Wall clock time and date at job start Wed Apr 1 2020 04:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99803 * 2 1 4 4 H 1.48503 * 109.47173 * 239.99774 * 3 2 1 5 5 H 1.48504 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47568 * 119.99546 * 3 2 1 7 7 C 1.37879 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99976 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46984 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99833 * 274.99775 * 10 9 7 12 12 C 1.50705 * 109.47324 * 274.99793 * 11 10 9 13 13 C 1.38672 * 120.42034 * 269.72253 * 12 11 10 14 14 C 1.38624 * 118.41802 * 179.78115 * 13 12 11 15 15 C 1.38228 * 119.16168 * 0.51235 * 14 13 12 16 16 N 1.31854 * 120.76438 * 359.73150 * 15 14 13 17 17 C 1.31888 * 121.72532 * 359.97438 * 16 15 14 18 18 S 1.65597 * 120.00324 * 95.00121 * 10 9 7 19 19 O 1.42100 * 106.40806 * 156.45823 * 18 10 9 20 20 O 1.42103 * 106.40235 * 23.53613 * 18 10 9 21 21 C 1.76203 * 107.21756 * 269.99881 * 18 10 9 22 22 C 1.38306 * 119.96387 * 270.01957 * 21 18 10 23 23 C 1.38262 * 120.14952 * 180.02562 * 22 21 18 24 24 C 1.38127 * 120.07652 * 359.97438 * 23 22 21 25 25 C 1.38886 * 119.92319 * 359.97438 * 24 23 22 26 26 N 1.39670 * 120.07347 * 180.02562 * 25 24 23 27 27 C 1.38085 * 119.96343 * 89.99753 * 21 18 10 28 28 H 0.96996 * 120.00336 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47267 * 59.99910 * 9 7 2 30 30 H 1.09002 * 109.47089 * 299.99895 * 9 7 2 31 31 H 1.09001 * 109.47383 * 35.00498 * 11 10 9 32 32 H 1.09007 * 109.46960 * 155.00229 * 11 10 9 33 33 H 1.08000 * 120.78749 * 0.02562 * 13 12 11 34 34 H 1.08004 * 120.41817 * 180.22156 * 14 13 12 35 35 H 1.08000 * 119.61526 * 179.74315 * 15 14 13 36 36 H 1.07996 * 119.61732 * 180.02562 * 17 16 15 37 37 H 1.07998 * 119.92297 * 0.02562 * 22 21 18 38 38 H 1.08001 * 119.96245 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.03609 * 180.02562 * 24 23 22 40 40 H 0.97006 * 120.00314 * 180.02562 * 26 25 24 41 41 H 0.96996 * 120.00101 * 0.02562 * 26 25 24 42 42 H 1.07998 * 120.03376 * 359.72290 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.7633 -4.0974 -1.2634 12 6 1.8180 -5.0951 -1.8818 13 6 1.9334 -6.4459 -1.5901 14 6 1.0391 -7.3266 -2.1785 15 6 0.0757 -6.8339 -3.0386 16 7 -0.0013 -5.5431 -3.2969 17 6 0.8289 -4.6759 -2.7508 18 16 2.6464 -4.3232 1.4291 19 8 3.0863 -5.6350 1.1054 20 8 1.5968 -4.0606 2.3504 21 6 4.0603 -3.4574 2.0258 22 6 5.3286 -3.8724 1.6625 23 6 6.4407 -3.1962 2.1289 24 6 6.2884 -2.1030 2.9592 25 6 5.0162 -1.6828 3.3252 26 7 4.8585 -0.5774 4.1642 27 6 3.9008 -2.3650 2.8552 28 1 -0.4850 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.9026 -3.2582 -1.9448 32 1 3.7244 -4.5760 -1.0751 33 1 2.6993 -6.8027 -0.9174 34 1 1.0973 -8.3849 -1.9711 35 1 -0.6221 -7.5140 -3.5043 36 1 0.7348 -3.6261 -2.9861 37 1 5.4505 -4.7267 1.0131 38 1 7.4297 -3.5227 1.8429 39 1 7.1576 -1.5750 3.3228 40 1 3.9694 -0.2851 4.4194 41 1 5.6379 -0.1020 4.4917 42 1 2.9100 -2.0385 3.1346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314128924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:15 Heat of formation + Delta-G solvation = -7.565661 kcal Electronic energy + Delta-G solvation = -28752.303340 eV Core-core repulsion = 24824.215170 eV Total energy + Delta-G solvation = -3928.088170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.83904 -39.07894 -36.71784 -35.99559 -35.26376 -34.36815 -32.93819 -31.94533 -31.04087 -30.90426 -28.49303 -27.52098 -25.35767 -23.31043 -23.13375 -22.46540 -22.06674 -21.45668 -18.60890 -17.61851 -17.02352 -16.79162 -16.71991 -16.33719 -15.89393 -15.81364 -15.42501 -15.16679 -14.79258 -14.60402 -14.02932 -13.69766 -13.48746 -13.30078 -13.21952 -13.14527 -12.71043 -12.45196 -12.29310 -11.96046 -11.86861 -11.60290 -11.49298 -11.26580 -11.22164 -11.08788 -10.88384 -10.71135 -10.55717 -10.39450 -10.09117 -9.87510 -9.48285 -9.15113 -9.03176 -8.73101 -8.52223 -8.14413 -7.43420 -6.13829 -4.20432 0.89890 1.24842 1.43573 1.61255 1.73440 3.22239 3.28657 3.29886 3.53895 3.89225 3.98875 4.13848 4.33674 4.38331 4.74627 4.83230 5.06690 5.12240 5.16824 5.20006 5.21267 5.25240 5.41542 5.42229 5.55183 5.71529 5.81480 5.85086 5.97831 6.06754 6.09453 6.31355 6.36988 6.45623 6.48834 6.53625 6.67176 6.91893 7.02781 7.26640 7.37119 7.53886 7.57786 7.82619 7.84431 8.10535 8.27471 8.84728 9.45743 10.93950 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009618 B = 0.005292 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.441124 B = 5290.148652 C = 7320.239501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.244 3.756 10 N -0.976 5.976 11 C 0.174 3.826 12 C -0.151 4.151 13 C -0.062 4.062 14 C -0.183 4.183 15 C 0.090 3.910 16 N -0.491 5.491 17 C 0.121 3.879 18 S 2.689 3.311 19 O -0.977 6.977 20 O -0.957 6.957 21 C -0.615 4.615 22 C -0.087 4.087 23 C -0.099 4.099 24 C -0.155 4.155 25 C 0.194 3.806 26 N -0.879 5.879 27 C -0.071 4.071 28 H 0.265 0.735 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.402 0.598 41 H 0.395 0.605 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.179 -7.506 1.584 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.122 3.878 10 N -0.813 5.813 11 C 0.047 3.953 12 C -0.155 4.155 13 C -0.089 4.089 14 C -0.203 4.203 15 C -0.067 4.067 16 N -0.200 5.200 17 C -0.037 4.037 18 S 2.779 3.221 19 O -0.967 6.967 20 O -0.948 6.948 21 C -0.702 4.702 22 C -0.108 4.108 23 C -0.119 4.119 24 C -0.179 4.179 25 C 0.089 3.911 26 N -0.418 5.418 27 C -0.095 4.095 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.177 0.823 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.230 0.770 41 H 0.223 0.777 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.945 -7.772 1.404 11.933 hybrid contribution 1.640 1.716 0.831 2.515 sum 10.584 -6.056 2.235 12.398 Atomic orbital electron populations 1.69922 1.05928 1.27248 1.49429 1.24907 0.94728 0.98997 0.94967 0.86676 0.79574 0.83158 0.78704 1.20222 1.21268 1.20252 1.21501 0.93592 0.90617 1.52247 0.91887 1.19286 0.87132 0.81479 0.99856 1.57439 1.57072 1.49158 1.17679 1.19933 0.93212 0.95481 0.86675 1.21434 0.99766 0.95394 0.98950 1.21869 0.98075 0.92725 0.96237 1.22109 0.97540 1.00920 0.99720 1.22713 0.96485 0.92225 0.95271 1.67722 1.24986 1.03256 1.23990 1.22836 0.89383 0.99586 0.91860 1.01931 0.73602 0.73256 0.73262 1.93472 1.83395 1.35543 1.84285 1.93551 1.53337 1.85561 1.62334 1.30901 1.17379 1.11274 1.10613 1.20581 0.90906 0.99544 0.99765 1.20884 0.98498 0.95234 0.97244 1.20751 0.95109 0.99609 1.02387 1.17816 0.93732 0.88228 0.91311 1.42415 1.10975 1.32860 1.55551 1.20390 0.98509 0.93834 0.96743 0.92508 0.93895 0.92927 0.88493 0.90230 0.83446 0.85197 0.83347 0.82298 0.85104 0.85748 0.86162 0.76967 0.77693 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.59 13.29 55.43 0.74 -23.86 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -13.52 9.38 -34.44 -0.32 -13.84 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.24 5.76 5.43 -5.20 -0.03 5.73 16 10 N -0.98 -19.09 2.75 -116.95 -0.32 -19.41 16 11 C 0.17 2.84 5.50 -5.19 -0.03 2.81 16 12 C -0.15 -2.47 5.48 -104.48 -0.57 -3.04 16 13 C -0.06 -0.94 9.43 -39.28 -0.37 -1.31 16 14 C -0.18 -2.45 10.11 -39.44 -0.40 -2.85 16 15 C 0.09 1.27 11.18 -17.55 -0.20 1.07 16 16 N -0.49 -8.23 10.36 -13.25 -0.14 -8.36 16 17 C 0.12 2.04 10.55 -17.55 -0.19 1.85 16 18 S 2.69 51.99 5.65 -107.50 -0.61 51.38 16 19 O -0.98 -18.09 14.48 -57.17 -0.83 -18.92 16 20 O -0.96 -21.72 15.83 -57.17 -0.91 -22.62 16 21 C -0.62 -10.93 5.97 -39.61 -0.24 -11.16 16 22 C -0.09 -1.32 9.52 -39.55 -0.38 -1.69 16 23 C -0.10 -1.32 10.04 -39.61 -0.40 -1.71 16 24 C -0.16 -2.08 9.90 -39.38 -0.39 -2.47 16 25 C 0.19 2.97 6.75 -83.79 -0.57 2.40 16 26 N -0.88 -10.81 9.09 32.41 0.29 -10.52 16 27 C -0.07 -1.28 9.37 -39.38 -0.37 -1.65 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.04 1.05 7.64 -51.93 -0.40 0.65 16 30 H 0.05 1.39 6.92 -51.93 -0.36 1.03 16 31 H 0.10 1.53 8.06 -51.93 -0.42 1.11 16 32 H 0.08 1.10 7.56 -51.92 -0.39 0.71 16 33 H 0.15 2.16 6.72 -52.49 -0.35 1.80 16 34 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.16 2.64 7.90 -52.49 -0.41 2.23 16 37 H 0.13 1.74 7.61 -52.49 -0.40 1.34 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.40 4.75 8.84 -40.82 -0.36 4.39 16 41 H 0.40 3.70 8.84 -40.82 -0.36 3.34 16 42 H 0.14 2.67 7.62 -52.49 -0.40 2.27 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -32.18 372.45 -10.80 -42.99 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.09 Total: 12.65 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -4.54 Total: -24.20 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 0.57 Total: -62.15 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.73 Total: -41.54 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 51.99 SS G_CDS: -0.61 Total: 51.38 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.18 -10.80 -42.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314128924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.422 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds