.9893 26 6 1.6018 -6.5357 2.7222 27 7 2.8124 -6.5666 3.4181 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.9460 -3.2209 -1.9223 32 1 3.7482 -4.5556 -1.0600 33 1 2.7201 -6.7846 -0.9686 34 1 1.1425 -8.3457 -2.0886 35 1 -0.5420 -7.4447 -3.6430 36 1 0.8029 -3.5680 -3.0198 37 1 0.0017 -4.7717 0.3273 38 1 -1.7318 -6.4521 0.8039 39 1 -1.3376 -8.1853 2.5063 40 1 0.7929 -8.2433 3.7364 41 1 3.4576 -5.8519 3.3008 42 1 3.0079 -7.3027 4.0188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314051340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:20 Heat of formation + Delta-G solvation = -3.272843 kcal Electronic energy + Delta-G solvation = -29398.153520 eV Core-core repulsion = 25470.251500 eV Total energy + Delta-G solvation = -3927.902019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.98734 -39.26387 -36.67676 -36.17843 -35.42569 -34.49089 -32.94274 -32.03970 -31.20539 -30.99811 -28.64168 -27.54348 -25.43041 -23.43287 -23.20635 -22.59620 -22.29980 -21.45642 -18.61951 -17.67899 -17.44254 -16.90201 -16.83548 -16.36255 -16.25185 -15.88917 -15.53350 -15.04528 -14.60173 -14.56116 -14.21773 -13.98731 -13.72500 -13.46262 -13.35485 -13.16553 -12.85499 -12.42986 -12.32803 -12.21984 -11.93814 -11.55565 -11.49770 -11.41561 -11.21682 -11.06539 -10.79202 -10.78929 -10.60857 -10.30227 -10.09217 -9.86891 -9.64221 -9.25496 -9.18438 -8.83487 -8.47102 -8.23065 -7.76875 -6.09025 -4.13565 0.92091 1.10416 1.30976 1.46041 1.60899 3.32929 3.37282 3.38852 3.43721 3.62252 3.71785 4.04640 4.16360 4.42344 4.63798 4.82415 4.96340 4.99913 5.07103 5.14060 5.18712 5.25316 5.27207 5.32587 5.42258 5.49102 5.69923 5.75526 5.91681 5.94617 6.00592 6.11834 6.24653 6.28063 6.31823 6.54038 6.54617 6.78589 6.90197 7.09971 7.24436 7.28294 7.45891 7.48232 7.87445 8.14184 8.16633 8.88164 9.51961 10.99542 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009800 B = 0.005448 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.425598 B = 5137.941486 C = 6578.098432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.976 5.976 11 C 0.162 3.838 12 C -0.153 4.153 13 C -0.067 4.067 14 C -0.175 4.175 15 C 0.092 3.908 16 N -0.486 5.486 17 C 0.121 3.879 18 S 2.684 3.316 19 O -0.942 6.942 20 O -0.980 6.980 21 C -0.739 4.739 22 C 0.025 3.975 23 C -0.193 4.193 24 C -0.029 4.029 25 C -0.216 4.216 26 C 0.305 3.695 27 N -0.872 5.872 28 H 0.265 0.735 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.398 0.602 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 -17.374 0.008 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.814 5.814 11 C 0.035 3.965 12 C -0.157 4.157 13 C -0.094 4.094 14 C -0.195 4.195 15 C -0.065 4.065 16 N -0.195 5.195 17 C -0.036 4.036 18 S 2.773 3.227 19 O -0.932 6.932 20 O -0.970 6.970 21 C -0.830 4.830 22 C 0.006 3.994 23 C -0.213 4.213 24 C -0.048 4.048 25 C -0.239 4.239 26 C 0.196 3.804 27 N -0.411 5.411 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.166 0.834 36 H 0.179 0.821 37 H 0.152 0.848 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.228 0.772 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.940 -16.732 -0.048 16.759 hybrid contribution 0.563 0.098 0.787 0.973 sum 1.503 -16.635 0.739 16.719 Atomic orbital electron populations 1.69903 1.05972 1.27339 1.49959 1.24912 0.94877 0.99234 0.94794 0.86582 0.79608 0.82620 0.78809 1.20095 1.21194 1.20012 1.21381 0.93642 0.90326 1.51635 0.91945 1.19207 0.86987 0.82078 0.98625 1.57402 1.59775 1.44894 1.19344 1.20135 0.93635 0.96530 0.86167 1.21543 0.99787 0.95247 0.99078 1.21612 0.97751 0.92904 0.97094 1.22033 0.97448 1.00758 0.99215 1.22696 0.96439 0.92070 0.95303 1.67739 1.24394 1.03502 1.23836 1.22876 0.89433 0.99834 0.91466 1.02231 0.73563 0.73214 0.73694 1.93648 1.86198 1.56983 1.56401 1.93495 1.43447 1.74744 1.85359 1.30570 1.18674 1.21490 1.12242 1.20750 0.89939 0.95255 0.93506 1.20985 1.00353 0.97957 1.02039 1.21065 0.95313 0.95907 0.92518 1.20585 0.94915 1.02446 1.05933 1.17058 0.85452 0.91059 0.86867 1.42816 1.18002 1.29874 1.50458 0.92532 0.94166 0.94312 0.87798 0.88886 0.84966 0.85353 0.83355 0.82101 0.84794 0.85836 0.85762 0.85713 0.77243 0.76500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -14.14 9.37 -34.44 -0.32 -14.46 16 8 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.25 5.95 4.09 -5.19 -0.02 5.92 16 10 N -0.98 -19.15 2.00 -116.94 -0.23 -19.38 16 11 C 0.16 2.65 5.80 -5.19 -0.03 2.62 16 12 C -0.15 -2.27 5.48 -104.48 -0.57 -2.84 16 13 C -0.07 -0.90 9.75 -39.28 -0.38 -1.28 16 14 C -0.17 -2.05 10.11 -39.44 -0.40 -2.45 16 15 C 0.09 1.15 11.18 -17.55 -0.20 0.95 16 16 N -0.49 -7.33 10.36 -13.25 -0.14 -7.47 16 17 C 0.12 1.86 10.55 -17.55 -0.19 1.68 16 18 S 2.68 52.73 4.53 -107.50 -0.49 52.24 16 19 O -0.94 -22.47 17.17 -57.17 -0.98 -23.46 16 20 O -0.98 -18.61 15.16 -57.17 -0.87 -19.48 16 21 C -0.74 -12.67 5.85 -39.39 -0.23 -12.90 16 22 C 0.02 0.40 9.45 -39.62 -0.37 0.03 16 23 C -0.19 -2.65 10.04 -39.54 -0.40 -3.05 16 24 C -0.03 -0.35 10.04 -39.61 -0.40 -0.74 16 25 C -0.22 -2.67 9.90 -39.38 -0.39 -3.06 16 26 C 0.30 4.55 6.72 -83.78 -0.56 3.99 16 27 N -0.87 -11.28 8.86 32.41 0.29 -11.00 16 28 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.04 0.94 7.68 -51.93 -0.40 0.54 16 30 H 0.04 1.00 7.69 -51.93 -0.40 0.60 16 31 H 0.10 1.66 8.06 -51.93 -0.42 1.24 16 32 H 0.09 1.42 6.83 -51.93 -0.35 1.06 16 33 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.16 2.49 7.93 -52.48 -0.42 2.07 16 37 H 0.13 2.31 6.41 -52.48 -0.34 1.97 16 38 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.40 5.67 6.56 -40.82 -0.27 5.40 16 42 H 0.41 3.65 8.85 -40.82 -0.36 3.29 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -33.19 370.49 -10.71 -43.90 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.03 Total: 11.32 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -4.56 Total: -23.94 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.65 Total: -62.37 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.85 Total: -42.94 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 52.73 SS G_CDS: -0.49 Total: 52.24 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.19 -10.71 -43.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314051340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.628 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds