Wall clock time and date at job start Wed Apr 1 2020 04:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48497 * 109.46957 * 240.00251 * 3 2 1 5 5 H 1.48494 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47157 * 120.00230 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 197.25961 * 7 2 1 9 9 N 1.36937 * 119.99269 * 17.25596 * 7 2 1 10 10 C 1.46928 * 120.62751 * 207.39032 * 9 7 2 11 11 C 1.53184 * 108.89946 * 233.68087 * 10 9 7 12 12 C 1.53045 * 109.31045 * 305.29664 * 11 10 9 13 13 N 1.46500 * 109.45772 * 181.38140 * 12 11 10 14 14 C 1.34777 * 119.99730 * 154.99987 * 13 12 11 15 15 O 1.21613 * 119.99900 * 0.02562 * 14 13 12 16 16 C 1.47300 * 120.00154 * 180.02562 * 14 13 12 17 17 C 1.34217 * 124.79091 * 179.72409 * 16 14 13 18 18 C 1.39573 * 115.53052 * 179.85214 * 17 16 14 19 19 C 1.47749 * 129.59301 * 180.21015 * 18 17 16 20 20 C 1.34062 * 119.55582 * 180.25866 * 19 18 17 21 21 N 1.36551 * 121.42294 * 359.97438 * 20 19 18 22 22 H 0.96996 * 119.15839 * 180.02562 * 21 20 19 23 23 C 1.34304 * 121.67988 * 0.02562 * 21 20 19 24 24 O 1.21951 * 119.68966 * 180.02562 * 23 21 20 25 25 C 1.39391 * 112.90035 * 0.42063 * 18 17 16 26 26 S 1.75558 * 124.78939 * 0.02562 * 16 14 13 27 27 C 1.53036 * 109.53839 * 61.36417 * 12 11 10 28 28 C 1.47200 * 120.81872 * 27.54201 * 9 7 2 29 29 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58457 * 113.81908 * 10 9 7 31 31 H 1.09001 * 109.58548 * 353.54535 * 10 9 7 32 32 H 1.09004 * 109.49587 * 65.24382 * 11 10 9 33 33 H 1.09000 * 109.49989 * 185.34836 * 11 10 9 34 34 H 1.08993 * 109.45838 * 301.34309 * 12 11 10 35 35 H 0.96999 * 120.00683 * 335.00295 * 13 12 11 36 36 H 1.08003 * 122.23217 * 0.03044 * 17 16 14 37 37 H 1.08005 * 120.22322 * 0.28326 * 19 18 17 38 38 H 1.08001 * 119.28634 * 179.97438 * 20 19 18 39 39 H 1.09007 * 109.49849 * 58.58654 * 27 12 11 40 40 H 1.09003 * 109.49941 * 178.65147 * 27 12 11 41 41 H 1.09001 * 109.53557 * 6.52997 * 28 9 7 42 42 H 1.09002 * 109.67524 * 246.22900 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0538 -1.2234 0.2769 9 7 1.3717 -2.3612 -0.3529 10 6 1.8234 -3.6553 0.1762 11 6 2.0756 -4.6095 -0.9953 12 6 0.8160 -4.6926 -1.8606 13 7 1.0425 -5.6298 -2.9636 14 6 -0.0023 -6.2527 -3.5440 15 8 -1.1332 -6.0363 -3.1523 16 6 0.2254 -7.1954 -4.6526 17 6 -0.7408 -7.8704 -5.2946 18 6 -0.3071 -8.7120 -6.3202 19 6 -1.0922 -9.5833 -7.2187 20 6 -0.4604 -10.3209 -8.1429 21 7 0.8983 -10.2858 -8.2747 22 1 1.3214 -10.8328 -8.9549 23 6 1.6637 -9.5132 -7.4867 24 8 2.8739 -9.5095 -7.6364 25 6 1.0772 -8.7002 -6.4825 26 16 1.7997 -7.6004 -5.3157 27 6 0.4915 -3.3083 -2.4264 28 6 0.2213 -2.3393 -1.2711 29 1 -0.4850 0.8401 0.0004 30 1 1.0553 -4.0719 0.8279 31 1 2.7458 -3.5175 0.7404 32 1 2.9055 -4.2369 -1.5959 33 1 2.3194 -5.6002 -0.6117 34 1 -0.0192 -5.0417 -1.2534 35 1 1.9445 -5.8022 -3.2762 36 1 -1.7845 -7.7670 -5.0368 37 1 -2.1680 -9.6253 -7.1320 38 1 -1.0385 -10.9565 -8.7972 39 1 1.3363 -2.9479 -3.0135 40 1 -0.3919 -3.3728 -3.0618 41 1 0.0872 -1.3312 -1.6633 42 1 -0.6788 -2.6470 -0.7390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592760979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:56 Heat of formation + Delta-G solvation = 1.448607 kcal Electronic energy + Delta-G solvation = -26912.384501 eV Core-core repulsion = 22984.687220 eV Total energy + Delta-G solvation = -3927.697282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38260 -39.93895 -37.99581 -37.31270 -36.35739 -34.52921 -32.34928 -31.60818 -30.34415 -29.98087 -29.43401 -26.21268 -24.89180 -23.99451 -22.42585 -22.25344 -21.26268 -20.59332 -19.69443 -19.22181 -18.30731 -17.13913 -17.06231 -16.75516 -16.02139 -15.91165 -15.80391 -14.99250 -14.84936 -14.70713 -14.33722 -13.89878 -13.77956 -13.53393 -13.24951 -13.09461 -13.00621 -12.58702 -12.44989 -12.41186 -12.37025 -11.52656 -11.31887 -11.15766 -10.98335 -10.72235 -10.70368 -10.45687 -10.28669 -10.17376 -10.06497 -9.83806 -9.78410 -9.59285 -9.33005 -8.83543 -8.44743 -8.18210 -6.70897 -5.79171 -3.21552 -0.29359 0.86267 0.97641 1.42308 1.77102 2.59044 2.94636 3.03156 3.15618 3.38861 3.44885 3.45765 4.00979 4.15797 4.47563 4.49201 4.51730 4.72441 5.09727 5.23904 5.32177 5.37942 5.42348 5.50547 5.57356 5.64086 5.77105 5.78026 6.02965 6.17532 6.19238 6.23799 6.37535 6.45229 6.54417 6.62528 6.73333 6.80965 6.90312 7.33954 7.47218 7.47664 7.66452 7.78720 8.10893 8.43632 9.19592 9.83068 10.39786 11.29621 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.002109 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.071175 B =13273.193873 C =13611.549806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.141 4.141 12 C 0.151 3.849 13 N -0.715 5.715 14 C 0.582 3.418 15 O -0.517 6.517 16 C -0.209 4.209 17 C -0.071 4.071 18 C -0.001 4.001 19 C -0.173 4.173 20 C 0.106 3.894 21 N -0.618 5.618 22 H 0.419 0.581 23 C 0.570 3.430 24 O -0.540 6.540 25 C -0.277 4.277 26 S 0.248 5.752 27 C -0.148 4.148 28 C 0.173 3.827 29 H 0.255 0.745 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.393 0.607 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.168 0.832 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 -22.966 -16.826 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.022 3.978 11 C -0.181 4.181 12 C 0.048 3.952 13 N -0.365 5.365 14 C 0.365 3.635 15 O -0.394 6.394 16 C -0.330 4.330 17 C -0.103 4.103 18 C -0.018 4.018 19 C -0.198 4.198 20 C -0.018 4.018 21 N -0.255 5.255 22 H 0.257 0.743 23 C 0.365 3.635 24 O -0.420 6.420 25 C -0.398 4.398 26 S 0.519 5.481 27 C -0.188 4.188 28 C 0.046 3.954 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.227 0.773 36 H 0.179 0.821 37 H 0.171 0.829 38 H 0.186 0.814 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.121 -22.006 -16.067 27.247 hybrid contribution -0.571 0.035 -0.904 1.070 sum -0.692 -21.971 -16.971 27.771 Atomic orbital electron populations 1.70020 1.05259 1.25694 1.53571 1.25051 0.95290 0.98454 1.00835 0.86364 0.78907 0.83340 0.78111 1.21050 1.21638 1.20866 1.19129 0.92658 0.84812 1.41824 0.91617 1.44158 1.35496 1.01328 1.50555 1.20830 0.98095 0.86709 0.92216 1.22371 0.96500 0.99991 0.99198 1.21176 0.99165 0.88675 0.86160 1.46288 1.08515 1.44870 1.36806 1.17061 0.85587 0.79712 0.81110 1.90846 1.22111 1.63631 1.62814 1.24581 0.98598 1.05715 1.04129 1.20077 1.01664 0.94702 0.93875 1.19320 0.91216 0.96008 0.95281 1.21370 1.00185 1.00412 0.97807 1.21467 0.82997 0.98798 0.98498 1.43009 1.07003 1.41245 1.34271 0.74252 1.15740 0.86354 0.80092 0.81359 1.91004 1.12964 1.67013 1.71031 1.24147 0.97864 1.10331 1.07497 1.84130 1.03915 1.35352 1.24723 1.22589 1.00651 0.94855 1.00694 1.20814 0.88629 0.98256 0.87651 0.93505 0.96099 0.92220 0.91678 0.92415 0.89527 0.77293 0.82104 0.82896 0.81435 0.92481 0.92671 0.89085 0.95988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 11.18 55.49 0.62 -25.56 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.90 9.59 -15.06 -0.14 -7.05 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.64 3.01 -172.10 -0.52 -15.16 16 10 C 0.15 3.01 6.50 -3.71 -0.02 2.99 16 11 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 12 C 0.15 2.58 2.41 -67.89 -0.16 2.42 16 13 N -0.72 -10.21 5.07 -54.88 -0.28 -10.49 16 14 C 0.58 8.70 7.77 -12.58 -0.10 8.60 16 15 O -0.52 -9.46 16.41 5.27 0.09 -9.38 16 16 C -0.21 -2.52 6.36 -37.32 -0.24 -2.76 16 17 C -0.07 -0.75 9.82 -40.50 -0.40 -1.15 16 18 C 0.00 -0.01 6.08 -105.08 -0.64 -0.65 16 19 C -0.17 -0.97 10.29 -37.17 -0.38 -1.35 16 20 C 0.11 0.40 11.11 -16.92 -0.19 0.21 16 21 N -0.62 -3.75 5.23 -14.86 -0.08 -3.83 16 22 H 0.42 1.45 8.87 -40.82 -0.36 1.09 16 23 C 0.57 6.11 7.71 -15.08 -0.12 6.00 16 24 O -0.54 -7.60 17.89 4.96 0.09 -7.51 16 25 C -0.28 -3.02 6.48 -37.76 -0.24 -3.27 16 26 S 0.25 2.71 22.27 -107.50 -2.39 0.31 16 27 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 28 C 0.17 4.15 5.33 -3.56 -0.02 4.13 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 35 H 0.39 4.67 7.67 -40.82 -0.31 4.36 16 36 H 0.16 1.56 7.98 -52.48 -0.42 1.15 16 37 H 0.15 0.46 8.06 -52.48 -0.42 0.04 16 38 H 0.17 -0.11 8.06 -52.49 -0.42 -0.54 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 2.45 6.04 -51.93 -0.31 2.14 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -35.06 364.78 -10.19 -45.24 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.14 Total: 1.68 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -3.04 Total: 2.60 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.25 Total: -55.03 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.18 Total: -16.88 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.39 Total: 0.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.06 -10.19 -45.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592760979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.693 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds