Wall clock time and date at job start Wed Apr 1 2020 04:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37762 * 119.99508 * 2 1 4 4 C 1.38946 * 120.70265 * 179.97438 * 3 2 1 5 5 F 1.35094 * 119.88466 * 180.02562 * 4 3 2 6 6 C 1.37965 * 120.23097 * 0.02562 * 4 3 2 7 7 C 1.39458 * 119.58808 * 359.97438 * 6 4 3 8 8 C 1.47481 * 121.12500 * 179.97438 * 7 6 4 9 9 O 1.21866 * 121.40629 * 0.02562 * 8 7 6 10 10 C 1.47123 * 117.18632 * 180.02562 * 8 7 6 11 11 C 1.47136 * 120.54863 * 179.97438 * 10 8 7 12 12 O 1.21641 * 120.00020 * 0.02562 * 11 10 8 13 13 N 1.34774 * 119.99790 * 180.02562 * 11 10 8 14 14 C 1.46506 * 120.00072 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47289 * 179.97438 * 14 13 11 16 16 O 1.21285 * 119.99571 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99773 * 179.97438 * 15 14 13 18 18 C 1.37091 * 119.99763 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00286 * 0.02562 * 18 17 15 20 20 C 1.38956 * 120.00028 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47454 * 59.99812 * 22 20 18 24 24 H 1.48496 * 109.47302 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47261 * 299.99805 * 22 20 18 26 26 C 1.37958 * 118.90058 * 0.25620 * 10 8 7 27 27 N 1.33923 * 122.21102 * 359.48690 * 26 10 8 28 28 H 0.97000 * 118.60102 * 180.28114 * 27 26 10 29 29 C 1.37875 * 122.80039 * 0.50779 * 27 26 10 30 30 H 1.08995 * 109.46703 * 89.99961 * 1 2 3 31 31 H 1.08992 * 109.47202 * 210.00149 * 1 2 3 32 32 H 1.09000 * 109.46846 * 330.00244 * 1 2 3 33 33 H 1.07995 * 119.64841 * 359.97438 * 3 2 1 34 34 H 1.07995 * 120.20251 * 180.02562 * 6 4 3 35 35 H 0.97001 * 120.00676 * 359.97438 * 13 11 10 36 36 H 1.09001 * 109.47060 * 300.00359 * 14 13 11 37 37 H 1.09004 * 109.47073 * 59.99848 * 14 13 11 38 38 H 0.96998 * 120.00166 * 0.02562 * 17 15 14 39 39 H 0.96996 * 120.00054 * 180.02562 * 21 20 18 40 40 H 1.08002 * 118.89368 * 179.72752 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1931 0.0000 4 6 3.5851 1.2103 0.0005 5 9 4.2437 2.3898 0.0010 6 6 4.2944 0.0269 0.0005 7 6 3.6082 -1.1872 0.0005 8 6 4.3323 -2.4720 0.0000 9 8 5.5502 -2.5147 0.0000 10 6 3.5221 -3.7001 -0.0005 11 6 4.1680 -5.0221 -0.0017 12 8 5.3815 -5.1061 -0.0017 13 7 3.4151 -6.1399 -0.0027 14 6 4.0582 -7.4563 -0.0032 15 6 3.0021 -8.5314 -0.0037 16 8 1.8278 -8.2278 -0.0040 17 7 3.3625 -9.8300 -0.0048 18 6 2.4018 -10.8080 -0.0047 19 1 1.3562 -10.5378 -0.0041 20 6 2.7733 -12.1470 -0.0052 21 7 4.0457 -12.4758 -0.0054 22 14 1.4643 -13.4795 -0.0058 23 1 0.6179 -13.3416 -1.2182 24 1 2.1161 -14.8138 -0.0070 25 1 0.6180 -13.3426 1.2068 26 6 2.1468 -3.5916 -0.0059 27 7 1.5243 -2.4059 -0.0005 28 1 0.5544 -2.3907 -0.0005 29 6 2.2032 -1.2059 0.0005 30 1 -0.3632 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6500 2.1250 -0.0004 34 1 5.3743 0.0408 0.0014 35 1 2.4474 -6.0730 -0.0023 36 1 4.6798 -7.5566 -0.8930 37 1 4.6791 -7.5578 0.8869 38 1 4.3016 -10.0727 -0.0049 39 1 4.3050 -13.4104 -0.0062 40 1 1.5522 -4.4932 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345131513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:27 Heat of formation + Delta-G solvation = -135.958371 kcal Electronic energy + Delta-G solvation = -28609.990572 eV Core-core repulsion = 24110.121701 eV Total energy + Delta-G solvation = -4499.868871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.99100 -42.37742 -40.85758 -39.89106 -39.08442 -38.26571 -36.21310 -35.28771 -34.32109 -33.36523 -32.44723 -31.21886 -29.18631 -28.27043 -26.61543 -25.31667 -24.91524 -22.85583 -21.90212 -21.39402 -20.25049 -19.89885 -19.80546 -19.06548 -18.21677 -17.45290 -17.24764 -16.99358 -16.95855 -16.68586 -16.46568 -16.36584 -16.11837 -15.97959 -15.71025 -15.23756 -15.23353 -14.73347 -14.71148 -14.50456 -14.37090 -13.92991 -13.91317 -13.61965 -13.54773 -13.51370 -12.94487 -12.86897 -12.57923 -12.47898 -12.44175 -12.12556 -11.52883 -11.32667 -10.63257 -10.51449 -10.43272 -10.19173 -10.15113 -10.05756 -8.89748 -8.48308 -5.98742 -0.57500 -0.53400 0.39184 1.39010 1.40809 1.44750 1.55936 1.60533 1.92270 1.95079 2.15099 2.32540 2.71726 2.81927 3.13940 3.14288 3.19053 3.30289 3.56178 3.61740 3.73556 3.89510 4.12192 4.24640 4.29810 4.37465 4.45451 4.49720 4.52989 4.55405 4.81854 4.83160 5.01389 5.08804 5.23815 5.28154 5.38287 5.40604 5.64946 5.93759 5.96919 6.48402 6.59326 6.71451 7.04872 7.27360 7.47089 7.94924 8.68371 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.024972 B = 0.001954 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.983894 B =14328.448763 C =15428.986037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 C -0.087 4.087 4 C 0.071 3.929 5 F -0.140 7.140 6 C -0.097 4.097 7 C -0.167 4.167 8 C 0.419 3.581 9 O -0.513 6.513 10 C -0.373 4.373 11 C 0.575 3.425 12 O -0.579 6.579 13 N -0.704 5.704 14 C 0.122 3.878 15 C 0.438 3.562 16 O -0.618 6.618 17 N -0.561 5.561 18 C -0.335 4.335 19 H 0.092 0.908 20 C -0.015 4.015 21 N -0.919 5.919 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.268 1.268 26 C 0.269 3.731 27 N -0.560 5.560 28 H 0.448 0.552 29 C 0.167 3.833 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.182 0.818 34 H 0.132 0.868 35 H 0.413 0.587 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.397 0.603 39 H 0.279 0.721 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.756 27.749 -0.035 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.080 4.080 3 C -0.106 4.106 4 C 0.052 3.948 5 F -0.119 7.119 6 C -0.117 4.117 7 C -0.171 4.171 8 C 0.305 3.695 9 O -0.394 6.394 10 C -0.385 4.385 11 C 0.365 3.635 12 O -0.459 6.459 13 N -0.360 5.360 14 C -0.006 4.006 15 C 0.225 3.775 16 O -0.506 6.506 17 N -0.196 5.196 18 C -0.464 4.464 19 H 0.110 0.890 20 C -0.215 4.215 21 N -0.559 5.559 22 Si 0.822 3.178 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.193 1.193 26 C 0.131 3.869 27 N -0.170 5.170 28 H 0.293 0.707 29 C 0.065 3.935 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.199 0.801 34 H 0.150 0.850 35 H 0.253 0.747 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -12.900 27.740 -0.032 30.593 hybrid contribution 0.445 -0.938 0.004 1.038 sum -12.455 26.802 -0.028 29.555 Atomic orbital electron populations 1.21010 0.85830 1.05737 1.05099 1.19723 0.98664 0.88467 1.01140 1.21377 0.90788 1.00662 0.97810 1.17612 0.91278 0.80172 1.05787 1.91515 1.81453 1.44786 1.94149 1.20995 1.01339 0.90372 0.98981 1.19873 0.92889 0.94410 1.09953 1.19850 0.88180 0.87866 0.73638 1.90724 1.16578 1.89174 1.42965 1.21399 0.93992 0.93550 1.29576 1.17776 0.86239 0.83756 0.75773 1.90814 1.15599 1.87505 1.52030 1.45426 1.11046 1.03739 1.75807 1.20735 0.94072 0.81908 1.03923 1.20245 0.89752 0.83949 0.83535 1.90425 1.19838 1.82294 1.58040 1.41869 1.09924 1.04429 1.63402 1.19738 0.90345 0.86093 1.50243 0.89033 1.26190 0.99232 1.00187 0.95884 1.69690 1.16725 1.20083 1.49354 0.84892 0.77382 0.76301 0.79200 1.19295 1.20073 1.19285 1.22431 0.92534 0.90329 0.81616 1.40994 1.12139 1.01757 1.62063 0.70710 1.17772 0.89628 0.86931 0.99130 0.88174 0.89479 0.88123 0.80057 0.84973 0.74715 0.89320 0.89337 0.76871 0.91174 0.77301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.31 9.56 71.24 0.68 1.00 16 2 C -0.08 -0.48 5.90 -19.74 -0.12 -0.59 16 3 C -0.09 -0.71 9.64 22.33 0.22 -0.50 16 4 C 0.07 1.15 7.29 22.37 0.16 1.31 16 5 F -0.14 -2.52 17.26 44.97 0.78 -1.74 16 6 C -0.10 -2.14 9.63 22.50 0.22 -1.92 16 7 C -0.17 -3.78 5.89 -19.99 -0.12 -3.89 16 8 C 0.42 13.55 7.15 27.04 0.19 13.75 16 9 O -0.51 -22.01 15.85 14.37 0.23 -21.78 16 10 C -0.37 -10.29 6.04 -18.67 -0.11 -10.40 16 11 C 0.57 20.65 7.76 86.58 0.67 21.33 16 12 O -0.58 -27.01 15.55 15.09 0.23 -26.78 16 13 N -0.70 -22.90 5.48 -470.36 -2.58 -25.48 16 14 C 0.12 4.55 6.15 85.63 0.53 5.07 16 15 C 0.44 19.57 7.85 87.66 0.69 20.26 16 16 O -0.62 -29.47 15.24 -3.05 -0.05 -29.51 16 17 N -0.56 -27.79 5.29 -306.99 -1.62 -29.41 16 18 C -0.33 -17.98 9.68 84.04 0.81 -17.17 16 19 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 20 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 21 N -0.92 -48.84 13.05 21.66 0.28 -48.56 16 22 Si 1.00 40.88 29.55 68.60 2.03 42.91 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 26 C 0.27 3.67 10.65 84.31 0.90 4.57 16 27 N -0.56 -3.97 5.14 -186.86 -0.96 -4.93 16 28 H 0.45 -1.07 6.67 -92.71 -0.62 -1.69 16 29 C 0.17 2.07 6.64 38.99 0.26 2.33 16 30 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.09 -0.50 6.55 -2.39 -0.02 -0.51 16 32 H 0.10 -0.47 8.08 -2.39 -0.02 -0.49 16 33 H 0.18 0.26 8.06 -2.91 -0.02 0.23 16 34 H 0.13 3.35 7.78 -2.91 -0.02 3.33 16 35 H 0.41 11.27 5.44 -92.71 -0.50 10.77 16 36 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 38 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 39 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.21 1.49 6.31 -2.91 -0.02 1.47 16 Total: -1.00 -87.72 355.75 3.11 -84.61 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.68 Total: 25.81 kcal Atomic # 6 Polarization: 29.42 SS G_CDS: 5.45 Total: 34.86 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -4.88 Total: -108.38 kcal Atomic # 8 Polarization: -78.49 SS G_CDS: 0.42 Total: -78.07 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.74 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -87.72 3.11 -84.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345131513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.345 kcal (2) G-P(sol) polarization free energy of solvation -87.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds