Wall clock time and date at job start Wed Apr 1 2020 04:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00101 * 2 1 4 4 H 1.48499 * 109.47408 * 239.99524 * 3 2 1 5 5 H 1.48498 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47206 * 119.99603 * 3 2 1 7 7 C 1.37882 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99407 * 359.73224 * 7 2 1 10 10 H 1.08994 * 109.50176 * 60.27605 * 9 7 2 11 11 C 1.53044 * 109.49401 * 180.33922 * 9 7 2 12 12 C 1.53038 * 109.53696 * 181.31603 * 11 9 7 13 13 C 1.53186 * 109.31442 * 298.63147 * 12 11 9 14 14 N 1.46934 * 108.77512 * 54.63505 * 13 12 11 15 15 C 1.34773 * 120.62960 * 126.43624 * 14 13 12 16 16 O 1.21600 * 119.99997 * 176.21293 * 15 14 13 17 17 C 1.47510 * 120.00287 * 356.20376 * 15 14 13 18 18 C 1.39565 * 120.48065 * 230.23379 * 17 15 14 19 19 N 1.31549 * 120.68036 * 179.67098 * 18 17 15 20 20 C 1.32735 * 122.06128 * 0.59699 * 19 18 17 21 21 C 1.39931 * 120.73830 * 359.75151 * 20 19 18 22 22 C 1.38622 * 118.94902 * 359.91331 * 21 20 19 23 23 N 1.39369 * 121.71908 * 179.79057 * 21 20 19 24 24 C 1.33399 * 124.37450 * 23.99212 * 23 21 20 25 25 O 1.21296 * 118.58488 * 178.40639 * 24 23 21 26 26 C 1.50211 * 122.83972 * 358.39646 * 24 23 21 27 27 S 1.76402 * 119.55728 * 179.76339 * 20 19 18 28 28 C 1.46935 * 118.76562 * 306.41360 * 14 13 12 29 29 H 0.97007 * 119.99697 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.45799 * 301.33570 * 11 9 7 31 31 H 1.08998 * 109.46464 * 61.30567 * 11 9 7 32 32 H 1.09005 * 109.49747 * 58.58535 * 12 11 9 33 33 H 1.09003 * 109.49708 * 178.68256 * 12 11 9 34 34 H 1.08996 * 109.59391 * 174.42040 * 13 12 11 35 35 H 1.08999 * 109.58758 * 294.84995 * 13 12 11 36 36 H 1.07998 * 119.65174 * 359.94605 * 18 17 15 37 37 H 1.07997 * 120.74146 * 180.02562 * 22 21 20 38 38 H 0.97005 * 117.81820 * 203.97876 * 23 21 20 39 39 H 1.09005 * 109.44882 * 202.43204 * 26 24 23 40 40 H 1.08997 * 109.43137 * 82.49231 * 26 24 23 41 41 H 1.09003 * 109.55852 * 293.78917 * 28 14 13 42 42 H 1.08995 * 109.61441 * 173.35329 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0072 10 1 0.6243 -2.5620 -0.8823 11 6 2.2450 -3.6628 0.0150 12 6 1.4810 -4.9886 -0.0114 13 6 0.6045 -5.0932 1.2406 14 7 -0.2542 -3.9034 1.3174 15 6 -1.5906 -4.0278 1.4397 16 8 -2.2839 -3.0376 1.5716 17 6 -2.2124 -5.3652 1.4134 18 6 -3.2940 -5.6266 0.5710 19 7 -3.8474 -6.8196 0.5397 20 6 -3.4183 -7.8157 1.3049 21 6 -2.3432 -7.6321 2.1815 22 6 -1.7286 -6.3909 2.2389 23 7 -1.8787 -8.6623 2.9972 24 6 -2.0448 -9.9605 2.7391 25 8 -1.5709 -10.7704 3.5077 26 6 -2.7937 -10.4629 1.5377 27 16 -4.2134 -9.3877 1.2138 28 6 0.3712 -2.5751 1.2590 29 1 -0.4850 0.8401 -0.0004 30 1 2.8882 -3.5968 -0.8626 31 1 2.8551 -3.6133 0.9168 32 1 0.8517 -5.0283 -0.9005 33 1 2.1898 -5.8166 -0.0294 34 1 -0.0153 -5.9877 1.1791 35 1 1.2374 -5.1449 2.1265 36 1 -3.6778 -4.8425 -0.0648 37 1 -0.8962 -6.2173 2.9048 38 1 -1.4025 -8.4192 3.8066 39 1 -3.1429 -11.4781 1.7261 40 1 -2.1323 -10.4614 0.6714 41 1 0.9848 -2.4213 2.1468 42 1 -0.4020 -1.8085 1.2093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:34 Heat of formation + Delta-G solvation = -23.783807 kcal Electronic energy + Delta-G solvation = -28056.803779 eV Core-core repulsion = 24128.012338 eV Total energy + Delta-G solvation = -3928.791441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45944 -40.25483 -39.06583 -36.90733 -36.13283 -33.84150 -32.67793 -31.78794 -30.81570 -30.36998 -29.83947 -26.00073 -25.25480 -24.17400 -24.00651 -21.98484 -21.67279 -20.17925 -18.95470 -18.72544 -18.04673 -17.89320 -16.90282 -16.77474 -16.14764 -16.07741 -15.53178 -15.36619 -14.75680 -14.66082 -14.34406 -14.24060 -13.96213 -13.77400 -13.59918 -13.45692 -12.96798 -12.74475 -12.59869 -12.25787 -12.02291 -11.72395 -11.70111 -11.15665 -11.02795 -10.82792 -10.63632 -10.59158 -10.36366 -10.32800 -10.03301 -9.97009 -9.51265 -9.24248 -9.20693 -9.02893 -8.52417 -8.09209 -7.94166 -6.08432 -4.17254 0.09326 0.59874 0.73287 1.46754 2.02356 2.25589 2.82618 3.20060 3.28016 3.33635 3.34511 3.48288 3.57445 4.01887 4.23001 4.32068 4.36333 4.46974 4.52277 4.72173 4.92336 5.06783 5.11069 5.22144 5.31979 5.49754 5.57092 5.80717 5.84328 6.00207 6.03569 6.17179 6.45019 6.46982 6.52093 6.71290 6.84259 6.97006 7.06977 7.21113 7.32857 7.51175 7.74522 7.86632 8.02714 8.27198 8.54210 8.86467 9.48980 10.97055 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.002667 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.030358 B =10496.233136 C =11160.031153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.098 3.902 14 N -0.593 5.593 15 C 0.549 3.451 16 O -0.519 6.519 17 C -0.122 4.122 18 C 0.144 3.856 19 N -0.429 5.429 20 C 0.081 3.919 21 C 0.107 3.893 22 C -0.069 4.069 23 N -0.650 5.650 24 C 0.528 3.472 25 O -0.512 6.512 26 C -0.148 4.148 27 S -0.010 6.010 28 C 0.112 3.888 29 H 0.265 0.735 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.179 0.821 37 H 0.154 0.846 38 H 0.418 0.582 39 H 0.155 0.845 40 H 0.130 0.870 41 H 0.046 0.954 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 -19.591 3.313 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.025 4.025 14 N -0.324 5.324 15 C 0.334 3.666 16 O -0.395 6.395 17 C -0.131 4.131 18 C -0.019 4.019 19 N -0.139 5.139 20 C -0.170 4.170 21 C 0.002 3.998 22 C -0.099 4.099 23 N -0.296 5.296 24 C 0.313 3.687 25 O -0.387 6.387 26 C -0.299 4.299 27 S 0.229 5.771 28 C -0.008 4.008 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.196 0.804 37 H 0.171 0.829 38 H 0.257 0.743 39 H 0.173 0.827 40 H 0.148 0.852 41 H 0.065 0.935 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.599 -20.061 2.841 21.309 hybrid contribution 2.758 1.604 1.064 3.363 sum -3.841 -18.457 3.905 19.252 Atomic orbital electron populations 1.69850 1.05751 1.27133 1.49085 1.25047 0.94906 0.99309 0.94688 0.86635 0.79584 0.83054 0.78613 1.20254 1.21197 1.20235 1.21025 0.92913 0.90028 1.52181 0.92341 1.18969 0.92607 0.92400 0.93864 0.95175 1.21638 0.98589 0.93887 1.00767 1.21947 0.98615 0.99323 0.97315 1.21949 0.93576 0.87961 0.99039 1.48516 1.04767 1.09454 1.69702 1.17860 0.82840 0.87204 0.78687 1.90873 1.61668 1.37902 1.49091 1.21218 0.98110 0.95399 0.98345 1.22987 0.90423 0.93094 0.95378 1.67848 1.27799 0.99643 1.18571 1.22947 0.96124 1.00194 0.97692 1.18271 0.96421 0.89602 0.95476 1.21514 0.98707 0.90289 0.99348 1.43071 1.56375 1.04374 1.25733 1.19907 0.79617 0.81655 0.87549 1.90851 1.47822 1.52383 1.47650 1.23848 1.00743 1.04922 1.00368 1.86128 1.09682 0.92107 1.89200 1.22434 0.98867 0.80572 0.98911 0.92464 0.92823 0.93095 0.92018 0.92136 0.90945 0.91586 0.80428 0.82857 0.74306 0.82729 0.85228 0.93531 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.58 11.39 55.43 0.63 -23.95 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.49 8.57 -34.44 -0.30 -13.79 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.94 2.25 -91.65 -0.21 0.73 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.04 5.11 -26.69 -0.14 -2.18 16 12 C -0.13 -1.96 6.08 -26.62 -0.16 -2.12 16 13 C 0.10 1.34 5.40 -3.71 -0.02 1.32 16 14 N -0.59 -10.61 2.97 -173.99 -0.52 -11.13 16 15 C 0.55 9.88 7.25 -12.48 -0.09 9.79 16 16 O -0.52 -11.59 16.47 5.28 0.09 -11.51 16 17 C -0.12 -1.67 5.01 -104.86 -0.53 -2.20 16 18 C 0.14 1.91 10.89 -17.18 -0.19 1.72 16 19 N -0.43 -5.49 10.30 -11.52 -0.12 -5.61 16 20 C 0.08 0.91 6.88 -16.53 -0.11 0.79 16 21 C 0.11 1.05 6.50 -83.66 -0.54 0.51 16 22 C -0.07 -0.73 7.28 -38.67 -0.28 -1.01 16 23 N -0.65 -5.41 5.13 -10.26 -0.05 -5.46 16 24 C 0.53 4.73 7.59 -11.83 -0.09 4.64 16 25 O -0.51 -6.06 17.80 5.54 0.10 -5.96 16 26 C -0.15 -0.98 6.46 35.77 0.23 -0.75 16 27 S -0.01 -0.09 22.56 -107.50 -2.42 -2.51 16 28 C 0.11 2.49 5.39 -3.70 -0.02 2.47 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.82 4.54 -51.93 -0.24 0.58 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.18 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.15 1.31 7.11 -52.49 -0.37 0.94 16 38 H 0.42 2.83 8.66 -40.82 -0.35 2.47 16 39 H 0.15 0.73 8.13 -51.91 -0.42 0.31 16 40 H 0.13 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.13 3.31 5.13 -51.93 -0.27 3.04 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -31.65 356.27 -9.48 -41.13 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.00 Total: 2.56 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.53 Total: 1.53 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.06 Total: -46.15 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.19 Total: -17.47 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.42 Total: -2.51 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.65 -9.48 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.345 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds