Wall clock time and date at job start Wed Apr 1 2020 04:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00203 * 2 1 4 4 H 1.48503 * 109.47455 * 240.00732 * 3 2 1 5 5 H 1.48501 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46838 * 120.00378 * 3 2 1 7 7 C 1.37877 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00341 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00176 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47122 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99798 * 276.70350 * 10 9 7 12 12 C 1.50708 * 109.46725 * 275.00068 * 11 10 9 13 13 C 1.38676 * 120.41671 * 269.71847 * 12 11 10 14 14 C 1.38629 * 118.41428 * 179.78352 * 13 12 11 15 15 C 1.38224 * 119.16592 * 0.51968 * 14 13 12 16 16 N 1.31858 * 120.75987 * 359.72279 * 15 14 13 17 17 C 1.31880 * 121.72947 * 0.02562 * 16 15 14 18 18 S 1.65599 * 119.99976 * 96.70551 * 10 9 7 19 19 O 1.42104 * 106.40193 * 330.66371 * 18 10 9 20 20 O 1.42104 * 106.40110 * 197.74358 * 18 10 9 21 21 C 1.76202 * 107.21860 * 84.20441 * 18 10 9 22 22 C 1.38117 * 120.03876 * 345.28506 * 21 18 10 23 23 C 1.38264 * 120.07867 * 180.25479 * 22 21 18 24 24 C 1.38311 * 120.14450 * 0.04482 * 23 22 21 25 25 C 1.38074 * 120.07654 * 359.95554 * 24 23 22 26 26 C 1.38887 * 120.03519 * 165.56174 * 21 18 10 27 27 N 1.39678 * 120.07679 * 359.70182 * 26 21 18 28 28 H 0.97001 * 119.99493 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46751 * 59.99608 * 9 7 2 30 30 H 1.08999 * 109.46409 * 300.00033 * 9 7 2 31 31 H 1.09000 * 109.47251 * 34.99842 * 11 10 9 32 32 H 1.08996 * 109.47320 * 155.00568 * 11 10 9 33 33 H 1.07996 * 120.78949 * 0.02957 * 13 12 11 34 34 H 1.08004 * 120.41845 * 180.21886 * 14 13 12 35 35 H 1.07993 * 119.62261 * 179.74634 * 15 14 13 36 36 H 1.08003 * 119.62198 * 180.02562 * 17 16 15 37 37 H 1.08004 * 119.96292 * 0.27618 * 22 21 18 38 38 H 1.08001 * 119.93019 * 180.02562 * 23 22 21 39 39 H 1.08001 * 119.95813 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.03847 * 179.97438 * 25 24 23 41 41 H 0.96994 * 119.99503 * 6.57720 * 27 26 21 42 42 H 0.97003 * 119.99713 * 186.57588 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7916 -4.0732 -1.2606 12 6 1.8606 -5.0584 -1.9194 13 6 1.9696 -6.4146 -1.6513 14 6 1.0888 -7.2835 -2.2767 15 6 0.1451 -6.7740 -3.1487 16 7 0.0738 -5.4785 -3.3836 17 6 0.8918 -4.6223 -2.8029 18 16 2.6138 -4.3509 1.4238 19 8 2.4960 -3.3615 2.4370 20 8 3.8153 -5.0670 1.1727 21 6 1.3760 -5.5586 1.7613 22 6 0.1779 -5.5313 1.0747 23 6 -0.7960 -6.4754 1.3426 24 6 -0.5746 -7.4495 2.2992 25 6 0.6208 -7.4826 2.9893 26 6 1.6018 -6.5357 2.7222 27 7 2.8124 -6.5666 3.4181 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.9460 -3.2209 -1.9223 32 1 3.7482 -4.5556 -1.0600 33 1 2.7201 -6.7846 -0.9686 34 1 1.1425 -8.3457 -2.0886 35 1 -0.5420 -7.4447 -3.6430 36 1 0.8029 -3.5680 -3.0198 37 1 0.0017 -4.7717 0.3273 38 1 -1.7318 -6.4521 0.8039 39 1 -1.3376 -8.1853 2.5063 40 1 0.7929 -8.2433 3.7364 41 1 3.4576 -5.8519 3.3008 42 1 3.0079 -7.3027 4.0188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314051340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:19 Heat of formation + Delta-G solvation = -26.372705 kcal Electronic energy + Delta-G solvation = -29399.155205 eV Core-core repulsion = 25470.251500 eV Total energy + Delta-G solvation = -3928.903704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08429 -40.34047 -38.27074 -37.69924 -37.02239 -35.61646 -34.79548 -33.33480 -32.38560 -32.13706 -29.70863 -29.30408 -26.94466 -24.73610 -24.32853 -24.16250 -23.42266 -22.68293 -20.04511 -19.14173 -18.76034 -18.36403 -17.96567 -17.85339 -17.49165 -17.33124 -16.92554 -16.41982 -16.17723 -15.67516 -15.53569 -15.24584 -14.95195 -14.62971 -14.57933 -14.38446 -14.17629 -13.92655 -13.90873 -13.46505 -13.39765 -13.17379 -13.14979 -12.96336 -12.68274 -12.51596 -12.42668 -12.39900 -11.97602 -11.84687 -11.78798 -11.58017 -10.73607 -10.57774 -10.40454 -10.28291 -9.93811 -9.85130 -8.82965 -8.18745 -6.30194 -0.55634 -0.01047 0.22218 0.39136 0.53143 1.41147 1.44478 1.51203 1.92116 2.42626 2.53876 2.64398 2.74965 2.95616 3.13061 3.58254 3.61950 3.73891 3.84578 3.92004 4.07227 4.09808 4.14549 4.28051 4.36634 4.41725 4.61289 4.63242 4.73100 4.87474 4.91237 4.92342 4.98743 5.16312 5.23923 5.28872 5.33128 5.47488 5.50756 5.65892 5.75991 5.83944 5.85551 6.10104 6.17258 6.60119 6.77229 7.09654 7.38453 8.88949 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009800 B = 0.005448 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.425598 B = 5137.941486 C = 6578.098432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.274 3.726 10 N -0.979 5.979 11 C 0.158 3.842 12 C -0.158 4.158 13 C -0.070 4.070 14 C -0.161 4.161 15 C 0.093 3.907 16 N -0.508 5.508 17 C 0.106 3.894 18 S 2.688 3.312 19 O -0.997 6.997 20 O -0.982 6.982 21 C -0.755 4.755 22 C 0.004 3.996 23 C -0.195 4.195 24 C -0.015 4.015 25 C -0.207 4.207 26 C 0.291 3.709 27 N -0.868 5.868 28 H 0.267 0.733 29 H 0.036 0.964 30 H 0.010 0.990 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.165 0.835 35 H 0.183 0.817 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.389 0.611 42 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.444 -20.732 0.326 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.151 3.849 10 N -0.816 5.816 11 C 0.033 3.967 12 C -0.162 4.162 13 C -0.097 4.097 14 C -0.180 4.180 15 C -0.064 4.064 16 N -0.217 5.217 17 C -0.051 4.051 18 S 2.783 3.217 19 O -0.988 6.988 20 O -0.972 6.972 21 C -0.850 4.850 22 C -0.016 4.016 23 C -0.216 4.216 24 C -0.033 4.033 25 C -0.230 4.230 26 C 0.181 3.819 27 N -0.408 5.408 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.154 0.846 34 H 0.183 0.817 35 H 0.200 0.800 36 H 0.163 0.837 37 H 0.130 0.870 38 H 0.158 0.842 39 H 0.187 0.813 40 H 0.182 0.818 41 H 0.217 0.783 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.402 -20.080 0.255 20.086 hybrid contribution 0.697 0.935 0.721 1.371 sum 1.099 -19.145 0.976 19.201 Atomic orbital electron populations 1.70006 1.07201 1.28135 1.50880 1.25704 0.95726 1.02508 0.94543 0.85676 0.78592 0.78876 0.78998 1.18580 1.20389 1.20404 1.21762 0.93692 0.91977 1.51231 0.92456 1.18672 0.86965 0.82416 0.96851 1.57184 1.59243 1.44577 1.20628 1.20261 0.94446 0.97032 0.84985 1.21274 0.99743 0.95714 0.99457 1.21736 0.98347 0.92353 0.97263 1.22378 0.95825 1.02211 0.97580 1.23302 0.96786 0.91377 0.94971 1.67727 1.24620 1.04883 1.24486 1.22682 0.90336 0.99560 0.92521 1.01649 0.74118 0.73204 0.72762 1.93574 1.87265 1.59695 1.58228 1.93473 1.44241 1.74312 1.85166 1.29959 1.18219 1.21957 1.14864 1.20667 0.90800 0.96182 0.93956 1.21253 1.00114 0.97607 1.02641 1.21574 0.95892 0.95410 0.90473 1.21068 0.93974 1.01939 1.06037 1.17381 0.86722 0.91228 0.86575 1.42851 1.17288 1.30207 1.50449 0.92410 0.94652 0.97188 0.88293 0.87868 0.84570 0.81725 0.79965 0.83686 0.87009 0.84216 0.81324 0.81828 0.78251 0.74313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.09 13.29 21.45 0.28 -53.81 16 2 C 0.02 0.85 5.46 84.65 0.46 1.31 16 3 Si 0.95 44.50 29.54 68.60 2.03 46.52 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 7 C -0.55 -30.63 9.37 25.60 0.24 -30.39 16 8 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.27 13.80 4.09 85.63 0.35 14.15 16 10 N -0.98 -40.76 2.00 -523.90 -1.05 -41.80 16 11 C 0.16 5.47 5.80 85.64 0.50 5.97 16 12 C -0.16 -4.83 5.48 -19.77 -0.11 -4.94 16 13 C -0.07 -1.81 9.75 22.47 0.22 -1.60 16 14 C -0.16 -3.31 10.11 22.36 0.23 -3.08 16 15 C 0.09 2.09 11.18 84.69 0.95 3.03 16 16 N -0.51 -15.18 10.36 -195.85 -2.03 -17.20 16 17 C 0.11 3.39 10.55 84.67 0.89 4.28 16 18 S 2.69 110.33 4.53 -56.49 -0.26 110.07 16 19 O -1.00 -50.48 17.17 -128.00 -2.20 -52.68 16 20 O -0.98 -38.20 15.16 -128.00 -1.94 -40.14 16 21 C -0.75 -25.91 5.85 22.40 0.13 -25.78 16 22 C 0.00 0.12 9.45 22.25 0.21 0.33 16 23 C -0.20 -4.90 10.04 22.29 0.22 -4.68 16 24 C -0.01 -0.28 10.04 22.25 0.22 -0.06 16 25 C -0.21 -4.26 9.90 22.40 0.22 -4.03 16 26 C 0.29 8.17 6.72 38.21 0.26 8.42 16 27 N -0.87 -21.23 8.86 -51.37 -0.45 -21.69 16 28 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.04 1.79 7.68 -2.39 -0.02 1.77 16 30 H 0.01 0.57 7.69 -2.39 -0.02 0.55 16 31 H 0.10 3.42 8.06 -2.39 -0.02 3.40 16 32 H 0.10 3.28 6.83 -2.39 -0.02 3.26 16 33 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 34 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 35 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.15 4.93 7.93 -2.91 -0.02 4.91 16 37 H 0.11 4.08 6.41 -2.91 -0.02 4.07 16 38 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 39 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.39 11.07 6.56 -92.71 -0.61 10.46 16 42 H 0.42 6.60 8.85 -92.71 -0.82 5.78 16 Total: -1.00 -75.40 370.49 -0.98 -76.38 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.36 Total: 31.41 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 4.99 Total: -37.06 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -3.24 Total: -134.50 kcal Atomic # 8 Polarization: -88.68 SS G_CDS: -4.14 Total: -92.82 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 110.33 SS G_CDS: -0.26 Total: 110.07 kcal Total: -75.40 -0.98 -76.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314051340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.005 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds