Wall clock time and date at job start Wed Apr 1 2020 05:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.31028 * 125.25395 * 2 1 4 4 N 1.37287 * 115.38186 * 180.02562 * 3 2 1 5 5 C 1.35126 * 113.87194 * 0.02562 * 4 3 2 6 6 N 1.33682 * 121.39310 * 180.02562 * 5 4 3 7 7 C 1.31618 * 122.37380 * 359.96558 * 6 5 4 8 8 C 1.39966 * 119.29241 * 0.03509 * 7 6 5 9 9 C 1.46749 * 120.85904 * 179.97438 * 8 7 6 10 10 O 1.21695 * 119.99863 * 255.13637 * 9 8 7 11 11 N 1.34775 * 120.00204 * 75.14070 * 9 8 7 12 12 C 1.46928 * 120.62484 * 4.88942 * 11 9 8 13 13 C 1.53624 * 108.54083 * 126.37531 * 12 11 9 14 14 C 1.53042 * 109.24533 * 54.85135 * 13 12 11 15 15 C 1.53039 * 109.53797 * 298.51405 * 14 13 12 16 16 H 1.08999 * 109.49620 * 301.41013 * 15 14 13 17 17 C 1.50696 * 109.52280 * 181.32971 * 15 14 13 18 18 H 1.08004 * 120.00066 * 0.14654 * 17 15 14 19 19 C 1.37876 * 119.99952 * 180.14174 * 17 15 14 20 20 N 1.31511 * 120.00182 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00096 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46984 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46839 * 120.00114 * 21 19 17 24 24 H 1.48500 * 109.47322 * 240.00167 * 21 19 17 25 25 C 1.46920 * 120.63595 * 185.17503 * 11 9 8 26 26 C 1.36383 * 126.86223 * 180.02562 * 4 3 2 27 27 O 1.21874 * 120.30443 * 359.97438 * 26 4 3 28 28 S 1.71455 * 109.94558 * 0.02562 * 5 4 3 29 29 H 1.08997 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46559 * 300.01907 * 1 2 3 31 31 H 1.08998 * 109.47330 * 60.01460 * 1 2 3 32 32 H 1.08003 * 122.31491 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.35123 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.58658 * 246.20120 * 12 11 9 35 35 H 1.08991 * 109.59361 * 6.62882 * 12 11 9 36 36 H 1.09005 * 109.63306 * 294.85801 * 13 12 11 37 37 H 1.08999 * 109.43375 * 174.72575 * 13 12 11 38 38 H 1.08999 * 109.45902 * 178.48898 * 14 13 12 39 39 H 1.08998 * 109.45837 * 58.53207 * 14 13 12 40 40 H 0.97004 * 120.00534 * 179.97438 * 20 19 17 41 41 H 1.09011 * 109.58396 * 353.36482 * 25 11 9 42 42 H 1.08994 * 109.59381 * 113.79095 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2633 1.0700 0.0000 4 7 3.6159 0.8346 -0.0006 5 6 3.9428 -0.4765 -0.0016 6 7 5.2185 -0.8761 -0.0017 7 6 6.2233 -0.0260 -0.0015 8 6 5.9576 1.3482 -0.0005 9 6 7.0516 2.3263 0.0003 10 8 7.3250 2.9326 1.0195 11 7 7.7535 2.5533 -1.1276 12 6 7.3683 1.9099 -2.3911 13 6 7.2003 2.9983 -3.4622 14 6 8.4843 3.8269 -3.5451 15 6 8.7399 4.5106 -2.2000 16 1 7.8904 5.1450 -1.9471 17 6 9.9865 5.3524 -2.2918 18 1 10.5405 5.3978 -3.2178 19 6 10.4197 6.0647 -1.1936 20 7 9.7454 6.0091 -0.0659 21 14 11.9654 7.1076 -1.3071 22 1 12.5354 7.0005 -2.6741 23 1 11.6280 8.5253 -1.0216 24 1 12.9611 6.6265 -0.3160 25 6 8.9221 3.4437 -1.1159 26 6 4.6090 1.7693 -0.0002 27 8 4.3356 2.9570 0.0003 28 16 2.5204 -1.4339 -0.0025 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5141 0.8898 31 1 -0.3634 0.5136 -0.8901 32 1 1.8512 2.0683 -0.0004 33 1 7.2419 -0.3851 -0.0021 34 1 8.1459 1.2098 -2.6966 35 1 6.4265 1.3778 -2.2580 36 1 6.3652 3.6469 -3.1974 37 1 7.0063 2.5304 -4.4274 38 1 8.3788 4.5833 -4.3227 39 1 9.3231 3.1737 -3.7855 40 1 10.0504 6.5099 0.7069 41 1 9.0056 3.9241 -0.1409 42 1 9.8237 2.8662 -1.3194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:11 Heat of formation + Delta-G solvation = -19.060984 kcal Electronic energy + Delta-G solvation = -28360.921876 eV Core-core repulsion = 24432.335232 eV Total energy + Delta-G solvation = -3928.586644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.70262 -41.04878 -39.25849 -38.58232 -38.13599 -35.33818 -34.23101 -33.55332 -32.36064 -31.46611 -28.89265 -28.13179 -27.00144 -25.98317 -24.89883 -23.54616 -22.95592 -21.53283 -20.33703 -20.13854 -19.91579 -18.85139 -18.34934 -18.18690 -17.66751 -17.09527 -16.66604 -16.49833 -15.72105 -15.50909 -15.31920 -15.21722 -15.11834 -14.82747 -14.58600 -14.37669 -14.35888 -14.30417 -13.84607 -13.53291 -13.46819 -13.27754 -12.92375 -12.71770 -12.40001 -12.31932 -12.24110 -11.99292 -11.90116 -11.68950 -11.56486 -11.17038 -11.10988 -10.99903 -10.79164 -10.59201 -10.52235 -9.47455 -8.88732 -8.10985 -6.30347 -1.27244 -0.59950 0.02110 0.15427 0.61280 0.78905 1.39398 1.39564 1.53173 1.63475 1.99167 2.28610 2.41722 2.85797 2.95360 3.16519 3.55894 3.67856 3.84957 3.95387 3.96400 4.08684 4.21135 4.29542 4.49902 4.53808 4.66409 4.72682 4.76230 4.77401 4.80936 4.84852 5.01810 5.03823 5.19927 5.21296 5.21591 5.31512 5.52694 5.60195 5.86128 5.97401 6.14432 6.29488 6.31974 6.56917 6.83659 7.22803 7.40532 8.92749 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.002729 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.621258 B =10259.465159 C =10372.286143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.174 4.174 3 C 0.013 3.987 4 N -0.447 5.447 5 C 0.245 3.755 6 N -0.522 5.522 7 C 0.262 3.738 8 C -0.357 4.357 9 C 0.579 3.421 10 O -0.590 6.590 11 N -0.598 5.598 12 C 0.111 3.889 13 C -0.127 4.127 14 C -0.101 4.101 15 C 0.036 3.964 16 H -0.028 1.028 17 C -0.532 4.532 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.919 5.919 21 Si 0.964 3.036 22 H -0.256 1.256 23 H -0.285 1.285 24 H -0.280 1.280 25 C 0.125 3.875 26 C 0.535 3.465 27 O -0.561 6.561 28 S 0.377 5.623 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.195 0.805 33 H 0.208 0.792 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.107 0.893 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.259 0.741 41 H 0.073 0.927 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.938 -24.187 -4.183 32.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.293 4.293 3 C -0.111 4.111 4 N -0.154 5.154 5 C -0.115 4.115 6 N -0.250 5.250 7 C 0.105 3.895 8 C -0.374 4.374 9 C 0.366 3.634 10 O -0.471 6.471 11 N -0.329 5.329 12 C -0.011 4.011 13 C -0.165 4.165 14 C -0.139 4.139 15 C 0.017 3.983 16 H -0.009 1.009 17 C -0.571 4.571 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.558 5.558 21 Si 0.789 3.211 22 H -0.180 1.180 23 H -0.212 1.212 24 H -0.206 1.206 25 C 0.003 3.997 26 C 0.338 3.662 27 O -0.440 6.440 28 S 0.631 5.369 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.212 0.788 33 H 0.224 0.776 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.126 0.874 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.033 -25.173 -3.509 33.637 hybrid contribution 1.350 3.929 0.607 4.199 sum -20.683 -21.244 -2.902 29.791 Atomic orbital electron populations 1.20650 0.81289 1.06192 1.05658 1.24768 1.04010 0.93904 1.06619 1.21216 0.79460 1.04384 1.06086 1.45123 1.08882 1.08350 1.52999 1.26859 1.02620 0.85988 0.96040 1.68311 0.94471 1.34469 1.27754 1.23349 0.99512 0.85632 0.80989 1.20897 0.91621 0.96787 1.28069 1.17738 0.81204 0.81272 0.83153 1.90769 1.69894 1.51377 1.35034 1.48456 1.29856 1.45931 1.08685 1.21979 1.01366 0.95252 0.82455 1.21983 0.97493 0.97381 0.99616 1.21494 0.96974 0.98413 0.97002 1.18918 0.94846 0.92372 0.92147 1.00937 1.21531 1.10260 1.27541 0.97747 0.91388 1.26018 1.00424 0.97993 0.95045 1.70157 1.40701 1.42390 1.02530 0.85414 0.79051 0.77929 0.78707 1.17955 1.21153 1.20591 1.21783 0.84289 0.90134 1.03460 1.17091 0.85159 0.84970 0.78952 1.90949 1.83457 1.16775 1.52843 1.84066 0.82063 1.00248 1.70546 0.87612 0.88099 0.87876 0.78813 0.77555 0.88281 0.90082 0.94968 0.87430 0.92887 0.91180 0.93216 0.90822 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.02 10.37 71.24 0.74 0.76 16 2 C -0.17 -1.40 6.43 25.62 0.16 -1.23 16 3 C 0.01 0.23 10.38 83.77 0.87 1.10 16 4 N -0.45 -11.62 2.82 -483.56 -1.36 -12.98 16 5 C 0.24 4.99 8.07 179.28 1.45 6.43 16 6 N -0.52 -11.96 10.39 -196.86 -2.04 -14.00 16 7 C 0.26 7.12 10.64 85.14 0.91 8.03 16 8 C -0.36 -13.62 3.81 -19.89 -0.08 -13.69 16 9 C 0.58 28.49 6.71 86.47 0.58 29.07 16 10 O -0.59 -35.96 16.53 -4.33 -0.07 -36.03 16 11 N -0.60 -27.51 2.97 -822.70 -2.44 -29.95 16 12 C 0.11 3.75 6.26 86.51 0.54 4.29 16 13 C -0.13 -4.43 6.10 30.82 0.19 -4.24 16 14 C -0.10 -4.24 5.11 30.62 0.16 -4.08 16 15 C 0.04 2.00 2.25 -11.46 -0.03 1.98 16 16 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 17 C -0.53 -30.85 8.56 25.60 0.22 -30.63 16 18 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 19 C 0.00 0.24 5.30 84.65 0.45 0.69 16 20 N -0.92 -59.88 11.39 21.45 0.24 -59.63 16 21 Si 0.96 46.29 29.54 68.60 2.03 48.31 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 25 C 0.13 6.78 5.41 86.36 0.47 7.25 16 26 C 0.53 20.53 7.55 84.74 0.64 21.17 16 27 O -0.56 -27.09 16.93 -4.91 -0.08 -27.17 16 28 S 0.38 3.07 23.13 -56.49 -1.31 1.76 16 29 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.19 3.35 8.00 -2.91 -0.02 3.32 16 33 H 0.21 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.08 2.44 6.14 -2.39 -0.01 2.43 16 36 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 41 H 0.07 4.79 5.11 -2.38 -0.01 4.78 16 42 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -96.77 362.73 3.29 -93.48 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.06 Total: 9.34 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 7.26 Total: 26.88 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -5.60 Total: -116.57 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: -0.15 Total: -63.21 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.76 kcal Total: -96.77 3.29 -93.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.420 kcal (2) G-P(sol) polarization free energy of solvation -96.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds