Wall clock time and date at job start Wed Apr 1 2020 04:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00101 * 2 1 4 4 H 1.48499 * 109.47408 * 239.99524 * 3 2 1 5 5 H 1.48498 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47206 * 119.99603 * 3 2 1 7 7 C 1.37882 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99407 * 359.73224 * 7 2 1 10 10 H 1.08994 * 109.50176 * 60.27605 * 9 7 2 11 11 C 1.53044 * 109.49401 * 180.33922 * 9 7 2 12 12 C 1.53038 * 109.53696 * 181.31603 * 11 9 7 13 13 C 1.53186 * 109.31442 * 298.63147 * 12 11 9 14 14 N 1.46934 * 108.77512 * 54.63505 * 13 12 11 15 15 C 1.34773 * 120.62960 * 126.43624 * 14 13 12 16 16 O 1.21600 * 119.99997 * 176.21293 * 15 14 13 17 17 C 1.47510 * 120.00287 * 356.20376 * 15 14 13 18 18 C 1.39565 * 120.48065 * 230.23379 * 17 15 14 19 19 N 1.31549 * 120.68036 * 179.67098 * 18 17 15 20 20 C 1.32735 * 122.06128 * 0.59699 * 19 18 17 21 21 C 1.39931 * 120.73830 * 359.75151 * 20 19 18 22 22 C 1.38622 * 118.94902 * 359.91331 * 21 20 19 23 23 N 1.39369 * 121.71908 * 179.79057 * 21 20 19 24 24 C 1.33399 * 124.37450 * 23.99212 * 23 21 20 25 25 O 1.21296 * 118.58488 * 178.40639 * 24 23 21 26 26 C 1.50211 * 122.83972 * 358.39646 * 24 23 21 27 27 S 1.76402 * 119.55728 * 179.76339 * 20 19 18 28 28 C 1.46935 * 118.76562 * 306.41360 * 14 13 12 29 29 H 0.97007 * 119.99697 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.45799 * 301.33570 * 11 9 7 31 31 H 1.08998 * 109.46464 * 61.30567 * 11 9 7 32 32 H 1.09005 * 109.49747 * 58.58535 * 12 11 9 33 33 H 1.09003 * 109.49708 * 178.68256 * 12 11 9 34 34 H 1.08996 * 109.59391 * 174.42040 * 13 12 11 35 35 H 1.08999 * 109.58758 * 294.84995 * 13 12 11 36 36 H 1.07998 * 119.65174 * 359.94605 * 18 17 15 37 37 H 1.07997 * 120.74146 * 180.02562 * 22 21 20 38 38 H 0.97005 * 117.81820 * 203.97876 * 23 21 20 39 39 H 1.09005 * 109.44882 * 202.43204 * 26 24 23 40 40 H 1.08997 * 109.43137 * 82.49231 * 26 24 23 41 41 H 1.09003 * 109.55852 * 293.78917 * 28 14 13 42 42 H 1.08995 * 109.61441 * 173.35329 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0072 10 1 0.6243 -2.5620 -0.8823 11 6 2.2450 -3.6628 0.0150 12 6 1.4810 -4.9886 -0.0114 13 6 0.6045 -5.0932 1.2406 14 7 -0.2542 -3.9034 1.3174 15 6 -1.5906 -4.0278 1.4397 16 8 -2.2839 -3.0376 1.5716 17 6 -2.2124 -5.3652 1.4134 18 6 -3.2940 -5.6266 0.5710 19 7 -3.8474 -6.8196 0.5397 20 6 -3.4183 -7.8157 1.3049 21 6 -2.3432 -7.6321 2.1815 22 6 -1.7286 -6.3909 2.2389 23 7 -1.8787 -8.6623 2.9972 24 6 -2.0448 -9.9605 2.7391 25 8 -1.5709 -10.7704 3.5077 26 6 -2.7937 -10.4629 1.5377 27 16 -4.2134 -9.3877 1.2138 28 6 0.3712 -2.5751 1.2590 29 1 -0.4850 0.8401 -0.0004 30 1 2.8882 -3.5968 -0.8626 31 1 2.8551 -3.6133 0.9168 32 1 0.8517 -5.0283 -0.9005 33 1 2.1898 -5.8166 -0.0294 34 1 -0.0153 -5.9877 1.1791 35 1 1.2374 -5.1449 2.1265 36 1 -3.6778 -4.8425 -0.0648 37 1 -0.8962 -6.2173 2.9048 38 1 -1.4025 -8.4192 3.8066 39 1 -3.1429 -11.4781 1.7261 40 1 -2.1323 -10.4614 0.6714 41 1 0.9848 -2.4213 2.1468 42 1 -0.4020 -1.8085 1.2093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:33 Heat of formation + Delta-G solvation = -45.507143 kcal Electronic energy + Delta-G solvation = -28057.745774 eV Core-core repulsion = 24128.012338 eV Total energy + Delta-G solvation = -3929.733436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.36698 -41.27912 -40.24417 -38.40140 -36.98184 -35.47981 -34.05760 -33.16634 -31.61181 -31.38984 -31.14057 -27.39684 -26.88575 -25.28525 -25.04971 -23.46975 -22.64003 -21.44568 -20.25089 -19.56808 -18.99677 -18.87260 -18.36945 -17.72298 -17.66382 -17.09116 -16.69075 -16.54665 -16.18530 -15.76125 -15.51456 -15.34844 -15.14726 -14.91757 -14.55103 -14.50832 -14.36149 -14.25777 -13.83373 -13.56882 -13.43933 -12.85640 -12.76879 -12.57064 -12.42021 -12.29507 -12.27823 -11.94089 -11.66643 -11.61493 -11.49711 -11.10663 -11.00468 -10.85421 -10.60276 -10.49978 -10.00425 -9.51209 -8.81599 -8.11081 -6.27317 -0.81755 -0.28597 -0.01876 0.73635 1.34060 1.42301 1.42773 1.47236 1.51317 1.61571 1.98915 2.38036 2.42916 2.84438 3.10092 3.17863 3.26470 3.51603 3.57016 3.89104 3.95960 3.98686 4.10295 4.12825 4.31342 4.32971 4.55675 4.65961 4.70339 4.76605 4.82659 4.96894 5.07959 5.21879 5.24851 5.28217 5.34693 5.50280 5.60369 5.72433 5.89863 5.98856 6.32209 6.35194 6.52439 6.57402 6.84705 7.12192 7.42951 8.92129 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.002667 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.030358 B =10496.233136 C =11160.031153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.012 1.012 11 C -0.105 4.105 12 C -0.128 4.128 13 C 0.094 3.906 14 N -0.595 5.595 15 C 0.549 3.451 16 O -0.576 6.576 17 C -0.136 4.136 18 C 0.138 3.862 19 N -0.443 5.443 20 C 0.077 3.923 21 C 0.121 3.879 22 C -0.052 4.052 23 N -0.642 5.642 24 C 0.530 3.470 25 O -0.539 6.539 26 C -0.140 4.140 27 S -0.006 6.006 28 C 0.125 3.875 29 H 0.260 0.740 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.169 0.831 37 H 0.180 0.820 38 H 0.427 0.573 39 H 0.179 0.821 40 H 0.153 0.847 41 H 0.044 0.956 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 -22.950 4.105 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.007 0.993 11 C -0.143 4.143 12 C -0.166 4.166 13 C -0.027 4.027 14 N -0.325 5.325 15 C 0.336 3.664 16 O -0.457 6.457 17 C -0.144 4.144 18 C -0.024 4.024 19 N -0.153 5.153 20 C -0.175 4.175 21 C 0.016 3.984 22 C -0.082 4.082 23 N -0.287 5.287 24 C 0.317 3.683 25 O -0.416 6.416 26 C -0.291 4.291 27 S 0.233 5.767 28 C 0.004 3.996 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.186 0.814 37 H 0.197 0.803 38 H 0.268 0.732 39 H 0.196 0.804 40 H 0.171 0.829 41 H 0.062 0.938 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.117 -23.466 3.631 24.290 hybrid contribution 2.268 2.505 0.817 3.477 sum -2.849 -20.961 4.448 21.616 Atomic orbital electron populations 1.70049 1.07295 1.27362 1.50512 1.25842 0.95536 1.02736 0.94620 0.85667 0.78317 0.79016 0.79017 1.19511 1.21588 1.19230 1.21480 0.93299 0.91470 1.51216 0.92005 1.18902 0.93101 0.93733 0.92315 0.99349 1.21521 0.97686 0.94006 1.01104 1.21916 0.98988 0.98368 0.97291 1.22305 0.93626 0.86999 0.99765 1.48465 1.05433 1.09263 1.69346 1.18425 0.82478 0.88341 0.77116 1.90835 1.62885 1.40416 1.51540 1.20688 0.99070 0.93817 1.00824 1.22863 0.90513 0.93457 0.95596 1.67907 1.28247 0.99673 1.19516 1.23441 0.96167 1.00797 0.97052 1.18091 0.95720 0.89608 0.95020 1.21631 0.98844 0.89431 0.98301 1.43017 1.56008 1.03984 1.25715 1.20238 0.79077 0.81317 0.87683 1.90858 1.49133 1.52903 1.48710 1.24018 0.99857 1.05077 1.00140 1.86231 1.10771 0.91017 1.88634 1.21809 0.97349 0.82190 0.98296 0.93076 0.93059 0.92132 0.93226 0.87852 0.87887 0.88893 0.81381 0.80281 0.73245 0.80402 0.82948 0.93781 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.83 11.39 21.45 0.24 -53.58 16 2 C 0.01 0.68 5.30 84.66 0.45 1.12 16 3 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -28.38 8.57 25.60 0.22 -28.16 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.04 1.84 2.25 -11.46 -0.03 1.82 16 10 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 11 C -0.11 -3.76 5.11 30.62 0.16 -3.60 16 12 C -0.13 -3.39 6.08 30.67 0.19 -3.21 16 13 C 0.09 2.31 5.40 86.36 0.47 2.78 16 14 N -0.59 -21.41 2.97 -822.66 -2.45 -23.85 16 15 C 0.55 20.37 7.25 86.69 0.63 20.99 16 16 O -0.58 -27.59 16.47 -4.03 -0.07 -27.66 16 17 C -0.14 -3.63 5.01 -20.02 -0.10 -3.73 16 18 C 0.14 3.71 10.89 85.06 0.93 4.63 16 19 N -0.44 -10.94 10.30 -190.35 -1.96 -12.90 16 20 C 0.08 1.53 6.88 84.97 0.58 2.11 16 21 C 0.12 2.00 6.50 38.45 0.25 2.25 16 22 C -0.05 -0.96 7.28 22.86 0.17 -0.80 16 23 N -0.64 -8.29 5.13 -305.52 -1.57 -9.86 16 24 C 0.53 7.53 7.59 87.72 0.67 8.19 16 25 O -0.54 -11.01 17.80 -3.08 -0.05 -11.06 16 26 C -0.14 -1.29 6.46 71.08 0.46 -0.83 16 27 S -0.01 -0.08 22.56 -56.49 -1.27 -1.36 16 28 C 0.13 5.83 5.39 86.36 0.47 6.30 16 29 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 30 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.10 1.92 4.54 -2.39 -0.01 1.91 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.17 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.18 2.33 7.11 -2.91 -0.02 2.31 16 38 H 0.43 4.14 8.66 -92.70 -0.80 3.34 16 39 H 0.18 0.89 8.13 -2.39 -0.02 0.87 16 40 H 0.15 0.83 8.14 -2.40 -0.02 0.81 16 41 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 42 H 0.08 4.50 5.13 -2.39 -0.01 4.48 16 Total: -1.00 -74.41 356.27 0.68 -73.73 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.28 Total: 11.53 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.50 Total: 9.88 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -5.73 Total: -100.19 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.12 Total: -38.72 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.27 Total: -1.36 kcal Total: -74.41 0.68 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.219 kcal (2) G-P(sol) polarization free energy of solvation -74.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds