Wall clock time and date at job start Wed Apr 1 2020 04:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86796 * 120.00206 * 2 1 4 4 H 1.48503 * 109.47442 * 269.99901 * 3 2 1 5 5 H 1.48504 * 109.47214 * 30.00094 * 3 2 1 6 6 H 1.48501 * 109.46980 * 149.99872 * 3 2 1 7 7 C 1.39950 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00317 * 169.37564 * 7 2 1 9 9 C 1.41395 * 119.99664 * 349.37210 * 7 2 1 10 10 C 1.40738 * 120.25095 * 331.17775 * 9 7 2 11 11 C 1.37587 * 119.74643 * 180.32072 * 10 9 7 12 12 C 1.38655 * 120.25047 * 359.66511 * 11 10 9 13 13 C 1.38618 * 120.49978 * 0.02562 * 12 11 10 14 14 C 1.37636 * 120.25009 * 0.02562 * 13 12 11 15 15 S 1.76195 * 120.12822 * 179.97438 * 14 13 12 16 16 O 1.42101 * 106.39970 * 133.70643 * 15 14 13 17 17 O 1.42099 * 106.40068 * 0.79163 * 15 14 13 18 18 N 1.65598 * 107.22209 * 247.24774 * 15 14 13 19 19 C 1.46496 * 119.99808 * 64.66683 * 18 15 14 20 20 H 1.08995 * 109.71511 * 338.98156 * 19 18 15 21 21 C 1.53375 * 109.71727 * 218.33093 * 19 18 15 22 22 C 1.53046 * 109.74516 * 189.65888 * 21 19 18 23 23 C 1.53387 * 109.71701 * 71.71699 * 22 21 19 24 24 C 1.50882 * 108.19673 * 309.44024 * 23 22 21 25 25 C 1.34574 * 128.32885 * 196.70403 * 24 23 22 26 26 N 1.35202 * 107.61747 * 179.83347 * 25 24 23 27 27 H 0.96995 * 126.00634 * 180.02562 * 26 25 24 28 28 N 1.40320 * 107.98958 * 0.03309 * 26 25 24 29 29 C 1.30125 * 108.12587 * 0.03448 * 28 26 25 30 30 H 0.97001 * 120.00018 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.12020 * 0.02562 * 10 9 7 32 32 H 1.08002 * 119.87283 * 179.68347 * 11 10 9 33 33 H 1.08002 * 119.75328 * 180.02562 * 12 11 10 34 34 H 1.07998 * 119.87012 * 180.02562 * 13 12 11 35 35 H 0.96998 * 120.00126 * 244.67195 * 18 15 14 36 36 H 1.09003 * 109.42167 * 309.74626 * 21 19 18 37 37 H 1.09000 * 109.42264 * 69.57883 * 21 19 18 38 38 H 1.09004 * 109.43853 * 311.64005 * 22 21 19 39 39 H 1.08995 * 109.38587 * 191.76286 * 22 21 19 40 40 H 1.09003 * 109.72010 * 189.76512 * 23 22 21 41 41 H 1.09001 * 109.75350 * 69.13916 * 23 22 21 42 42 H 1.07989 * 126.19095 * 359.79328 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5397 1.4400 0.7001 7 6 2.0079 -1.2120 -0.0005 8 1 3.0740 -1.2201 -0.1730 9 6 1.3190 -2.4261 0.2248 10 6 0.1527 -2.4439 1.0123 11 6 -0.5057 -3.6322 1.2302 12 6 -0.0282 -4.8080 0.6717 13 6 1.1159 -4.8013 -0.1109 14 6 1.7913 -3.6244 -0.3415 15 16 3.2456 -3.6197 -1.3361 16 8 3.1106 -2.5308 -2.2391 17 8 3.4458 -4.9610 -1.7605 18 7 4.5177 -3.2486 -0.3430 19 6 4.8943 -4.1632 0.7377 20 1 4.0521 -4.8106 0.9817 21 6 5.3058 -3.3585 1.9768 22 6 5.9246 -4.2936 3.0185 23 6 7.3097 -4.7517 2.5448 24 6 7.1778 -5.2684 1.1333 25 6 8.0396 -6.0367 0.4419 26 7 7.5040 -6.2545 -0.7802 27 1 7.9039 -6.7765 -1.4933 28 7 6.2681 -5.5924 -0.8359 29 6 6.0732 -5.0019 0.3072 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2213 -1.5291 1.4477 32 1 -1.3980 -3.6490 1.8384 33 1 -0.5516 -5.7362 0.8477 34 1 1.4786 -5.7230 -0.5413 35 1 5.0134 -2.4256 -0.4767 36 1 6.0352 -2.6006 1.6911 37 1 4.4273 -2.8731 2.4019 38 1 5.2814 -5.1633 3.1529 39 1 6.0223 -3.7649 3.9666 40 1 7.6765 -5.5463 3.1946 41 1 8.0028 -3.9106 2.5652 42 1 8.9877 -6.4111 0.7985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601372622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:15 Heat of formation + Delta-G solvation = -14.482275 kcal Electronic energy + Delta-G solvation = -29152.567937 eV Core-core repulsion = 25224.179840 eV Total energy + Delta-G solvation = -3928.388097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.30113 -39.37208 -38.19826 -37.85387 -36.58505 -35.66405 -35.03690 -32.10189 -31.89310 -31.34519 -30.91515 -28.54758 -27.33083 -24.96722 -23.42758 -22.92592 -22.66625 -21.82218 -20.33218 -19.83383 -19.47721 -18.54831 -18.26200 -17.79604 -17.23009 -16.98427 -16.14256 -16.01567 -15.94182 -15.19389 -15.06309 -14.93097 -14.82981 -14.46414 -14.38977 -14.12544 -13.75287 -13.62694 -13.24842 -13.03130 -12.93828 -12.87075 -12.81732 -12.79681 -12.73963 -12.44373 -12.15549 -12.09195 -11.72927 -11.65548 -11.63873 -11.18483 -11.12903 -11.08799 -10.48852 -10.29303 -9.82216 -9.40933 -9.23496 -8.76572 -6.59070 -0.14187 0.54698 0.98843 1.10906 1.38116 1.50299 1.54239 1.82195 2.10299 2.18087 2.42276 2.66332 3.04917 3.50135 3.58334 3.85440 3.90459 4.06042 4.14643 4.27166 4.34953 4.45730 4.52081 4.55127 4.69024 4.72554 4.83326 4.93473 4.99635 5.01119 5.17323 5.18180 5.30368 5.32852 5.37856 5.42569 5.53563 5.57446 5.72453 5.78968 5.84709 6.01876 6.10560 6.18609 6.49525 6.61832 6.70355 6.84985 6.87351 8.19188 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.004569 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.134595 B = 6126.772586 C = 6668.083618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.039 3.961 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.257 1.257 6 H -0.240 1.240 7 C -0.470 4.470 8 H 0.092 0.908 9 C 0.163 3.837 10 C -0.182 4.182 11 C -0.075 4.075 12 C -0.249 4.249 13 C -0.018 4.018 14 C -0.791 4.791 15 S 2.713 3.287 16 O -1.005 7.005 17 O -0.996 6.996 18 N -1.100 6.100 19 C 0.238 3.762 20 H 0.083 0.917 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.033 4.033 24 C -0.249 4.249 25 C 0.070 3.930 26 N -0.485 5.485 27 H 0.448 0.552 28 N -0.310 5.310 29 C 0.045 3.955 30 H 0.295 0.705 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.419 0.581 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.279 -5.693 9.076 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.179 4.179 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.181 1.181 6 H -0.163 1.163 7 C -0.498 4.498 8 H 0.109 0.891 9 C 0.159 3.841 10 C -0.202 4.202 11 C -0.094 4.094 12 C -0.269 4.269 13 C -0.038 4.038 14 C -0.886 4.886 15 S 2.810 3.190 16 O -0.995 6.995 17 O -0.986 6.986 18 N -0.857 5.857 19 C 0.128 3.872 20 H 0.101 0.899 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.071 4.071 24 C -0.261 4.261 25 C -0.076 4.076 26 N -0.196 5.196 27 H 0.294 0.706 28 N -0.132 5.132 29 C -0.126 4.126 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.254 0.746 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 14.577 -6.109 7.001 17.286 hybrid contribution -0.055 0.824 0.229 0.857 sum 14.522 -5.284 7.230 17.061 Atomic orbital electron populations 1.69811 1.08982 1.31334 1.33198 1.26800 0.95667 1.04771 0.90638 0.85312 0.80131 0.75663 0.79572 1.19648 1.18112 1.16256 1.20113 0.97007 0.91406 1.41309 0.89052 1.17311 0.91026 0.90366 0.85406 1.21591 0.98849 0.97421 1.02315 1.21250 0.98040 0.92828 0.97254 1.20875 1.00407 0.98254 1.07333 1.20539 0.94233 0.95168 0.93870 1.30167 1.26658 1.01109 1.30622 1.00591 0.73331 0.71811 0.73252 1.93474 1.86937 1.55954 1.63145 1.93468 1.86141 1.38181 1.80828 1.55360 1.48911 1.32952 1.48484 1.19208 0.92395 0.88524 0.87034 0.89879 1.21887 1.02106 0.98426 0.93200 1.21585 0.96406 0.99014 0.98205 1.20064 0.96995 1.00883 0.89180 1.20530 0.95680 1.09325 1.00570 1.22750 1.00559 0.98746 0.85515 1.46584 1.15462 1.43147 1.14359 0.70610 1.77308 0.99644 1.13480 1.22773 1.22960 0.98402 0.98704 0.92498 0.89396 0.86459 0.85784 0.85586 0.86612 0.74628 0.89951 0.90559 0.92161 0.88719 0.88949 0.89959 0.76142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.64 10.84 21.83 0.24 -40.40 16 2 C 0.04 1.90 5.26 85.26 0.45 2.35 16 3 Si 0.97 36.79 29.57 68.60 2.03 38.82 16 4 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 6 H -0.24 -8.35 7.11 99.48 0.71 -7.64 16 7 C -0.47 -24.14 7.58 23.46 0.18 -23.96 16 8 H 0.09 4.40 5.89 -2.91 -0.02 4.39 16 9 C 0.16 8.55 5.55 -21.29 -0.12 8.43 16 10 C -0.18 -9.12 8.66 22.73 0.20 -8.92 16 11 C -0.08 -3.32 10.02 22.22 0.22 -3.10 16 12 C -0.25 -10.72 10.05 22.46 0.23 -10.50 16 13 C -0.02 -0.86 9.53 22.22 0.21 -0.64 16 14 C -0.79 -39.44 5.84 22.73 0.13 -39.31 16 15 S 2.71 128.58 4.87 -56.49 -0.28 128.31 16 16 O -1.00 -54.24 16.40 -128.00 -2.10 -56.34 16 17 O -1.00 -49.52 16.57 -128.00 -2.12 -51.64 16 18 N -1.10 -41.79 4.70 -171.67 -0.81 -42.60 16 19 C 0.24 7.88 3.05 44.45 0.14 8.01 16 20 H 0.08 3.00 7.87 -2.39 -0.02 2.98 16 21 C -0.12 -2.95 5.43 30.74 0.17 -2.78 16 22 C -0.11 -2.13 5.87 30.74 0.18 -1.95 16 23 C -0.03 -0.53 6.28 30.04 0.19 -0.34 16 24 C -0.25 -5.68 5.89 -20.10 -0.12 -5.79 16 25 C 0.07 1.25 11.95 83.33 1.00 2.25 16 26 N -0.49 -11.42 7.37 -57.89 -0.43 -11.85 16 27 H 0.45 7.50 8.96 -213.18 -1.91 5.59 16 28 N -0.31 -10.89 12.52 -47.13 -0.59 -11.48 16 29 C 0.04 1.43 6.70 43.44 0.29 1.72 16 30 H 0.30 13.26 8.30 -92.71 -0.77 12.49 16 31 H 0.12 5.97 6.22 -2.91 -0.02 5.95 16 32 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 34 H 0.12 5.10 7.32 -2.91 -0.02 5.08 16 35 H 0.42 14.34 8.71 -96.75 -0.84 13.50 16 36 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.22 8.10 -2.38 -0.02 1.20 16 39 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.22 1.54 8.06 -2.92 -0.02 1.51 16 Total: -1.00 -75.95 358.04 -2.38 -78.33 By element: Atomic # 1 Polarization: 45.06 SS G_CDS: -1.66 Total: 43.40 kcal Atomic # 6 Polarization: -77.88 SS G_CDS: 3.34 Total: -74.55 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -1.59 Total: -106.33 kcal Atomic # 8 Polarization: -103.76 SS G_CDS: -4.22 Total: -107.98 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Atomic # 16 Polarization: 128.58 SS G_CDS: -0.28 Total: 128.31 kcal Total: -75.95 -2.38 -78.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601372622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.852 kcal (2) G-P(sol) polarization free energy of solvation -75.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds