Wall clock time and date at job start Wed Apr 1 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38618 * 120.45205 * 2 1 4 4 C 1.38572 * 118.40607 * 179.97438 * 3 2 1 5 5 N 1.32352 * 119.10242 * 359.73362 * 4 3 2 6 6 C 1.31778 * 120.81665 * 0.53926 * 5 4 3 7 7 C 1.50708 * 119.12035 * 179.71714 * 6 5 4 8 8 H 1.09004 * 109.46644 * 164.73364 * 7 6 5 9 9 C 1.52995 * 109.46930 * 284.73173 * 7 6 5 10 10 N 1.46496 * 109.47009 * 44.73758 * 7 6 5 11 11 S 1.65601 * 119.99915 * 144.72493 * 10 7 6 12 12 O 1.42102 * 106.40158 * 178.81348 * 11 10 7 13 13 O 1.42108 * 106.39944 * 311.73058 * 11 10 7 14 14 C 1.76194 * 107.22092 * 65.27298 * 11 10 7 15 15 C 1.38665 * 119.87371 * 269.72979 * 14 11 10 16 16 C 1.38609 * 120.49642 * 179.71875 * 15 14 11 17 17 C 1.37637 * 120.25181 * 0.55357 * 16 15 14 18 18 C 1.40699 * 119.74454 * 359.72473 * 17 16 15 19 19 C 1.41393 * 120.24447 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99727 * 204.37490 * 19 18 17 21 21 C 1.39949 * 120.00149 * 24.38062 * 19 18 17 22 22 N 1.30821 * 119.99907 * 17.86157 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 197.86969 * 21 19 18 24 24 H 1.48504 * 109.47493 * 89.99372 * 23 21 19 25 25 H 1.48505 * 109.47118 * 209.99494 * 23 21 19 26 26 H 1.48503 * 109.47417 * 329.99542 * 23 21 19 27 27 C 1.37601 * 119.87707 * 89.99790 * 14 11 10 28 28 N 1.31808 * 121.75497 * 359.44583 * 6 5 4 29 29 H 1.08997 * 109.46903 * 270.02009 * 1 2 3 30 30 H 1.08997 * 109.46886 * 30.01549 * 1 2 3 31 31 H 1.08996 * 109.47024 * 150.02238 * 1 2 3 32 32 H 1.08006 * 120.79579 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.45214 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.47803 * 300.00179 * 9 7 6 35 35 H 1.09004 * 109.47301 * 60.00594 * 9 7 6 36 36 H 1.09010 * 109.46764 * 179.97438 * 9 7 6 37 37 H 0.96995 * 119.99513 * 324.99523 * 10 7 6 38 38 H 1.07997 * 119.74929 * 359.97438 * 15 14 11 39 39 H 1.08000 * 119.87520 * 180.24978 * 16 15 14 40 40 H 1.08000 * 120.13179 * 179.74540 * 17 16 15 41 41 H 0.97001 * 119.99674 * 180.02562 * 22 21 19 42 42 H 1.07993 * 120.12148 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1455 0.0005 5 7 4.1964 -0.0332 0.0064 6 6 3.4956 -1.1492 0.0011 7 6 4.2206 -2.4704 0.0016 8 1 3.5250 -3.2664 0.2675 9 6 4.7937 -2.7382 -1.3915 10 7 5.3113 -2.4285 0.9787 11 16 5.7033 -3.7870 1.8407 12 8 6.8021 -3.4331 2.6695 13 8 4.4820 -4.3060 2.3489 14 6 6.3099 -4.9770 0.6917 15 6 5.4324 -5.8671 0.0912 16 6 5.8947 -6.8047 -0.8189 17 6 7.2343 -6.8693 -1.1280 18 6 8.1347 -5.9749 -0.5206 19 6 9.5131 -6.0315 -0.8308 20 1 10.2409 -5.6571 -0.1262 21 6 9.9341 -6.5724 -2.0509 22 7 9.0843 -6.7015 -3.0372 23 14 11.7093 -7.1102 -2.2711 24 1 11.8478 -8.5349 -1.8755 25 1 12.1018 -6.9514 -3.6945 26 1 12.5900 -6.2720 -1.4184 27 6 7.6533 -5.0233 0.3976 28 7 2.1776 -1.1407 0.0006 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6900 2.1419 -0.0004 33 1 4.1746 2.0564 0.0010 34 1 3.9821 -2.7693 -2.1185 35 1 5.4893 -1.9422 -1.6574 36 1 5.3185 -3.6936 -1.3910 37 1 5.8013 -1.6040 1.1234 38 1 4.3802 -5.8268 0.3315 39 1 5.2017 -7.4905 -1.2836 40 1 7.5930 -7.6033 -1.8344 41 1 9.3761 -7.0768 -3.8827 42 1 8.3355 -4.3316 0.8694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598735739.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:28 Heat of formation + Delta-G solvation = -35.272736 kcal Electronic energy + Delta-G solvation = -27786.548372 eV Core-core repulsion = 23857.258734 eV Total energy + Delta-G solvation = -3929.289639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.15395 -39.45525 -38.39581 -37.55253 -36.97246 -35.65452 -35.24704 -33.37193 -31.89952 -31.59576 -30.69125 -29.37019 -27.32238 -25.95952 -24.25947 -23.65374 -22.80498 -22.40362 -20.70905 -19.73909 -18.97987 -18.41780 -17.82764 -17.61806 -16.89337 -16.75511 -16.54810 -16.27237 -16.12872 -15.70191 -15.25544 -15.04992 -14.73198 -14.55198 -14.28907 -14.09033 -13.97128 -13.69400 -13.42802 -13.26259 -13.24457 -13.14265 -13.11067 -13.04808 -12.86655 -12.74995 -12.60411 -12.49547 -12.19751 -11.78503 -11.58080 -11.53296 -11.37927 -11.12591 -10.71660 -10.36550 -10.25127 -9.82286 -9.52875 -8.71459 -6.42588 -0.60535 -0.11492 0.13512 0.41544 0.87059 1.38271 1.47258 1.50717 2.00247 2.18744 2.55286 2.66881 2.70032 2.76992 3.17240 3.42917 3.55529 3.62338 3.80818 4.09174 4.10247 4.20581 4.25832 4.35143 4.44805 4.48435 4.64452 4.75850 4.77214 4.84097 4.87677 4.93197 5.03220 5.09140 5.12071 5.22515 5.26377 5.42598 5.49434 5.58972 5.91359 5.95885 5.98175 6.08035 6.12989 6.54993 6.81960 6.87029 7.08995 8.26222 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.002890 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.566491 B = 9686.514229 C =10046.699805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.156 3.844 3 C -0.215 4.215 4 C 0.140 3.860 5 N -0.534 5.534 6 C 0.308 3.692 7 C 0.222 3.778 8 H 0.111 0.889 9 C -0.162 4.162 10 N -1.098 6.098 11 S 2.716 3.284 12 O -0.991 6.991 13 O -0.984 6.984 14 C -0.631 4.631 15 C -0.143 4.143 16 C -0.119 4.119 17 C -0.138 4.138 18 C 0.065 3.935 19 C -0.498 4.498 20 H 0.077 0.923 21 C 0.039 3.961 22 N -0.819 5.819 23 Si 0.981 3.019 24 H -0.262 1.262 25 H -0.266 1.266 26 H -0.261 1.261 27 C -0.140 4.140 28 N -0.537 5.537 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.190 0.810 33 H 0.204 0.796 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.427 0.573 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.291 0.709 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 14.845 -0.019 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.011 3.989 3 C -0.237 4.237 4 C -0.024 4.024 5 N -0.249 5.249 6 C 0.038 3.962 7 C 0.113 3.887 8 H 0.129 0.871 9 C -0.221 4.221 10 N -0.859 5.859 11 S 2.809 3.191 12 O -0.982 6.982 13 O -0.974 6.974 14 C -0.722 4.722 15 C -0.164 4.164 16 C -0.138 4.138 17 C -0.158 4.158 18 C 0.062 3.938 19 C -0.527 4.527 20 H 0.095 0.905 21 C -0.177 4.177 22 N -0.445 5.445 23 Si 0.802 3.198 24 H -0.187 1.187 25 H -0.190 1.190 26 H -0.185 1.185 27 C -0.161 4.161 28 N -0.253 5.253 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.095 0.905 32 H 0.207 0.793 33 H 0.220 0.780 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.264 0.736 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.686 13.684 0.637 19.364 hybrid contribution 1.044 0.400 -0.853 1.406 sum -12.642 14.084 -0.217 18.927 Atomic orbital electron populations 1.20910 0.85279 1.05231 1.04659 1.22497 0.99384 0.88040 0.89025 1.23201 0.96201 1.01489 1.02775 1.23948 0.93436 0.96075 0.88985 1.68066 1.42540 0.99474 1.14866 1.22814 0.87028 0.94223 0.92173 1.19349 0.86715 0.92531 0.90080 0.87073 1.22258 1.02012 1.03431 0.94418 1.55294 1.45897 1.27922 1.56769 1.00852 0.72376 0.72725 0.73097 1.93507 1.55035 1.83626 1.65998 1.93503 1.46124 1.79884 1.77915 1.30020 1.02693 1.18407 1.21039 1.20423 0.98048 0.98247 0.99653 1.21108 0.95503 0.99078 0.98085 1.21640 0.93285 0.99157 1.01688 1.17997 0.94314 0.90301 0.91217 1.19842 0.92645 1.37500 1.02699 0.90525 1.26687 1.04340 0.92426 0.94200 1.69808 1.38843 1.32559 1.03243 0.85211 0.76590 0.79517 0.78496 1.18668 1.19028 1.18492 1.20810 0.92887 1.00002 1.02381 1.68035 1.09204 1.32642 1.15429 0.88672 0.87107 0.90531 0.79309 0.77959 0.90235 0.91374 0.91294 0.73556 0.85128 0.85464 0.86880 0.89776 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.22 71.23 0.73 -0.34 16 2 C 0.16 2.83 6.82 42.58 0.29 3.12 16 3 C -0.22 -2.81 9.86 22.44 0.22 -2.59 16 4 C 0.14 2.31 11.30 84.69 0.96 3.27 16 5 N -0.53 -13.35 9.64 -187.85 -1.81 -15.16 16 6 C 0.31 8.64 6.60 138.75 0.92 9.56 16 7 C 0.22 6.80 3.31 44.25 0.15 6.95 16 8 H 0.11 3.46 7.47 -2.38 -0.02 3.45 16 9 C -0.16 -4.89 9.50 71.98 0.68 -4.20 16 10 N -1.10 -35.59 5.46 -172.52 -0.94 -36.53 16 11 S 2.72 105.60 5.72 -56.49 -0.32 105.28 16 12 O -0.99 -43.20 17.27 -128.00 -2.21 -45.41 16 13 O -0.98 -40.63 16.59 -128.00 -2.12 -42.75 16 14 C -0.63 -27.57 5.07 22.22 0.11 -27.46 16 15 C -0.14 -5.99 8.63 22.46 0.19 -5.79 16 16 C -0.12 -5.18 10.02 22.22 0.22 -4.95 16 17 C -0.14 -6.92 8.70 22.73 0.20 -6.72 16 18 C 0.06 3.44 5.58 -21.29 -0.12 3.32 16 19 C -0.50 -26.38 9.05 23.46 0.21 -26.17 16 20 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 21 C 0.04 1.92 5.14 85.26 0.44 2.35 16 22 N -0.82 -40.82 10.95 21.83 0.24 -40.58 16 23 Si 0.98 37.37 29.59 68.60 2.03 39.40 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 25 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 26 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 27 C -0.14 -6.87 9.26 22.73 0.21 -6.66 16 28 N -0.54 -14.05 10.26 -176.01 -1.81 -15.86 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.11 0.45 8.10 -2.39 -0.02 0.43 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.07 2.39 6.23 -2.38 -0.01 2.37 16 37 H 0.43 12.69 8.26 -96.75 -0.80 11.89 16 38 H 0.13 4.81 7.59 -2.91 -0.02 4.79 16 39 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 40 H 0.11 5.84 6.15 -2.91 -0.02 5.82 16 41 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 42 H 0.11 5.23 7.60 -2.91 -0.02 5.21 16 Total: -1.00 -70.50 370.22 -1.27 -71.76 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.27 Total: 36.17 kcal Atomic # 6 Polarization: -61.74 SS G_CDS: 5.41 Total: -56.33 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -4.32 Total: -108.13 kcal Atomic # 8 Polarization: -83.83 SS G_CDS: -4.33 Total: -88.16 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Atomic # 16 Polarization: 105.60 SS G_CDS: -0.32 Total: 105.28 kcal Total: -70.50 -1.27 -71.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598735739.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.492 kcal (2) G-P(sol) polarization free energy of solvation -70.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds