Wall clock time and date at job start Wed Apr 1 2020 04:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99803 * 2 1 4 4 H 1.48503 * 109.47173 * 239.99774 * 3 2 1 5 5 H 1.48504 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47568 * 119.99546 * 3 2 1 7 7 C 1.37879 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99976 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46984 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99833 * 274.99775 * 10 9 7 12 12 C 1.50705 * 109.47324 * 274.99793 * 11 10 9 13 13 C 1.38672 * 120.42034 * 269.72253 * 12 11 10 14 14 C 1.38624 * 118.41802 * 179.78115 * 13 12 11 15 15 C 1.38228 * 119.16168 * 0.51235 * 14 13 12 16 16 N 1.31854 * 120.76438 * 359.73150 * 15 14 13 17 17 C 1.31888 * 121.72532 * 359.97438 * 16 15 14 18 18 S 1.65597 * 120.00324 * 95.00121 * 10 9 7 19 19 O 1.42100 * 106.40806 * 156.45823 * 18 10 9 20 20 O 1.42103 * 106.40235 * 23.53613 * 18 10 9 21 21 C 1.76203 * 107.21756 * 269.99881 * 18 10 9 22 22 C 1.38306 * 119.96387 * 270.01957 * 21 18 10 23 23 C 1.38262 * 120.14952 * 180.02562 * 22 21 18 24 24 C 1.38127 * 120.07652 * 359.97438 * 23 22 21 25 25 C 1.38886 * 119.92319 * 359.97438 * 24 23 22 26 26 N 1.39670 * 120.07347 * 180.02562 * 25 24 23 27 27 C 1.38085 * 119.96343 * 89.99753 * 21 18 10 28 28 H 0.96996 * 120.00336 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47267 * 59.99910 * 9 7 2 30 30 H 1.09002 * 109.47089 * 299.99895 * 9 7 2 31 31 H 1.09001 * 109.47383 * 35.00498 * 11 10 9 32 32 H 1.09007 * 109.46960 * 155.00229 * 11 10 9 33 33 H 1.08000 * 120.78749 * 0.02562 * 13 12 11 34 34 H 1.08004 * 120.41817 * 180.22156 * 14 13 12 35 35 H 1.08000 * 119.61526 * 179.74315 * 15 14 13 36 36 H 1.07996 * 119.61732 * 180.02562 * 17 16 15 37 37 H 1.07998 * 119.92297 * 0.02562 * 22 21 18 38 38 H 1.08001 * 119.96245 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.03609 * 180.02562 * 24 23 22 40 40 H 0.97006 * 120.00314 * 180.02562 * 26 25 24 41 41 H 0.96996 * 120.00101 * 0.02562 * 26 25 24 42 42 H 1.07998 * 120.03376 * 359.72290 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.7633 -4.0974 -1.2634 12 6 1.8180 -5.0951 -1.8818 13 6 1.9334 -6.4459 -1.5901 14 6 1.0391 -7.3266 -2.1785 15 6 0.0757 -6.8339 -3.0386 16 7 -0.0013 -5.5431 -3.2969 17 6 0.8289 -4.6759 -2.7508 18 16 2.6464 -4.3232 1.4291 19 8 3.0863 -5.6350 1.1054 20 8 1.5968 -4.0606 2.3504 21 6 4.0603 -3.4574 2.0258 22 6 5.3286 -3.8724 1.6625 23 6 6.4407 -3.1962 2.1289 24 6 6.2884 -2.1030 2.9592 25 6 5.0162 -1.6828 3.3252 26 7 4.8585 -0.5774 4.1642 27 6 3.9008 -2.3650 2.8552 28 1 -0.4850 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.9026 -3.2582 -1.9448 32 1 3.7244 -4.5760 -1.0751 33 1 2.6993 -6.8027 -0.9174 34 1 1.0973 -8.3849 -1.9711 35 1 -0.6221 -7.5140 -3.5043 36 1 0.7348 -3.6261 -2.9861 37 1 5.4505 -4.7267 1.0131 38 1 7.4297 -3.5227 1.8429 39 1 7.1576 -1.5750 3.3228 40 1 3.9694 -0.2851 4.4194 41 1 5.6379 -0.1020 4.4917 42 1 2.9100 -2.0385 3.1346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314128924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:14 Heat of formation + Delta-G solvation = -29.902894 kcal Electronic energy + Delta-G solvation = -28753.271955 eV Core-core repulsion = 24824.215170 eV Total energy + Delta-G solvation = -3929.056785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04365 -40.21377 -38.29249 -37.55095 -36.86125 -35.44713 -34.76909 -33.30472 -32.33591 -32.07423 -29.61854 -29.26078 -26.87577 -24.71721 -24.36641 -24.01580 -23.20584 -22.77253 -20.02197 -19.01285 -18.61705 -18.34635 -17.87361 -17.77091 -17.22176 -16.97370 -16.92276 -16.40413 -16.33703 -15.99346 -15.49059 -14.94110 -14.70337 -14.58008 -14.53809 -14.34248 -14.16922 -13.97045 -13.78994 -13.42901 -13.16521 -13.14424 -13.07514 -12.94115 -12.67159 -12.53592 -12.46454 -12.35202 -12.03591 -11.78821 -11.73697 -11.56597 -10.70712 -10.55585 -10.39716 -10.19544 -9.94463 -9.75600 -8.52737 -8.15070 -6.27849 -0.54420 -0.00881 0.23253 0.41282 0.59229 1.41189 1.42237 1.50186 2.08408 2.42549 2.66594 2.86459 2.95732 3.00607 3.16937 3.44103 3.60773 3.84888 3.95471 3.96069 4.12814 4.14635 4.22913 4.30616 4.34917 4.55642 4.65651 4.70810 4.74424 4.87854 4.92083 4.97381 5.19323 5.28496 5.29301 5.32169 5.39074 5.43480 5.53135 5.73628 5.85504 5.86260 5.89406 6.11492 6.50821 6.83737 6.96224 7.08005 7.41716 8.92802 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009618 B = 0.005292 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.441124 B = 5290.148652 C = 7320.239501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.016 3.984 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.069 0.931 9 C 0.263 3.737 10 N -0.979 5.979 11 C 0.169 3.831 12 C -0.162 4.162 13 C -0.072 4.072 14 C -0.173 4.173 15 C 0.087 3.913 16 N -0.516 5.516 17 C 0.101 3.899 18 S 2.693 3.307 19 O -0.971 6.971 20 O -1.003 7.003 21 C -0.626 4.626 22 C -0.095 4.095 23 C -0.090 4.090 24 C -0.148 4.148 25 C 0.187 3.813 26 N -0.871 5.871 27 C -0.111 4.111 28 H 0.264 0.736 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.154 0.846 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.402 0.598 41 H 0.411 0.589 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.737 -8.257 1.448 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.139 3.861 10 N -0.816 5.816 11 C 0.043 3.957 12 C -0.166 4.166 13 C -0.099 4.099 14 C -0.193 4.193 15 C -0.071 4.071 16 N -0.225 5.225 17 C -0.056 4.056 18 S 2.788 3.212 19 O -0.961 6.961 20 O -0.994 6.994 21 C -0.716 4.716 22 C -0.117 4.117 23 C -0.109 4.109 24 C -0.170 4.170 25 C 0.081 3.919 26 N -0.411 5.411 27 C -0.135 4.135 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.115 0.885 32 H 0.126 0.874 33 H 0.172 0.828 34 H 0.186 0.814 35 H 0.201 0.799 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.185 0.815 39 H 0.177 0.823 40 H 0.230 0.770 41 H 0.242 0.758 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.508 -8.539 1.257 15.197 hybrid contribution 0.604 1.837 0.904 2.134 sum 13.111 -6.702 2.161 14.883 Atomic orbital electron populations 1.70061 1.07565 1.27920 1.51085 1.25709 0.95405 1.02452 0.94831 0.85686 0.78363 0.78978 0.79140 1.19312 1.21439 1.19298 1.21737 0.93821 0.91080 1.50825 0.91303 1.18750 0.87362 0.82714 0.97241 1.57282 1.56953 1.48062 1.19260 1.20167 0.94332 0.95866 0.85322 1.21408 0.99859 0.96122 0.99251 1.22067 0.98824 0.92423 0.96541 1.22516 0.96056 1.02553 0.98149 1.23344 0.97036 0.91633 0.95049 1.67703 1.25353 1.04633 1.24801 1.22751 0.90357 0.99437 0.93043 1.01482 0.73710 0.73424 0.72582 1.93458 1.83265 1.35276 1.84122 1.93491 1.55972 1.86237 1.63656 1.30470 1.17338 1.11860 1.11969 1.20941 0.90351 1.00349 1.00038 1.21402 0.99656 0.94167 0.95656 1.21255 0.95261 0.99355 1.01177 1.17986 0.93822 0.88634 0.91493 1.42420 1.11854 1.32121 1.54749 1.20290 0.98415 0.95602 0.99181 0.92670 0.95551 0.96648 0.88484 0.87373 0.82807 0.81447 0.79917 0.83550 0.83227 0.81459 0.82337 0.76982 0.75797 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.54 13.29 21.45 0.28 -53.26 16 2 C 0.02 0.84 5.46 84.65 0.46 1.30 16 3 Si 0.95 41.97 29.54 68.60 2.03 43.99 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -27.68 9.38 25.60 0.24 -27.44 16 8 H 0.07 3.42 7.81 -2.91 -0.02 3.39 16 9 C 0.26 13.18 5.43 85.63 0.47 13.64 16 10 N -0.98 -39.72 2.75 -523.91 -1.44 -41.16 16 11 C 0.17 5.57 5.50 85.63 0.47 6.04 16 12 C -0.16 -5.35 5.48 -19.77 -0.11 -5.46 16 13 C -0.07 -2.10 9.43 22.47 0.21 -1.88 16 14 C -0.17 -4.26 10.11 22.36 0.23 -4.03 16 15 C 0.09 2.29 11.18 84.69 0.95 3.24 16 16 N -0.52 -17.40 10.36 -195.84 -2.03 -19.43 16 17 C 0.10 3.54 10.55 84.67 0.89 4.44 16 18 S 2.69 107.25 5.65 -56.49 -0.32 106.93 16 19 O -0.97 -35.60 14.48 -128.00 -1.85 -37.46 16 20 O -1.00 -48.61 15.83 -128.00 -2.03 -50.64 16 21 C -0.63 -22.16 5.97 22.25 0.13 -22.03 16 22 C -0.10 -2.65 9.52 22.29 0.21 -2.44 16 23 C -0.09 -1.98 10.04 22.25 0.22 -1.76 16 24 C -0.15 -3.36 9.90 22.40 0.22 -3.14 16 25 C 0.19 5.41 6.75 38.21 0.26 5.67 16 26 N -0.87 -20.03 9.09 -51.38 -0.47 -20.49 16 27 C -0.11 -4.04 9.37 22.40 0.21 -3.83 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.03 1.39 7.64 -2.39 -0.02 1.37 16 30 H 0.02 0.89 6.92 -2.39 -0.02 0.87 16 31 H 0.10 3.15 8.06 -2.39 -0.02 3.13 16 32 H 0.11 2.88 7.56 -2.38 -0.02 2.86 16 33 H 0.15 4.24 6.72 -2.91 -0.02 4.22 16 34 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.18 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.15 5.30 7.90 -2.91 -0.02 5.28 16 37 H 0.15 3.50 7.61 -2.91 -0.02 3.47 16 38 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 40 H 0.40 9.35 8.84 -92.70 -0.82 8.53 16 41 H 0.41 6.55 8.84 -92.71 -0.82 5.73 16 42 H 0.11 4.60 7.62 -2.91 -0.02 4.57 16 Total: -1.00 -73.12 372.45 -1.32 -74.44 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.56 Total: 34.75 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 5.07 Total: -37.69 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -3.65 Total: -134.34 kcal Atomic # 8 Polarization: -84.21 SS G_CDS: -3.88 Total: -88.09 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: 107.25 SS G_CDS: -0.32 Total: 106.93 kcal Total: -73.12 -1.32 -74.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314128924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.540 kcal (2) G-P(sol) polarization free energy of solvation -73.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds