Wall clock time and date at job start Wed Apr 1 2020 04:22:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86799 * 120.00101 * 2 1
4 4 H 1.48499 * 109.47408 * 239.99524 * 3 2 1
5 5 H 1.48498 * 109.47175 * 359.97438 * 3 2 1
6 6 H 1.48505 * 109.47206 * 119.99603 * 3 2 1
7 7 C 1.37882 * 120.00180 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00122 * 180.02562 * 7 2 1
9 9 C 1.50701 * 119.99407 * 359.73224 * 7 2 1
10 10 H 1.08994 * 109.50176 * 60.27605 * 9 7 2
11 11 C 1.53044 * 109.49401 * 180.33922 * 9 7 2
12 12 C 1.53038 * 109.53696 * 181.31603 * 11 9 7
13 13 C 1.53186 * 109.31442 * 298.63147 * 12 11 9
14 14 N 1.46934 * 108.77512 * 54.63505 * 13 12 11
15 15 C 1.34773 * 120.62960 * 126.43624 * 14 13 12
16 16 O 1.21600 * 119.99997 * 176.21293 * 15 14 13
17 17 C 1.47510 * 120.00287 * 356.20376 * 15 14 13
18 18 C 1.39565 * 120.48065 * 230.23379 * 17 15 14
19 19 N 1.31549 * 120.68036 * 179.67098 * 18 17 15
20 20 C 1.32735 * 122.06128 * 0.59699 * 19 18 17
21 21 C 1.39931 * 120.73830 * 359.75151 * 20 19 18
22 22 C 1.38622 * 118.94902 * 359.91331 * 21 20 19
23 23 N 1.39369 * 121.71908 * 179.79057 * 21 20 19
24 24 C 1.33399 * 124.37450 * 23.99212 * 23 21 20
25 25 O 1.21296 * 118.58488 * 178.40639 * 24 23 21
26 26 C 1.50211 * 122.83972 * 358.39646 * 24 23 21
27 27 S 1.76402 * 119.55728 * 179.76339 * 20 19 18
28 28 C 1.46935 * 118.76562 * 306.41360 * 14 13 12
29 29 H 0.97007 * 119.99697 * 0.02562 * 1 2 3
30 30 H 1.09006 * 109.45799 * 301.33570 * 11 9 7
31 31 H 1.08998 * 109.46464 * 61.30567 * 11 9 7
32 32 H 1.09005 * 109.49747 * 58.58535 * 12 11 9
33 33 H 1.09003 * 109.49708 * 178.68256 * 12 11 9
34 34 H 1.08996 * 109.59391 * 174.42040 * 13 12 11
35 35 H 1.08999 * 109.58758 * 294.84995 * 13 12 11
36 36 H 1.07998 * 119.65174 * 359.94605 * 18 17 15
37 37 H 1.07997 * 120.74146 * 180.02562 * 22 21 20
38 38 H 0.97005 * 117.81820 * 203.97876 * 23 21 20
39 39 H 1.09005 * 109.44882 * 202.43204 * 26 24 23
40 40 H 1.08997 * 109.43137 * 82.49231 * 26 24 23
41 41 H 1.09003 * 109.55852 * 293.78917 * 28 14 13
42 42 H 1.08995 * 109.61441 * 173.35329 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6964 -1.2124
5 1 1.2842 2.7464 -0.0006
6 1 3.1029 1.6964 1.2126
7 6 2.0046 -1.1941 0.0005
8 1 3.0846 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0072
10 1 0.6243 -2.5620 -0.8823
11 6 2.2450 -3.6628 0.0150
12 6 1.4810 -4.9886 -0.0114
13 6 0.6045 -5.0932 1.2406
14 7 -0.2542 -3.9034 1.3174
15 6 -1.5906 -4.0278 1.4397
16 8 -2.2839 -3.0376 1.5716
17 6 -2.2124 -5.3652 1.4134
18 6 -3.2940 -5.6266 0.5710
19 7 -3.8474 -6.8196 0.5397
20 6 -3.4183 -7.8157 1.3049
21 6 -2.3432 -7.6321 2.1815
22 6 -1.7286 -6.3909 2.2389
23 7 -1.8787 -8.6623 2.9972
24 6 -2.0448 -9.9605 2.7391
25 8 -1.5709 -10.7704 3.5077
26 6 -2.7937 -10.4629 1.5377
27 16 -4.2134 -9.3877 1.2138
28 6 0.3712 -2.5751 1.2590
29 1 -0.4850 0.8401 -0.0004
30 1 2.8882 -3.5968 -0.8626
31 1 2.8551 -3.6133 0.9168
32 1 0.8517 -5.0283 -0.9005
33 1 2.1898 -5.8166 -0.0294
34 1 -0.0153 -5.9877 1.1791
35 1 1.2374 -5.1449 2.1265
36 1 -3.6778 -4.8425 -0.0648
37 1 -0.8962 -6.2173 2.9048
38 1 -1.4025 -8.4192 3.8066
39 1 -3.1429 -11.4781 1.7261
40 1 -2.1323 -10.4614 0.6714
41 1 0.9848 -2.4213 2.1468
42 1 -0.4020 -1.8085 1.2093
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597903097.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:22:33
Heat of formation + Delta-G solvation = -45.507143 kcal
Electronic energy + Delta-G solvation = -28057.745774 eV
Core-core repulsion = 24128.012338 eV
Total energy + Delta-G solvation = -3929.733436 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.36698 -41.27912 -40.24417 -38.40140 -36.98184 -35.47981 -34.05760 -33.16634
-31.61181 -31.38984 -31.14057 -27.39684 -26.88575 -25.28525 -25.04971 -23.46975
-22.64003 -21.44568 -20.25089 -19.56808 -18.99677 -18.87260 -18.36945 -17.72298
-17.66382 -17.09116 -16.69075 -16.54665 -16.18530 -15.76125 -15.51456 -15.34844
-15.14726 -14.91757 -14.55103 -14.50832 -14.36149 -14.25777 -13.83373 -13.56882
-13.43933 -12.85640 -12.76879 -12.57064 -12.42021 -12.29507 -12.27823 -11.94089
-11.66643 -11.61493 -11.49711 -11.10663 -11.00468 -10.85421 -10.60276 -10.49978
-10.00425 -9.51209 -8.81599 -8.11081 -6.27317 -0.81755 -0.28597 -0.01876
0.73635 1.34060 1.42301 1.42773 1.47236 1.51317 1.61571 1.98915
2.38036 2.42916 2.84438 3.10092 3.17863 3.26470 3.51603 3.57016
3.89104 3.95960 3.98686 4.10295 4.12825 4.31342 4.32971 4.55675
4.65961 4.70339 4.76605 4.82659 4.96894 5.07959 5.21879 5.24851
5.28217 5.34693 5.50280 5.60369 5.72433 5.89863 5.98856 6.32209
6.35194 6.52439 6.57402 6.84705 7.12192 7.42951 8.92129
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.022394 B = 0.002667 C = 0.002508
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1250.030358 B =10496.233136 C =11160.031153
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.914 5.914
2 C 0.012 3.988
3 Si 0.954 3.046
4 H -0.270 1.270
5 H -0.290 1.290
6 H -0.267 1.267
7 C -0.536 4.536
8 H 0.062 0.938
9 C 0.039 3.961
10 H -0.012 1.012
11 C -0.105 4.105
12 C -0.128 4.128
13 C 0.094 3.906
14 N -0.595 5.595
15 C 0.549 3.451
16 O -0.576 6.576
17 C -0.136 4.136
18 C 0.138 3.862
19 N -0.443 5.443
20 C 0.077 3.923
21 C 0.121 3.879
22 C -0.052 4.052
23 N -0.642 5.642
24 C 0.530 3.470
25 O -0.539 6.539
26 C -0.140 4.140
27 S -0.006 6.006
28 C 0.125 3.875
29 H 0.260 0.740
30 H 0.051 0.949
31 H 0.060 0.940
32 H 0.049 0.951
33 H 0.103 0.897
34 H 0.103 0.897
35 H 0.093 0.907
36 H 0.169 0.831
37 H 0.180 0.820
38 H 0.427 0.573
39 H 0.179 0.821
40 H 0.153 0.847
41 H 0.044 0.956
42 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.890 -22.950 4.105 23.493
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.187 4.187
3 Si 0.780 3.220
4 H -0.195 1.195
5 H -0.216 1.216
6 H -0.192 1.192
7 C -0.575 4.575
8 H 0.080 0.920
9 C 0.019 3.981
10 H 0.007 0.993
11 C -0.143 4.143
12 C -0.166 4.166
13 C -0.027 4.027
14 N -0.325 5.325
15 C 0.336 3.664
16 O -0.457 6.457
17 C -0.144 4.144
18 C -0.024 4.024
19 N -0.153 5.153
20 C -0.175 4.175
21 C 0.016 3.984
22 C -0.082 4.082
23 N -0.287 5.287
24 C 0.317 3.683
25 O -0.416 6.416
26 C -0.291 4.291
27 S 0.233 5.767
28 C 0.004 3.996
29 H 0.069 0.931
30 H 0.069 0.931
31 H 0.079 0.921
32 H 0.068 0.932
33 H 0.121 0.879
34 H 0.121 0.879
35 H 0.111 0.889
36 H 0.186 0.814
37 H 0.197 0.803
38 H 0.268 0.732
39 H 0.196 0.804
40 H 0.171 0.829
41 H 0.062 0.938
42 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -5.117 -23.466 3.631 24.290
hybrid contribution 2.268 2.505 0.817 3.477
sum -2.849 -20.961 4.448 21.616
Atomic orbital electron populations
1.70049 1.07295 1.27362 1.50512 1.25842 0.95536 1.02736 0.94620
0.85667 0.78317 0.79016 0.79017 1.19511 1.21588 1.19230 1.21480
0.93299 0.91470 1.51216 0.92005 1.18902 0.93101 0.93733 0.92315
0.99349 1.21521 0.97686 0.94006 1.01104 1.21916 0.98988 0.98368
0.97291 1.22305 0.93626 0.86999 0.99765 1.48465 1.05433 1.09263
1.69346 1.18425 0.82478 0.88341 0.77116 1.90835 1.62885 1.40416
1.51540 1.20688 0.99070 0.93817 1.00824 1.22863 0.90513 0.93457
0.95596 1.67907 1.28247 0.99673 1.19516 1.23441 0.96167 1.00797
0.97052 1.18091 0.95720 0.89608 0.95020 1.21631 0.98844 0.89431
0.98301 1.43017 1.56008 1.03984 1.25715 1.20238 0.79077 0.81317
0.87683 1.90858 1.49133 1.52903 1.48710 1.24018 0.99857 1.05077
1.00140 1.86231 1.10771 0.91017 1.88634 1.21809 0.97349 0.82190
0.98296 0.93076 0.93059 0.92132 0.93226 0.87852 0.87887 0.88893
0.81381 0.80281 0.73245 0.80402 0.82948 0.93781 0.90245
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -53.83 11.39 21.45 0.24 -53.58 16
2 C 0.01 0.68 5.30 84.66 0.45 1.12 16
3 Si 0.95 43.10 29.54 68.60 2.03 45.12 16
4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16
5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16
6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16
7 C -0.54 -28.38 8.57 25.60 0.22 -28.16 16
8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16
9 C 0.04 1.84 2.25 -11.46 -0.03 1.82 16
10 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16
11 C -0.11 -3.76 5.11 30.62 0.16 -3.60 16
12 C -0.13 -3.39 6.08 30.67 0.19 -3.21 16
13 C 0.09 2.31 5.40 86.36 0.47 2.78 16
14 N -0.59 -21.41 2.97 -822.66 -2.45 -23.85 16
15 C 0.55 20.37 7.25 86.69 0.63 20.99 16
16 O -0.58 -27.59 16.47 -4.03 -0.07 -27.66 16
17 C -0.14 -3.63 5.01 -20.02 -0.10 -3.73 16
18 C 0.14 3.71 10.89 85.06 0.93 4.63 16
19 N -0.44 -10.94 10.30 -190.35 -1.96 -12.90 16
20 C 0.08 1.53 6.88 84.97 0.58 2.11 16
21 C 0.12 2.00 6.50 38.45 0.25 2.25 16
22 C -0.05 -0.96 7.28 22.86 0.17 -0.80 16
23 N -0.64 -8.29 5.13 -305.52 -1.57 -9.86 16
24 C 0.53 7.53 7.59 87.72 0.67 8.19 16
25 O -0.54 -11.01 17.80 -3.08 -0.05 -11.06 16
26 C -0.14 -1.29 6.46 71.08 0.46 -0.83 16
27 S -0.01 -0.08 22.56 -56.49 -1.27 -1.36 16
28 C 0.13 5.83 5.39 86.36 0.47 6.30 16
29 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16
30 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16
31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16
32 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16
33 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16
34 H 0.10 1.92 4.54 -2.39 -0.01 1.91 16
35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16
36 H 0.17 4.66 8.06 -2.91 -0.02 4.64 16
37 H 0.18 2.33 7.11 -2.91 -0.02 2.31 16
38 H 0.43 4.14 8.66 -92.70 -0.80 3.34 16
39 H 0.18 0.89 8.13 -2.39 -0.02 0.87 16
40 H 0.15 0.83 8.14 -2.40 -0.02 0.81 16
41 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16
42 H 0.08 4.50 5.13 -2.39 -0.01 4.48 16
Total: -1.00 -74.41 356.27 0.68 -73.73
By element:
Atomic # 1 Polarization: 11.25 SS G_CDS: 0.28 Total: 11.53 kcal
Atomic # 6 Polarization: 4.38 SS G_CDS: 5.50 Total: 9.88 kcal
Atomic # 7 Polarization: -94.46 SS G_CDS: -5.73 Total: -100.19 kcal
Atomic # 8 Polarization: -38.60 SS G_CDS: -0.12 Total: -38.72 kcal
Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal
Atomic # 16 Polarization: -0.08 SS G_CDS: -1.27 Total: -1.36 kcal
Total: -74.41 0.68 -73.73 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597903097.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.219 kcal
(2) G-P(sol) polarization free energy of solvation -74.406 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.507 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds