Wall clock time and date at job start Wed Apr 1 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.31028 * 125.25395 * 2 1 4 4 N 1.37287 * 115.38186 * 180.02562 * 3 2 1 5 5 C 1.35126 * 113.87194 * 0.02562 * 4 3 2 6 6 N 1.33682 * 121.39310 * 180.02562 * 5 4 3 7 7 C 1.31618 * 122.37380 * 359.96558 * 6 5 4 8 8 C 1.39966 * 119.29241 * 0.03509 * 7 6 5 9 9 C 1.46749 * 120.85904 * 179.97438 * 8 7 6 10 10 O 1.21695 * 119.99863 * 255.13637 * 9 8 7 11 11 N 1.34775 * 120.00204 * 75.14070 * 9 8 7 12 12 C 1.46928 * 120.62484 * 4.88942 * 11 9 8 13 13 C 1.53624 * 108.54083 * 126.37531 * 12 11 9 14 14 C 1.53042 * 109.24533 * 54.85135 * 13 12 11 15 15 C 1.53039 * 109.53797 * 298.51405 * 14 13 12 16 16 H 1.08999 * 109.49620 * 301.41013 * 15 14 13 17 17 C 1.50696 * 109.52280 * 181.32971 * 15 14 13 18 18 H 1.08004 * 120.00066 * 0.14654 * 17 15 14 19 19 C 1.37876 * 119.99952 * 180.14174 * 17 15 14 20 20 N 1.31511 * 120.00182 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00096 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46984 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46839 * 120.00114 * 21 19 17 24 24 H 1.48500 * 109.47322 * 240.00167 * 21 19 17 25 25 C 1.46920 * 120.63595 * 185.17503 * 11 9 8 26 26 C 1.36383 * 126.86223 * 180.02562 * 4 3 2 27 27 O 1.21874 * 120.30443 * 359.97438 * 26 4 3 28 28 S 1.71455 * 109.94558 * 0.02562 * 5 4 3 29 29 H 1.08997 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46559 * 300.01907 * 1 2 3 31 31 H 1.08998 * 109.47330 * 60.01460 * 1 2 3 32 32 H 1.08003 * 122.31491 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.35123 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.58658 * 246.20120 * 12 11 9 35 35 H 1.08991 * 109.59361 * 6.62882 * 12 11 9 36 36 H 1.09005 * 109.63306 * 294.85801 * 13 12 11 37 37 H 1.08999 * 109.43375 * 174.72575 * 13 12 11 38 38 H 1.08999 * 109.45902 * 178.48898 * 14 13 12 39 39 H 1.08998 * 109.45837 * 58.53207 * 14 13 12 40 40 H 0.97004 * 120.00534 * 179.97438 * 20 19 17 41 41 H 1.09011 * 109.58396 * 353.36482 * 25 11 9 42 42 H 1.08994 * 109.59381 * 113.79095 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2633 1.0700 0.0000 4 7 3.6159 0.8346 -0.0006 5 6 3.9428 -0.4765 -0.0016 6 7 5.2185 -0.8761 -0.0017 7 6 6.2233 -0.0260 -0.0015 8 6 5.9576 1.3482 -0.0005 9 6 7.0516 2.3263 0.0003 10 8 7.3250 2.9326 1.0195 11 7 7.7535 2.5533 -1.1276 12 6 7.3683 1.9099 -2.3911 13 6 7.2003 2.9983 -3.4622 14 6 8.4843 3.8269 -3.5451 15 6 8.7399 4.5106 -2.2000 16 1 7.8904 5.1450 -1.9471 17 6 9.9865 5.3524 -2.2918 18 1 10.5405 5.3978 -3.2178 19 6 10.4197 6.0647 -1.1936 20 7 9.7454 6.0091 -0.0659 21 14 11.9654 7.1076 -1.3071 22 1 12.5354 7.0005 -2.6741 23 1 11.6280 8.5253 -1.0216 24 1 12.9611 6.6265 -0.3160 25 6 8.9221 3.4437 -1.1159 26 6 4.6090 1.7693 -0.0002 27 8 4.3356 2.9570 0.0003 28 16 2.5204 -1.4339 -0.0025 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5141 0.8898 31 1 -0.3634 0.5136 -0.8901 32 1 1.8512 2.0683 -0.0004 33 1 7.2419 -0.3851 -0.0021 34 1 8.1459 1.2098 -2.6966 35 1 6.4265 1.3778 -2.2580 36 1 6.3652 3.6469 -3.1974 37 1 7.0063 2.5304 -4.4274 38 1 8.3788 4.5833 -4.3227 39 1 9.3231 3.1737 -3.7855 40 1 10.0504 6.5099 0.7069 41 1 9.0056 3.9241 -0.1409 42 1 9.8237 2.8662 -1.3194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:12 Heat of formation + Delta-G solvation = 7.515551 kcal Electronic energy + Delta-G solvation = -28359.769431 eV Core-core repulsion = 24432.335232 eV Total energy + Delta-G solvation = -3927.434199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.65569 -39.46277 -37.94095 -37.50570 -36.44945 -33.59054 -33.24481 -31.80377 -31.04159 -29.65471 -28.25186 -26.94717 -25.01212 -24.42232 -23.87741 -21.95858 -21.74311 -20.02916 -19.39529 -18.86547 -18.55931 -17.50425 -17.08690 -16.61470 -16.00122 -15.71399 -15.22212 -14.67833 -14.53489 -14.35654 -14.27798 -13.94475 -13.77352 -13.62900 -13.52782 -13.12856 -12.98398 -12.74070 -12.53708 -12.42646 -12.03919 -11.84286 -11.78406 -10.96988 -10.89002 -10.72430 -10.44399 -10.37678 -10.36783 -10.33340 -10.18081 -9.83243 -9.74860 -9.27444 -9.06333 -8.85039 -8.37677 -7.88568 -7.68178 -5.92672 -4.02300 -0.27870 0.18691 0.88694 0.91177 1.61891 1.80485 3.12656 3.28132 3.34788 3.42210 3.45314 3.73695 3.82544 4.02016 4.29490 4.45087 4.48044 4.79074 4.91158 4.92378 5.03785 5.27109 5.34882 5.35889 5.37445 5.47480 5.56506 5.70247 5.85651 5.99517 6.04701 6.23231 6.35845 6.65545 6.73512 6.90263 7.03726 7.17221 7.21495 7.34381 7.51260 7.70783 7.94550 8.06356 8.29411 8.44793 8.90378 9.02623 9.63066 11.12300 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.002729 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.621258 B =10259.465159 C =10372.286143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.213 4.213 3 C 0.063 3.937 4 N -0.452 5.452 5 C 0.270 3.730 6 N -0.516 5.516 7 C 0.216 3.784 8 C -0.297 4.297 9 C 0.580 3.420 10 O -0.520 6.520 11 N -0.596 5.596 12 C 0.114 3.886 13 C -0.133 4.133 14 C -0.109 4.109 15 C 0.039 3.961 16 H 0.030 0.970 17 C -0.520 4.520 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.878 5.878 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.114 3.886 26 C 0.540 3.460 27 O -0.493 6.493 28 S 0.260 5.740 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.196 0.804 33 H 0.184 0.816 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.263 0.737 41 H 0.124 0.876 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.702 -19.635 -2.072 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.332 4.332 3 C -0.064 4.064 4 N -0.162 5.162 5 C -0.093 4.093 6 N -0.244 5.244 7 C 0.065 3.935 8 C -0.313 4.313 9 C 0.364 3.636 10 O -0.395 6.395 11 N -0.328 5.328 12 C -0.010 4.010 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.048 0.952 17 C -0.559 4.559 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.006 4.006 26 C 0.340 3.660 27 O -0.366 6.366 28 S 0.512 5.488 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.213 0.787 33 H 0.201 0.799 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.679 -20.524 -1.334 28.466 hybrid contribution 1.061 2.830 -0.053 3.023 sum -18.618 -17.694 -1.387 25.722 Atomic orbital electron populations 1.20316 0.84665 1.04024 1.04241 1.24068 1.02217 0.94768 1.12191 1.20952 0.80799 1.02802 1.01860 1.45322 1.08108 1.08388 1.54372 1.25710 1.00983 0.85670 0.96978 1.68163 0.94267 1.35565 1.26404 1.23075 0.97974 0.87472 0.84977 1.21588 0.93057 0.96444 1.20240 1.17069 0.80853 0.81448 0.84210 1.90843 1.67823 1.48290 1.32557 1.48435 1.30954 1.46590 1.06851 1.21653 0.99135 0.95171 0.85057 1.22013 1.00349 0.97809 0.96971 1.21616 0.94570 0.97975 1.00499 1.18975 0.97639 0.92543 0.88861 0.95217 1.21100 1.09766 1.27420 0.97589 0.92298 1.25075 0.97003 0.96510 0.95535 1.69914 1.38626 1.41291 1.01705 0.86546 0.83296 0.80226 0.77985 1.19815 1.21062 1.20983 1.22334 0.82344 0.89614 1.06333 1.17152 0.84263 0.85268 0.79305 1.91008 1.82388 1.14277 1.48924 1.84209 0.86199 1.02768 1.75583 0.90254 0.89483 0.89463 0.78703 0.79910 0.91780 0.92153 0.92186 0.92353 0.93010 0.93106 0.92697 0.85857 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.18 10.37 36.01 0.37 0.19 16 2 C -0.21 -1.30 6.43 -36.03 -0.23 -1.53 16 3 C 0.06 0.58 10.38 -16.83 -0.17 0.41 16 4 N -0.45 -5.94 2.82 -67.14 -0.19 -6.13 16 5 C 0.27 3.09 8.07 -87.58 -0.71 2.38 16 6 N -0.52 -6.50 10.39 -13.58 -0.14 -6.64 16 7 C 0.22 3.00 10.64 -17.00 -0.18 2.82 16 8 C -0.30 -5.36 3.81 -104.65 -0.40 -5.76 16 9 C 0.58 13.12 6.71 -12.82 -0.09 13.03 16 10 O -0.52 -14.21 16.53 5.19 0.09 -14.13 16 11 N -0.60 -12.92 2.97 -174.02 -0.52 -13.44 16 12 C 0.11 1.95 6.26 -3.49 -0.02 1.93 16 13 C -0.13 -2.37 6.10 -26.39 -0.16 -2.53 16 14 C -0.11 -2.27 5.11 -26.69 -0.14 -2.41 16 15 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 16 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 17 C -0.52 -14.50 8.56 -34.44 -0.29 -14.79 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.88 -26.60 11.39 55.43 0.63 -25.96 16 21 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 C 0.11 2.87 5.41 -3.71 -0.02 2.85 16 26 C 0.54 9.71 7.55 -14.37 -0.11 9.60 16 27 O -0.49 -10.74 16.93 5.03 0.09 -10.66 16 28 S 0.26 1.73 23.13 -107.50 -2.49 -0.76 16 29 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.20 1.63 8.00 -52.48 -0.42 1.21 16 33 H 0.18 2.08 8.06 -52.48 -0.42 1.66 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.94 6.14 -51.93 -0.32 0.62 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.12 3.65 5.11 -51.92 -0.27 3.38 16 42 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -37.73 362.73 -9.73 -47.46 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -5.20 Total: -0.61 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -2.45 Total: 8.65 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.22 Total: -52.18 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.17 Total: -24.79 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.49 Total: -0.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.73 -9.73 -47.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.978 kcal (2) G-P(sol) polarization free energy of solvation -37.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds