Wall clock time and date at job start Wed Apr 1 2020 04:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39787 * 120.06579 * 113.63141 * 3 2 1 5 5 C 1.37706 * 119.96574 * 180.02562 * 4 3 2 6 6 C 1.39090 * 120.10622 * 359.97438 * 5 4 3 7 7 N 1.39450 * 119.93341 * 180.02562 * 6 5 4 8 8 C 1.34773 * 120.00071 * 335.11775 * 7 6 5 9 9 O 1.21376 * 119.99847 * 354.47271 * 8 7 6 10 10 C 1.49352 * 120.00020 * 174.47489 * 8 7 6 11 11 O 1.21354 * 120.00106 * 359.97438 * 10 8 7 12 12 N 1.34781 * 119.99774 * 179.97438 * 10 8 7 13 13 C 1.47418 * 125.64615 * 359.69742 * 12 10 8 14 14 C 1.54917 * 104.83193 * 156.13386 * 13 12 10 15 15 C 1.55162 * 101.58077 * 37.00496 * 14 13 12 16 16 O 1.42900 * 110.72225 * 82.86081 * 15 14 13 17 17 C 1.50701 * 110.87203 * 206.06894 * 15 14 13 18 18 H 1.08000 * 119.99498 * 355.05482 * 17 15 14 19 19 C 1.37877 * 119.99842 * 175.06501 * 17 15 14 20 20 N 1.31514 * 119.99905 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99799 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47241 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46960 * 119.99556 * 21 19 17 24 24 H 1.48492 * 109.47319 * 240.00266 * 21 19 17 25 25 C 1.47023 * 125.64365 * 179.97438 * 12 10 8 26 26 C 1.39338 * 120.13259 * 0.29125 * 6 5 4 27 27 F 1.35098 * 119.98366 * 179.72694 * 26 6 5 28 28 C 1.37893 * 120.03008 * 359.45831 * 26 6 5 29 29 H 1.07996 * 120.00863 * 0.03903 * 4 3 2 30 30 H 1.08004 * 119.94164 * 179.97438 * 5 4 3 31 31 H 0.97007 * 119.99951 * 155.11985 * 7 6 5 32 32 H 1.09010 * 110.36460 * 274.96786 * 13 12 10 33 33 H 1.08994 * 110.37406 * 37.29540 * 13 12 10 34 34 H 1.08993 * 110.99990 * 278.93387 * 14 13 12 35 35 H 1.08993 * 111.03673 * 155.09310 * 14 13 12 36 36 H 0.96695 * 113.99852 * 185.02299 * 16 15 14 37 37 H 0.97001 * 119.99738 * 180.02562 * 20 19 17 38 38 H 1.08997 * 109.88065 * 300.21217 * 25 12 10 39 39 H 1.09000 * 109.88117 * 61.22886 * 25 12 10 40 40 H 1.07998 * 120.05528 * 180.24805 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2681 0.4859 -1.1083 5 6 4.6451 0.4851 -1.1064 6 6 5.3409 0.0026 -0.0029 7 7 6.7354 0.0039 -0.0045 8 6 7.4080 -0.0209 -1.1722 9 8 6.8042 -0.1456 -2.2177 10 6 8.8961 0.1049 -1.1796 11 8 9.4998 0.2300 -0.1343 12 7 9.5687 0.0796 -2.3473 13 6 8.9648 -0.0725 -3.6835 14 6 9.9918 0.5581 -4.6570 15 6 11.3363 0.1329 -4.0096 16 8 11.6883 -1.1955 -4.4013 17 6 12.4344 1.1010 -4.3676 18 1 12.2400 1.9054 -5.0615 19 6 13.6871 0.9596 -3.8093 20 7 13.9235 -0.0198 -2.9640 21 14 15.0484 2.1592 -4.2535 22 1 14.5291 3.1623 -5.2176 23 1 15.5190 2.8503 -3.0263 24 1 16.1789 1.4191 -4.8693 25 6 11.0267 0.1932 -2.4989 26 6 4.6474 -0.4873 1.1019 27 9 5.3263 -0.9603 2.1699 28 6 3.2685 -0.4843 1.1080 29 1 2.7291 0.8614 -1.9656 30 1 5.1857 0.8597 -1.9631 31 1 7.2214 0.0227 0.8348 32 1 8.8196 -1.1275 -3.9164 33 1 8.0163 0.4621 -3.7343 34 1 9.8944 1.6435 -4.6782 35 1 9.8903 0.1391 -5.6580 36 1 12.4802 -1.5376 -3.9644 37 1 14.8048 -0.1190 -2.5709 38 1 11.3692 1.1428 -2.0878 39 1 11.5184 -0.6324 -1.9844 40 1 2.7305 -0.8601 1.9657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592303007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:53 Heat of formation + Delta-G solvation = -105.350840 kcal Electronic energy + Delta-G solvation = -29406.264634 eV Core-core repulsion = 24907.723005 eV Total energy + Delta-G solvation = -4498.541629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.04544 -42.35417 -40.81912 -39.70881 -38.98332 -37.66380 -36.50621 -35.76557 -34.22804 -32.02380 -31.86979 -31.35914 -29.72280 -27.85724 -26.30395 -24.73196 -24.15595 -23.23131 -21.55942 -21.14106 -20.39482 -19.42492 -19.08671 -18.62408 -17.85785 -17.59238 -17.40900 -17.14205 -16.92244 -16.76431 -16.28239 -16.09890 -15.82061 -15.12470 -15.04939 -14.99505 -14.80945 -14.77363 -14.65000 -14.48452 -14.05630 -13.78672 -13.54554 -13.47622 -13.43674 -13.28696 -12.90318 -12.85354 -12.53907 -12.44874 -12.34555 -12.23636 -12.05934 -11.77526 -11.18319 -10.78814 -10.57764 -10.29443 -10.04521 -9.78932 -9.38335 -8.26479 -6.41463 -0.67543 0.03519 0.24390 0.97598 1.42018 1.46376 1.55523 1.56025 1.67961 2.01899 2.25958 2.40108 2.62641 2.68063 3.00195 3.05249 3.06160 3.62095 3.80292 3.87704 3.97271 4.05541 4.15079 4.19810 4.38688 4.54666 4.62930 4.71790 4.82093 4.92798 4.96948 5.03802 5.08374 5.12473 5.14752 5.34402 5.46457 5.59925 5.71235 5.74255 6.04941 6.26865 6.38637 6.41064 6.66018 6.73606 7.28186 7.36113 8.79832 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.002233 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.882957 B =12534.589833 C =13113.338234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.285 3.715 3 C -0.020 4.020 4 C -0.034 4.034 5 C -0.114 4.114 6 C 0.140 3.860 7 N -0.636 5.636 8 C 0.530 3.470 9 O -0.486 6.486 10 C 0.505 3.495 11 O -0.556 6.556 12 N -0.579 5.579 13 C 0.105 3.895 14 C -0.115 4.115 15 C 0.232 3.768 16 O -0.587 6.587 17 C -0.554 4.554 18 H 0.068 0.932 19 C 0.027 3.973 20 N -0.914 5.914 21 Si 0.961 3.039 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.280 1.280 25 C 0.118 3.882 26 C 0.066 3.934 27 F -0.134 7.134 28 C -0.067 4.067 29 H 0.170 0.830 30 H 0.163 0.837 31 H 0.432 0.568 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.376 0.624 37 H 0.270 0.730 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.654 0.818 5.498 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.030 4.030 3 C -0.024 4.024 4 C -0.055 4.055 5 C -0.134 4.134 6 C 0.043 3.957 7 N -0.281 5.281 8 C 0.312 3.688 9 O -0.360 6.360 10 C 0.288 3.712 11 O -0.436 6.436 12 N -0.311 5.311 13 C -0.016 4.016 14 C -0.152 4.152 15 C 0.192 3.808 16 O -0.395 6.395 17 C -0.592 4.592 18 H 0.086 0.914 19 C -0.174 4.174 20 N -0.553 5.553 21 Si 0.787 3.213 22 H -0.190 1.190 23 H -0.209 1.209 24 H -0.206 1.206 25 C -0.005 4.005 26 C 0.044 3.956 27 F -0.112 7.112 28 C -0.088 4.088 29 H 0.188 0.812 30 H 0.180 0.820 31 H 0.272 0.728 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -20.844 0.777 5.103 21.473 hybrid contribution 2.730 0.185 1.162 2.973 sum -18.114 0.963 6.265 19.191 Atomic orbital electron populations 1.81334 1.13173 1.09924 1.08561 1.25464 0.92220 0.92580 0.92743 1.15648 0.83737 1.06580 0.96469 1.21358 0.92641 0.94360 0.97179 1.21332 0.94269 0.99514 0.98266 1.18246 0.82058 0.99192 0.96253 1.42961 1.04977 1.69866 1.10288 1.19820 0.87674 0.77178 0.84137 1.90686 1.69008 1.45133 1.31128 1.19825 0.88197 0.79794 0.83379 1.90754 1.70192 1.51080 1.31575 1.48727 1.09345 1.66174 1.06863 1.22745 0.97588 1.01851 0.79398 1.22824 0.92390 1.00966 0.99066 1.19749 0.92617 0.81352 0.87125 1.86123 1.49971 1.32415 1.70968 1.21834 0.95918 1.13882 1.27575 0.91356 1.25773 1.00872 0.96904 0.93823 1.69786 1.23640 1.31992 1.29919 0.85446 0.78814 0.79008 0.78015 1.18952 1.20916 1.20616 1.22787 0.76574 0.99888 1.01214 1.17073 0.90027 1.03355 0.85130 1.91541 1.79943 1.86242 1.53519 1.21054 0.90693 0.97812 0.99281 0.81215 0.82013 0.72847 0.90953 0.86822 0.89412 0.89080 0.77466 0.92024 0.93274 0.93684 0.81022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.96 18.54 19.00 0.35 -8.61 16 2 C 0.28 4.00 15.32 88.33 1.35 5.36 16 3 C -0.02 -0.21 5.74 -21.29 -0.12 -0.33 16 4 C -0.03 -0.33 9.74 22.52 0.22 -0.11 16 5 C -0.11 -1.61 8.69 22.35 0.19 -1.42 16 6 C 0.14 2.34 6.43 38.40 0.25 2.59 16 7 N -0.64 -13.30 5.27 -304.62 -1.61 -14.91 16 8 C 0.53 13.93 7.65 87.24 0.67 14.59 16 9 O -0.49 -12.48 10.92 -3.33 -0.04 -12.52 16 10 C 0.51 17.57 7.91 87.24 0.69 18.26 16 11 O -0.56 -22.14 16.81 -3.26 -0.05 -22.19 16 12 N -0.58 -21.86 3.33 -813.47 -2.71 -24.57 16 13 C 0.11 3.42 6.05 86.86 0.53 3.95 16 14 C -0.11 -4.16 6.23 31.99 0.20 -3.96 16 15 C 0.23 10.60 0.85 -10.35 -0.01 10.59 16 16 O -0.59 -28.26 13.08 -148.98 -1.95 -30.21 16 17 C -0.55 -27.58 8.13 25.60 0.21 -27.37 16 18 H 0.07 3.33 7.78 -2.91 -0.02 3.30 16 19 C 0.03 1.37 5.28 84.65 0.45 1.82 16 20 N -0.91 -47.31 10.96 21.45 0.24 -47.08 16 21 Si 0.96 40.37 29.54 68.60 2.03 42.39 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 25 C 0.12 5.38 5.23 86.73 0.45 5.84 16 26 C 0.07 0.94 7.30 22.45 0.16 1.10 16 27 F -0.13 -2.22 16.80 44.97 0.76 -1.46 16 28 C -0.07 -0.67 9.72 22.56 0.22 -0.45 16 29 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 30 H 0.16 2.57 5.77 -2.91 -0.02 2.56 16 31 H 0.43 8.68 7.92 -92.70 -0.73 7.95 16 32 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.11 3.11 6.15 -2.39 -0.01 3.10 16 34 H 0.09 3.00 8.04 -2.39 -0.02 2.98 16 35 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.38 18.84 7.45 -74.06 -0.55 18.29 16 37 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 38 H 0.05 2.46 7.81 -2.39 -0.02 2.44 16 39 H 0.04 2.28 7.92 -2.39 -0.02 2.26 16 40 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -60.52 356.41 2.34 -58.18 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -0.13 Total: 30.52 kcal Atomic # 6 Polarization: 25.00 SS G_CDS: 5.46 Total: 30.46 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -3.72 Total: -95.16 kcal Atomic # 8 Polarization: -62.88 SS G_CDS: -2.04 Total: -64.92 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.76 Total: -1.46 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.39 kcal Total: -60.52 2.34 -58.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592303007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.173 kcal (2) G-P(sol) polarization free energy of solvation -60.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds