Wall clock time and date at job start Wed Apr 1 2020 04:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48497 * 109.46957 * 240.00251 * 3 2 1 5 5 H 1.48494 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47157 * 120.00230 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 197.25961 * 7 2 1 9 9 N 1.36937 * 119.99269 * 17.25596 * 7 2 1 10 10 C 1.46928 * 120.62751 * 207.39032 * 9 7 2 11 11 C 1.53184 * 108.89946 * 233.68087 * 10 9 7 12 12 C 1.53045 * 109.31045 * 305.29664 * 11 10 9 13 13 N 1.46500 * 109.45772 * 181.38140 * 12 11 10 14 14 C 1.34777 * 119.99730 * 154.99987 * 13 12 11 15 15 O 1.21613 * 119.99900 * 0.02562 * 14 13 12 16 16 C 1.47300 * 120.00154 * 180.02562 * 14 13 12 17 17 C 1.34217 * 124.79091 * 179.72409 * 16 14 13 18 18 C 1.39573 * 115.53052 * 179.85214 * 17 16 14 19 19 C 1.47749 * 129.59301 * 180.21015 * 18 17 16 20 20 C 1.34062 * 119.55582 * 180.25866 * 19 18 17 21 21 N 1.36551 * 121.42294 * 359.97438 * 20 19 18 22 22 H 0.96996 * 119.15839 * 180.02562 * 21 20 19 23 23 C 1.34304 * 121.67988 * 0.02562 * 21 20 19 24 24 O 1.21951 * 119.68966 * 180.02562 * 23 21 20 25 25 C 1.39391 * 112.90035 * 0.42063 * 18 17 16 26 26 S 1.75558 * 124.78939 * 0.02562 * 16 14 13 27 27 C 1.53036 * 109.53839 * 61.36417 * 12 11 10 28 28 C 1.47200 * 120.81872 * 27.54201 * 9 7 2 29 29 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58457 * 113.81908 * 10 9 7 31 31 H 1.09001 * 109.58548 * 353.54535 * 10 9 7 32 32 H 1.09004 * 109.49587 * 65.24382 * 11 10 9 33 33 H 1.09000 * 109.49989 * 185.34836 * 11 10 9 34 34 H 1.08993 * 109.45838 * 301.34309 * 12 11 10 35 35 H 0.96999 * 120.00683 * 335.00295 * 13 12 11 36 36 H 1.08003 * 122.23217 * 0.03044 * 17 16 14 37 37 H 1.08005 * 120.22322 * 0.28326 * 19 18 17 38 38 H 1.08001 * 119.28634 * 179.97438 * 20 19 18 39 39 H 1.09007 * 109.49849 * 58.58654 * 27 12 11 40 40 H 1.09003 * 109.49941 * 178.65147 * 27 12 11 41 41 H 1.09001 * 109.53557 * 6.52997 * 28 9 7 42 42 H 1.09002 * 109.67524 * 246.22900 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0538 -1.2234 0.2769 9 7 1.3717 -2.3612 -0.3529 10 6 1.8234 -3.6553 0.1762 11 6 2.0756 -4.6095 -0.9953 12 6 0.8160 -4.6926 -1.8606 13 7 1.0425 -5.6298 -2.9636 14 6 -0.0023 -6.2527 -3.5440 15 8 -1.1332 -6.0363 -3.1523 16 6 0.2254 -7.1954 -4.6526 17 6 -0.7408 -7.8704 -5.2946 18 6 -0.3071 -8.7120 -6.3202 19 6 -1.0922 -9.5833 -7.2187 20 6 -0.4604 -10.3209 -8.1429 21 7 0.8983 -10.2858 -8.2747 22 1 1.3214 -10.8328 -8.9549 23 6 1.6637 -9.5132 -7.4867 24 8 2.8739 -9.5095 -7.6364 25 6 1.0772 -8.7002 -6.4825 26 16 1.7997 -7.6004 -5.3157 27 6 0.4915 -3.3083 -2.4264 28 6 0.2213 -2.3393 -1.2711 29 1 -0.4850 0.8401 0.0004 30 1 1.0553 -4.0719 0.8279 31 1 2.7458 -3.5175 0.7404 32 1 2.9055 -4.2369 -1.5959 33 1 2.3194 -5.6002 -0.6117 34 1 -0.0192 -5.0417 -1.2534 35 1 1.9445 -5.8022 -3.2762 36 1 -1.7845 -7.7670 -5.0368 37 1 -2.1680 -9.6253 -7.1320 38 1 -1.0385 -10.9565 -8.7972 39 1 1.3363 -2.9479 -3.0135 40 1 -0.3919 -3.3728 -3.0618 41 1 0.0872 -1.3312 -1.6633 42 1 -0.6788 -2.6470 -0.7390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592760979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:55 Heat of formation + Delta-G solvation = -23.519313 kcal Electronic energy + Delta-G solvation = -26913.467192 eV Core-core repulsion = 22984.687220 eV Total energy + Delta-G solvation = -3928.779972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.05245 -41.18521 -39.19832 -38.49369 -37.11073 -36.10257 -34.04597 -32.51599 -31.75945 -31.29184 -30.68893 -27.49200 -26.31108 -24.78672 -23.95522 -23.74510 -22.36891 -21.66635 -21.07044 -20.05880 -19.31401 -18.69472 -17.97400 -17.68933 -17.11135 -16.82922 -16.75041 -16.66524 -16.20090 -15.73429 -15.39203 -15.36392 -15.26211 -14.78826 -14.58797 -14.44312 -14.12623 -13.78278 -13.77967 -13.22402 -13.07121 -13.04049 -13.00223 -12.69487 -12.57243 -12.16504 -12.12130 -12.10903 -11.88676 -11.58736 -11.50365 -11.50111 -11.20948 -10.60233 -10.54276 -10.22865 -10.08831 -8.80723 -8.72770 -7.87793 -5.32981 -1.10884 0.06352 0.40472 0.63315 0.98316 1.47602 1.50351 1.56903 1.85179 1.91643 2.04757 2.45395 2.51600 3.27466 3.34995 3.53947 3.64480 3.71006 3.80023 3.83952 4.01721 4.22870 4.27882 4.44184 4.50009 4.62795 4.63850 4.72262 4.81914 4.92786 4.98357 5.00531 5.03343 5.10439 5.22191 5.29198 5.36778 5.45070 5.63418 5.69058 5.74877 5.88129 6.29433 6.37978 6.83065 6.94113 7.12740 7.83553 8.36468 9.19416 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.002109 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.071175 B =13273.193873 C =13611.549806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.054 4.054 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.262 4.262 8 H 0.073 0.927 9 N -0.610 5.610 10 C 0.142 3.858 11 C -0.125 4.125 12 C 0.162 3.838 13 N -0.705 5.705 14 C 0.584 3.416 15 O -0.557 6.557 16 C -0.225 4.225 17 C -0.063 4.063 18 C 0.005 3.995 19 C -0.188 4.188 20 C 0.132 3.868 21 N -0.602 5.602 22 H 0.434 0.566 23 C 0.560 3.440 24 O -0.587 6.587 25 C -0.303 4.303 26 S 0.237 5.763 27 C -0.132 4.132 28 C 0.182 3.818 29 H 0.250 0.750 30 H 0.016 0.984 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.408 0.592 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.227 0.773 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.057 0.943 42 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 -25.618 -18.956 31.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.392 4.392 8 H 0.091 0.909 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.165 4.165 12 C 0.058 3.942 13 N -0.355 5.355 14 C 0.370 3.630 15 O -0.436 6.436 16 C -0.346 4.346 17 C -0.096 4.096 18 C -0.012 4.012 19 C -0.212 4.212 20 C 0.008 3.992 21 N -0.238 5.238 22 H 0.275 0.725 23 C 0.355 3.645 24 O -0.472 6.472 25 C -0.423 4.423 26 S 0.508 5.492 27 C -0.172 4.172 28 C 0.055 3.945 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.244 0.756 36 H 0.186 0.814 37 H 0.202 0.798 38 H 0.243 0.757 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 0.185 -24.720 -18.228 30.714 hybrid contribution -0.770 0.693 -0.332 1.088 sum -0.585 -24.027 -18.560 30.366 Atomic orbital electron populations 1.70190 1.06798 1.25937 1.55374 1.25846 0.96022 1.01707 1.01346 0.85324 0.77511 0.79108 0.78410 1.20414 1.22306 1.19868 1.19514 0.93109 0.85860 1.40669 0.90932 1.44405 1.35349 1.02468 1.51156 1.21023 0.98047 0.85484 0.93804 1.22187 0.96003 1.00750 0.97538 1.20815 0.99157 0.87532 0.86726 1.46005 1.09394 1.44084 1.36051 1.17377 0.84882 0.79535 0.81218 1.90824 1.23541 1.65071 1.64202 1.24237 0.99911 1.06333 1.04163 1.20308 1.01749 0.94005 0.93577 1.19653 0.90974 0.95612 0.94946 1.21814 1.01635 1.00183 0.97591 1.22386 0.81722 0.97457 0.97640 1.43023 1.08000 1.39647 1.33156 0.72499 1.15861 0.86115 0.80643 0.81855 1.90975 1.14802 1.68845 1.72547 1.24290 0.98650 1.11198 1.08210 1.84029 1.03196 1.36401 1.25590 1.22332 1.00540 0.95582 0.98788 1.20527 0.87881 0.97428 0.88647 0.94138 0.96624 0.91352 0.90765 0.88882 0.91279 0.75568 0.81407 0.79809 0.75665 0.92125 0.93139 0.92469 0.98753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.51 11.18 21.65 0.24 -56.26 16 2 C -0.05 -3.04 4.92 84.86 0.42 -2.63 16 3 Si 0.97 45.13 29.59 68.60 2.03 47.16 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.26 -14.32 9.59 84.04 0.81 -13.51 16 8 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 9 N -0.61 -30.70 3.01 -698.39 -2.10 -32.80 16 10 C 0.14 5.70 6.50 86.36 0.56 6.26 16 11 C -0.13 -3.90 5.55 30.67 0.17 -3.73 16 12 C 0.16 5.50 2.41 45.02 0.11 5.61 16 13 N -0.71 -19.74 5.07 -445.81 -2.26 -22.00 16 14 C 0.58 17.48 7.77 86.63 0.67 18.15 16 15 O -0.56 -20.74 16.41 -4.07 -0.07 -20.81 16 16 C -0.23 -5.37 6.36 23.74 0.15 -5.22 16 17 C -0.06 -1.26 9.82 21.67 0.21 -1.05 16 18 C 0.00 0.08 6.08 -20.16 -0.12 -0.05 16 19 C -0.19 -1.30 10.29 23.83 0.25 -1.06 16 20 C 0.13 0.30 11.11 83.01 0.92 1.23 16 21 N -0.60 -5.27 5.23 -319.29 -1.67 -6.94 16 22 H 0.43 1.48 8.87 -92.71 -0.82 0.65 16 23 C 0.56 11.25 7.71 85.22 0.66 11.91 16 24 O -0.59 -16.46 17.89 -5.15 -0.09 -16.56 16 25 C -0.30 -6.28 6.48 23.45 0.15 -6.13 16 26 S 0.24 5.13 22.27 -56.49 -1.26 3.87 16 27 C -0.13 -5.32 5.65 30.67 0.17 -5.14 16 28 C 0.18 9.13 5.33 86.31 0.46 9.59 16 29 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 30 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.07 2.59 7.93 -2.39 -0.02 2.58 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 35 H 0.41 9.23 7.67 -92.71 -0.71 8.52 16 36 H 0.17 3.06 7.98 -2.91 -0.02 3.04 16 37 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 38 H 0.23 -2.01 8.06 -2.91 -0.02 -2.03 16 39 H 0.06 2.38 8.14 -2.38 -0.02 2.37 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 3.24 6.04 -2.39 -0.01 3.23 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: -1.00 -81.16 364.78 -0.03 -81.19 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -0.44 Total: 8.92 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 5.59 Total: 14.23 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -5.79 Total: -118.00 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.16 Total: -37.36 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -1.26 Total: 3.87 kcal Total: -81.16 -0.03 -81.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592760979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.672 kcal (2) G-P(sol) polarization free energy of solvation -81.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds