Wall clock time and date at job start Wed Apr 1 2020 04:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86796 * 120.00206 * 2 1 4 4 H 1.48503 * 109.47442 * 269.99901 * 3 2 1 5 5 H 1.48504 * 109.47214 * 30.00094 * 3 2 1 6 6 H 1.48501 * 109.46980 * 149.99872 * 3 2 1 7 7 C 1.39950 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00317 * 169.37564 * 7 2 1 9 9 C 1.41395 * 119.99664 * 349.37210 * 7 2 1 10 10 C 1.40738 * 120.25095 * 331.17775 * 9 7 2 11 11 C 1.37587 * 119.74643 * 180.32072 * 10 9 7 12 12 C 1.38655 * 120.25047 * 359.66511 * 11 10 9 13 13 C 1.38618 * 120.49978 * 0.02562 * 12 11 10 14 14 C 1.37636 * 120.25009 * 0.02562 * 13 12 11 15 15 S 1.76195 * 120.12822 * 179.97438 * 14 13 12 16 16 O 1.42101 * 106.39970 * 133.70643 * 15 14 13 17 17 O 1.42099 * 106.40068 * 0.79163 * 15 14 13 18 18 N 1.65598 * 107.22209 * 247.24774 * 15 14 13 19 19 C 1.46496 * 119.99808 * 64.66683 * 18 15 14 20 20 H 1.08995 * 109.71511 * 338.98156 * 19 18 15 21 21 C 1.53375 * 109.71727 * 218.33093 * 19 18 15 22 22 C 1.53046 * 109.74516 * 189.65888 * 21 19 18 23 23 C 1.53387 * 109.71701 * 71.71699 * 22 21 19 24 24 C 1.50882 * 108.19673 * 309.44024 * 23 22 21 25 25 C 1.34574 * 128.32885 * 196.70403 * 24 23 22 26 26 N 1.35202 * 107.61747 * 179.83347 * 25 24 23 27 27 H 0.96995 * 126.00634 * 180.02562 * 26 25 24 28 28 N 1.40320 * 107.98958 * 0.03309 * 26 25 24 29 29 C 1.30125 * 108.12587 * 0.03448 * 28 26 25 30 30 H 0.97001 * 120.00018 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.12020 * 0.02562 * 10 9 7 32 32 H 1.08002 * 119.87283 * 179.68347 * 11 10 9 33 33 H 1.08002 * 119.75328 * 180.02562 * 12 11 10 34 34 H 1.07998 * 119.87012 * 180.02562 * 13 12 11 35 35 H 0.96998 * 120.00126 * 244.67195 * 18 15 14 36 36 H 1.09003 * 109.42167 * 309.74626 * 21 19 18 37 37 H 1.09000 * 109.42264 * 69.57883 * 21 19 18 38 38 H 1.09004 * 109.43853 * 311.64005 * 22 21 19 39 39 H 1.08995 * 109.38587 * 191.76286 * 22 21 19 40 40 H 1.09003 * 109.72010 * 189.76512 * 23 22 21 41 41 H 1.09001 * 109.75350 * 69.13916 * 23 22 21 42 42 H 1.07989 * 126.19095 * 359.79328 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5397 1.4400 0.7001 7 6 2.0079 -1.2120 -0.0005 8 1 3.0740 -1.2201 -0.1730 9 6 1.3190 -2.4261 0.2248 10 6 0.1527 -2.4439 1.0123 11 6 -0.5057 -3.6322 1.2302 12 6 -0.0282 -4.8080 0.6717 13 6 1.1159 -4.8013 -0.1109 14 6 1.7913 -3.6244 -0.3415 15 16 3.2456 -3.6197 -1.3361 16 8 3.1106 -2.5308 -2.2391 17 8 3.4458 -4.9610 -1.7605 18 7 4.5177 -3.2486 -0.3430 19 6 4.8943 -4.1632 0.7377 20 1 4.0521 -4.8106 0.9817 21 6 5.3058 -3.3585 1.9768 22 6 5.9246 -4.2936 3.0185 23 6 7.3097 -4.7517 2.5448 24 6 7.1778 -5.2684 1.1333 25 6 8.0396 -6.0367 0.4419 26 7 7.5040 -6.2545 -0.7802 27 1 7.9039 -6.7765 -1.4933 28 7 6.2681 -5.5924 -0.8359 29 6 6.0732 -5.0019 0.3072 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2213 -1.5291 1.4477 32 1 -1.3980 -3.6490 1.8384 33 1 -0.5516 -5.7362 0.8477 34 1 1.4786 -5.7230 -0.5413 35 1 5.0134 -2.4256 -0.4767 36 1 6.0352 -2.6006 1.6911 37 1 4.4273 -2.8731 2.4019 38 1 5.2814 -5.1633 3.1529 39 1 6.0223 -3.7649 3.9666 40 1 7.6765 -5.5463 3.1946 41 1 8.0028 -3.9106 2.5652 42 1 8.9877 -6.4111 0.7985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601372622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:16 Heat of formation + Delta-G solvation = 9.323257 kcal Electronic energy + Delta-G solvation = -29151.535651 eV Core-core repulsion = 25224.179840 eV Total energy + Delta-G solvation = -3927.355811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30478 -37.56256 -37.01020 -36.02388 -34.66260 -33.97915 -33.77769 -30.90216 -30.17452 -29.91736 -29.50243 -27.48117 -25.49877 -23.93414 -21.71117 -21.60729 -21.11607 -20.78010 -18.94208 -18.46582 -17.65816 -17.44928 -16.69793 -16.14624 -15.66735 -15.31530 -15.05678 -14.40892 -14.28700 -14.09655 -13.86375 -13.45193 -13.21921 -13.17898 -12.99818 -12.71598 -12.65308 -11.93058 -11.90698 -11.68605 -11.42356 -11.22051 -11.12631 -10.91826 -10.89603 -10.84795 -10.82634 -10.69875 -10.61650 -10.46122 -10.03985 -9.86599 -9.50280 -9.39573 -9.28789 -8.81152 -8.32693 -7.99156 -7.55453 -6.98308 -4.71817 1.62067 2.06372 2.38544 2.77229 2.87713 2.99359 2.99739 3.02930 3.15384 3.80841 4.02178 4.45364 4.58962 4.76203 4.87947 5.02502 5.06287 5.24840 5.36151 5.41465 5.50752 5.61758 5.70669 5.77316 5.83772 5.91700 6.09013 6.11188 6.18970 6.28550 6.29741 6.36418 6.44500 6.56320 6.75851 6.82272 7.00043 7.13022 7.35038 7.40914 7.53030 7.58663 7.72496 7.84882 7.91332 7.93908 8.33118 8.54723 8.69146 9.94356 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.004569 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.134595 B = 6126.772586 C = 6668.083618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.081 3.919 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.443 4.443 8 H 0.087 0.913 9 C 0.186 3.814 10 C -0.158 4.158 11 C -0.077 4.077 12 C -0.250 4.250 13 C -0.004 4.004 14 C -0.776 4.776 15 S 2.696 3.304 16 O -0.967 6.967 17 O -0.980 6.980 18 N -1.110 6.110 19 C 0.246 3.754 20 H 0.103 0.897 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.039 4.039 24 C -0.233 4.233 25 C 0.049 3.951 26 N -0.491 5.491 27 H 0.436 0.564 28 N -0.244 5.244 29 C 0.065 3.935 30 H 0.287 0.713 31 H 0.126 0.874 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.411 0.589 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.096 -5.360 7.088 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.140 4.140 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.472 4.472 8 H 0.105 0.895 9 C 0.182 3.818 10 C -0.177 4.177 11 C -0.096 4.096 12 C -0.271 4.271 13 C -0.024 4.024 14 C -0.871 4.871 15 S 2.793 3.207 16 O -0.957 6.957 17 O -0.970 6.970 18 N -0.864 5.864 19 C 0.135 3.865 20 H 0.120 0.880 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.078 4.078 24 C -0.245 4.245 25 C -0.097 4.097 26 N -0.200 5.200 27 H 0.279 0.721 28 N -0.065 5.065 29 C -0.107 4.107 30 H 0.098 0.902 31 H 0.143 0.857 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.244 0.756 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 12.407 -5.758 5.003 14.564 hybrid contribution 0.608 0.882 0.862 1.375 sum 13.015 -4.876 5.865 15.086 Atomic orbital electron populations 1.69775 1.07749 1.30024 1.32673 1.25937 0.94876 1.01799 0.91419 0.86186 0.80514 0.79619 0.79927 1.18731 1.19871 1.17912 1.19828 0.96502 0.90665 1.40156 0.89533 1.17010 0.90286 0.89711 0.84815 1.21522 0.98141 0.96730 1.01348 1.20899 0.97506 0.93530 0.97674 1.20489 1.00998 0.97016 1.08553 1.20273 0.93633 0.95128 0.93335 1.29982 1.25695 1.00846 1.30605 1.01340 0.73120 0.72785 0.73450 1.93539 1.86130 1.54815 1.61211 1.93500 1.85824 1.37472 1.80194 1.55790 1.50249 1.32141 1.48202 1.18977 0.92358 0.88541 0.86607 0.87960 1.21889 1.02096 0.98064 0.94043 1.21563 0.96030 0.99697 0.98181 1.19998 0.97473 0.99652 0.90651 1.20120 0.96551 1.08551 0.99258 1.21976 0.99704 1.00891 0.87110 1.46568 1.16647 1.43729 1.13033 0.72062 1.77429 0.96745 1.11200 1.21151 1.22945 0.97602 0.98450 0.91730 0.90211 0.85673 0.88881 0.88822 0.87434 0.75573 0.90925 0.89487 0.91391 0.91127 0.91467 0.91422 0.81173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.16 10.84 55.55 0.60 -18.56 16 2 C 0.08 1.93 5.26 -17.34 -0.09 1.84 16 3 Si 0.91 18.00 29.57 -169.99 -5.03 12.97 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.44 -11.05 7.58 -37.74 -0.29 -11.34 16 8 H 0.09 2.02 5.89 -52.49 -0.31 1.71 16 9 C 0.19 4.73 5.55 -106.82 -0.59 4.13 16 10 C -0.16 -3.87 8.66 -38.87 -0.34 -4.21 16 11 C -0.08 -1.73 10.02 -39.66 -0.40 -2.12 16 12 C -0.25 -5.50 10.05 -39.29 -0.39 -5.89 16 13 C 0.00 -0.09 9.53 -39.66 -0.38 -0.47 16 14 C -0.78 -18.73 5.84 -38.87 -0.23 -18.96 16 15 S 2.70 61.34 4.87 -107.50 -0.52 60.81 16 16 O -0.97 -25.01 16.40 -57.17 -0.94 -25.94 16 17 O -0.98 -23.42 16.57 -57.17 -0.95 -24.37 16 18 N -1.11 -20.38 4.70 -5.61 -0.03 -20.40 16 19 C 0.25 3.99 3.05 -68.77 -0.21 3.78 16 20 H 0.10 1.74 7.87 -51.93 -0.41 1.33 16 21 C -0.12 -1.57 5.43 -26.51 -0.14 -1.71 16 22 C -0.12 -1.22 5.87 -26.51 -0.16 -1.37 16 23 C -0.04 -0.38 6.28 -27.59 -0.17 -0.56 16 24 C -0.23 -2.93 5.89 -104.98 -0.62 -3.55 16 25 C 0.05 0.52 11.95 -17.36 -0.21 0.31 16 26 N -0.49 -6.16 7.37 30.35 0.22 -5.94 16 27 H 0.44 3.97 8.96 -182.43 -1.64 2.33 16 28 N -0.24 -4.28 12.52 33.75 0.42 -3.86 16 29 C 0.06 1.04 6.70 -82.35 -0.55 0.49 16 30 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 31 H 0.13 3.09 6.22 -52.49 -0.33 2.77 16 32 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.11 2.32 7.32 -52.49 -0.38 1.94 16 35 H 0.41 6.79 8.71 -34.47 -0.30 6.49 16 36 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -33.69 358.04 -11.88 -45.57 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.30 Total: 13.95 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: -4.76 Total: -39.62 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 1.22 Total: -48.76 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -1.89 Total: -50.31 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 61.34 SS G_CDS: -0.52 Total: 60.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.69 -11.88 -45.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601372622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.890 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds