Wall clock time and date at job start Wed Apr 1 2020 04:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39787 * 120.06579 * 113.63141 * 3 2 1 5 5 C 1.37706 * 119.96574 * 180.02562 * 4 3 2 6 6 C 1.39090 * 120.10622 * 359.97438 * 5 4 3 7 7 N 1.39450 * 119.93341 * 180.02562 * 6 5 4 8 8 C 1.34773 * 120.00071 * 335.11775 * 7 6 5 9 9 O 1.21376 * 119.99847 * 354.47271 * 8 7 6 10 10 C 1.49352 * 120.00020 * 174.47489 * 8 7 6 11 11 O 1.21354 * 120.00106 * 359.97438 * 10 8 7 12 12 N 1.34781 * 119.99774 * 179.97438 * 10 8 7 13 13 C 1.47418 * 125.64615 * 359.69742 * 12 10 8 14 14 C 1.54917 * 104.83193 * 156.13386 * 13 12 10 15 15 C 1.55162 * 101.58077 * 37.00496 * 14 13 12 16 16 O 1.42900 * 110.72225 * 82.86081 * 15 14 13 17 17 C 1.50701 * 110.87203 * 206.06894 * 15 14 13 18 18 H 1.08000 * 119.99498 * 355.05482 * 17 15 14 19 19 C 1.37877 * 119.99842 * 175.06501 * 17 15 14 20 20 N 1.31514 * 119.99905 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99799 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47241 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46960 * 119.99556 * 21 19 17 24 24 H 1.48492 * 109.47319 * 240.00266 * 21 19 17 25 25 C 1.47023 * 125.64365 * 179.97438 * 12 10 8 26 26 C 1.39338 * 120.13259 * 0.29125 * 6 5 4 27 27 F 1.35098 * 119.98366 * 179.72694 * 26 6 5 28 28 C 1.37893 * 120.03008 * 359.45831 * 26 6 5 29 29 H 1.07996 * 120.00863 * 0.03903 * 4 3 2 30 30 H 1.08004 * 119.94164 * 179.97438 * 5 4 3 31 31 H 0.97007 * 119.99951 * 155.11985 * 7 6 5 32 32 H 1.09010 * 110.36460 * 274.96786 * 13 12 10 33 33 H 1.08994 * 110.37406 * 37.29540 * 13 12 10 34 34 H 1.08993 * 110.99990 * 278.93387 * 14 13 12 35 35 H 1.08993 * 111.03673 * 155.09310 * 14 13 12 36 36 H 0.96695 * 113.99852 * 185.02299 * 16 15 14 37 37 H 0.97001 * 119.99738 * 180.02562 * 20 19 17 38 38 H 1.08997 * 109.88065 * 300.21217 * 25 12 10 39 39 H 1.09000 * 109.88117 * 61.22886 * 25 12 10 40 40 H 1.07998 * 120.05528 * 180.24805 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2681 0.4859 -1.1083 5 6 4.6451 0.4851 -1.1064 6 6 5.3409 0.0026 -0.0029 7 7 6.7354 0.0039 -0.0045 8 6 7.4080 -0.0209 -1.1722 9 8 6.8042 -0.1456 -2.2177 10 6 8.8961 0.1049 -1.1796 11 8 9.4998 0.2300 -0.1343 12 7 9.5687 0.0796 -2.3473 13 6 8.9648 -0.0725 -3.6835 14 6 9.9918 0.5581 -4.6570 15 6 11.3363 0.1329 -4.0096 16 8 11.6883 -1.1955 -4.4013 17 6 12.4344 1.1010 -4.3676 18 1 12.2400 1.9054 -5.0615 19 6 13.6871 0.9596 -3.8093 20 7 13.9235 -0.0198 -2.9640 21 14 15.0484 2.1592 -4.2535 22 1 14.5291 3.1623 -5.2176 23 1 15.5190 2.8503 -3.0263 24 1 16.1789 1.4191 -4.8693 25 6 11.0267 0.1932 -2.4989 26 6 4.6474 -0.4873 1.1019 27 9 5.3263 -0.9603 2.1699 28 6 3.2685 -0.4843 1.1080 29 1 2.7291 0.8614 -1.9656 30 1 5.1857 0.8597 -1.9631 31 1 7.2214 0.0227 0.8348 32 1 8.8196 -1.1275 -3.9164 33 1 8.0163 0.4621 -3.7343 34 1 9.8944 1.6435 -4.6782 35 1 9.8903 0.1391 -5.6580 36 1 12.4802 -1.5376 -3.9644 37 1 14.8048 -0.1190 -2.5709 38 1 11.3692 1.1428 -2.0878 39 1 11.5184 -0.6324 -1.9844 40 1 2.7305 -0.8601 1.9657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592303007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:54 Heat of formation + Delta-G solvation = -86.593459 kcal Electronic energy + Delta-G solvation = -29405.451253 eV Core-core repulsion = 24907.723005 eV Total energy + Delta-G solvation = -4497.728248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.37101 -41.28675 -39.72375 -38.62457 -37.45119 -36.86345 -35.40253 -34.31040 -32.32832 -31.37004 -30.63205 -30.30941 -28.07723 -26.38644 -25.02997 -23.64877 -23.33559 -22.00775 -20.21887 -19.74176 -19.63945 -18.37898 -17.55868 -17.27561 -16.88343 -16.58035 -16.35245 -16.09068 -15.90089 -15.36433 -14.93869 -14.71742 -14.56516 -14.34621 -14.31167 -14.11564 -13.80794 -13.24324 -13.10853 -13.05454 -13.00887 -12.71483 -12.65376 -12.54946 -12.18315 -11.83329 -11.63594 -11.25653 -11.15184 -11.00441 -10.89627 -10.70657 -10.53419 -10.27375 -9.56200 -9.45065 -9.32180 -8.77156 -8.65416 -8.44660 -8.20865 -6.38494 -4.47119 0.03864 0.61777 1.37615 2.09457 2.22476 2.42388 3.14459 3.19363 3.24017 3.27091 3.28474 3.34696 3.48570 3.69959 4.16484 4.20260 4.33921 4.41092 4.62420 4.89652 4.90356 5.16702 5.34826 5.41557 5.51472 5.66771 5.69073 5.71794 5.76821 5.91202 6.11756 6.27341 6.38053 6.56278 6.66198 6.68930 6.71473 7.04630 7.07811 7.19747 7.40320 7.63149 7.76761 7.90885 8.14073 8.57411 9.18957 9.28296 10.69393 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.002233 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.882957 B =12534.589833 C =13113.338234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.259 3.741 3 C -0.027 4.027 4 C -0.051 4.051 5 C -0.111 4.111 6 C 0.158 3.842 7 N -0.646 5.646 8 C 0.516 3.484 9 O -0.486 6.486 10 C 0.508 3.492 11 O -0.530 6.530 12 N -0.570 5.570 13 C 0.096 3.904 14 C -0.120 4.120 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.537 4.537 18 H 0.069 0.931 19 C 0.070 3.930 20 N -0.895 5.895 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.100 3.900 26 C 0.068 3.932 27 F -0.128 7.128 28 C -0.081 4.081 29 H 0.146 0.854 30 H 0.168 0.832 31 H 0.430 0.570 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.383 0.617 37 H 0.271 0.729 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.559 0.300 5.777 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.057 4.057 3 C -0.031 4.031 4 C -0.072 4.072 5 C -0.131 4.131 6 C 0.059 3.941 7 N -0.291 5.291 8 C 0.300 3.700 9 O -0.359 6.359 10 C 0.289 3.711 11 O -0.409 6.409 12 N -0.302 5.302 13 C -0.026 4.026 14 C -0.158 4.158 15 C 0.207 3.793 16 O -0.392 6.392 17 C -0.575 4.575 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.021 4.021 26 C 0.046 3.954 27 F -0.106 7.106 28 C -0.103 4.103 29 H 0.164 0.836 30 H 0.185 0.815 31 H 0.269 0.731 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.233 0.767 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.693 0.258 5.376 19.452 hybrid contribution 2.151 0.353 1.004 2.400 sum -16.541 0.612 6.379 17.739 Atomic orbital electron populations 1.81290 1.11906 1.08453 1.07191 1.25453 0.92332 0.93855 0.94018 1.15678 0.84595 1.06634 0.96230 1.21171 0.93438 0.95839 0.96731 1.21360 0.93616 0.99309 0.98800 1.18067 0.83232 0.97645 0.95124 1.43160 1.04040 1.70669 1.11259 1.20778 0.89747 0.76257 0.83208 1.90688 1.69737 1.44484 1.30999 1.19138 0.86316 0.81242 0.84369 1.90776 1.68930 1.50429 1.30720 1.48747 1.10613 1.65346 1.05474 1.22709 0.97321 1.01563 0.81052 1.22819 0.94412 1.00228 0.98363 1.19534 0.91086 0.82197 0.86472 1.86132 1.50343 1.31752 1.70926 1.21530 0.94960 1.13435 1.27572 0.91285 1.25089 0.98915 0.95531 0.93807 1.69690 1.23375 1.30928 1.29336 0.86327 0.81285 0.80764 0.78436 1.19532 1.20755 1.20700 1.23334 0.74344 1.02612 1.01813 1.17040 0.89592 1.03121 0.85623 1.91551 1.79697 1.86102 1.53258 1.20882 0.91451 0.99146 0.98804 0.83624 0.81461 0.73092 0.91037 0.89471 0.90326 0.90148 0.76704 0.91941 0.90629 0.90776 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.47 18.54 41.84 0.78 -3.70 16 2 C 0.26 2.17 15.32 -22.48 -0.34 1.83 16 3 C -0.03 -0.18 5.74 -106.82 -0.61 -0.80 16 4 C -0.05 -0.33 9.74 -39.20 -0.38 -0.71 16 5 C -0.11 -0.93 8.69 -39.46 -0.34 -1.27 16 6 C 0.16 1.49 6.43 -83.67 -0.54 0.95 16 7 N -0.65 -7.16 5.27 -10.23 -0.05 -7.22 16 8 C 0.52 7.10 7.65 -11.63 -0.09 7.02 16 9 O -0.49 -6.75 10.92 5.47 0.06 -6.69 16 10 C 0.51 8.85 7.91 -11.63 -0.09 8.75 16 11 O -0.53 -10.34 16.81 5.49 0.09 -10.25 16 12 N -0.57 -10.73 3.33 -171.06 -0.57 -11.30 16 13 C 0.10 1.62 6.05 -2.53 -0.02 1.60 16 14 C -0.12 -2.24 6.23 -24.58 -0.15 -2.39 16 15 C 0.25 5.59 0.85 -89.93 -0.08 5.51 16 16 O -0.58 -13.79 13.08 -35.23 -0.46 -14.25 16 17 C -0.54 -13.23 8.13 -34.44 -0.28 -13.51 16 18 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 19 C 0.07 1.73 5.28 -17.82 -0.09 1.64 16 20 N -0.89 -22.55 10.96 55.43 0.61 -21.95 16 21 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.10 2.20 5.23 -3.06 -0.02 2.19 16 26 C 0.07 0.57 7.30 -39.30 -0.29 0.28 16 27 F -0.13 -1.17 16.80 2.25 0.04 -1.13 16 28 C -0.08 -0.53 9.72 -39.14 -0.38 -0.91 16 29 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.17 1.55 5.77 -52.48 -0.30 1.24 16 31 H 0.43 4.48 7.92 -40.82 -0.32 4.15 16 32 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16 33 H 0.09 1.30 6.15 -51.93 -0.32 0.98 16 34 H 0.08 1.39 8.04 -51.93 -0.42 0.98 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.38 9.26 7.45 45.56 0.34 9.60 16 37 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 38 H 0.08 1.81 7.81 -51.93 -0.41 1.40 16 39 H 0.07 1.78 7.92 -51.93 -0.41 1.37 16 40 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -27.74 356.41 -5.94 -33.68 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -3.08 Total: 12.72 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -3.70 Total: 10.17 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.76 Total: -44.16 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.31 Total: -31.19 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.74 -5.94 -33.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592303007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.909 kcal (2) G-P(sol) polarization free energy of solvation -27.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds