Wall clock time and date at job start Wed Apr 1 2020 04:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86799 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47081 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46865 * 299.99645 * 3 2 1 6 6 H 1.48502 * 109.47038 * 59.99431 * 3 2 1 7 7 C 1.39943 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00114 * 166.82321 * 7 2 1 9 9 C 1.41398 * 120.00072 * 346.82860 * 7 2 1 10 10 C 1.40729 * 120.24477 * 330.79680 * 9 7 2 11 11 C 1.37597 * 119.74744 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24942 * 359.97438 * 11 10 9 13 13 C 1.38618 * 120.49762 * 0.02562 * 12 11 10 14 14 C 1.37640 * 120.24787 * 0.02562 * 13 12 11 15 15 S 1.76200 * 120.12572 * 179.97438 * 14 13 12 16 16 O 1.42104 * 106.40190 * 357.87581 * 15 14 13 17 17 O 1.42095 * 106.40288 * 130.79286 * 15 14 13 18 18 N 1.65603 * 107.21900 * 244.33407 * 15 14 13 19 19 C 1.46495 * 119.99805 * 63.64971 * 18 15 14 20 20 H 1.09004 * 109.51227 * 333.53936 * 19 18 15 21 21 C 1.53150 * 109.50962 * 213.40487 * 19 18 15 22 22 C 1.53257 * 109.50197 * 170.58704 * 21 19 18 23 23 N 1.46478 * 108.79490 * 50.37799 * 22 21 19 24 24 C 1.36306 * 127.77810 * 162.79897 * 23 22 21 25 25 C 1.34855 * 106.68914 * 180.10995 * 24 23 22 26 26 N 1.34290 * 108.07445 * 359.97438 * 25 24 23 27 27 C 1.30098 * 109.21049 * 359.97265 * 26 25 24 28 28 C 1.51042 * 127.39257 * 180.02562 * 27 26 25 29 29 H 0.96999 * 119.99744 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.12821 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.88027 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.75048 * 180.26954 * 12 11 10 33 33 H 1.07996 * 119.87379 * 179.97438 * 13 12 11 34 34 H 0.97001 * 119.99993 * 243.64729 * 18 15 14 35 35 H 1.09004 * 109.46527 * 290.59794 * 21 19 18 36 36 H 1.09002 * 109.46490 * 50.58150 * 21 19 18 37 37 H 1.08996 * 109.58649 * 290.58719 * 22 21 19 38 38 H 1.08998 * 109.58885 * 170.16965 * 22 21 19 39 39 H 1.07999 * 126.65849 * 0.15388 * 24 23 22 40 40 H 1.08000 * 125.96729 * 180.02562 * 25 24 23 41 41 H 1.08993 * 109.71604 * 44.37194 * 28 27 26 42 42 H 1.09003 * 109.70892 * 283.73093 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0666 -1.2245 -0.2127 9 6 1.3288 -2.4203 0.2801 10 6 0.1985 -2.4205 1.1185 11 6 -0.4543 -3.6023 1.3841 12 6 -0.0027 -4.7898 0.8288 13 6 1.1096 -4.8014 0.0016 14 6 1.7787 -3.6314 -0.2770 15 16 3.1926 -3.6499 -1.3283 16 8 3.4130 -5.0089 -1.6804 17 8 2.9928 -2.6211 -2.2878 18 7 4.4917 -3.1880 -0.4110 19 6 4.9212 -4.0149 0.7194 20 1 4.0715 -4.5822 1.0991 21 6 5.4743 -3.1163 1.8295 22 6 5.7040 -3.9492 3.0952 23 7 6.4784 -5.1412 2.7417 24 6 7.1679 -5.9675 3.5782 25 6 7.7234 -6.9239 2.8067 26 7 7.3779 -6.6833 1.5315 27 6 6.6319 -5.6186 1.4836 28 6 6.0183 -4.9827 0.2586 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1553 -1.4966 1.5518 31 1 -1.3217 -3.6050 2.0275 32 1 -0.5238 -5.7121 1.0391 33 1 1.4529 -5.7322 -0.4252 34 1 4.9682 -2.3699 -0.6222 35 1 6.4189 -2.6789 1.5059 36 1 4.7600 -2.3210 2.0427 37 1 4.7437 -4.2487 3.5148 38 1 6.2561 -3.3585 3.8262 39 1 7.2525 -5.8746 4.6509 40 1 8.3380 -7.7413 3.1538 41 1 5.5851 -5.7540 -0.3781 42 1 6.7826 -4.4357 -0.2935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601395904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:27 Heat of formation + Delta-G solvation = 1.071686 kcal Electronic energy + Delta-G solvation = -29004.709529 eV Core-core repulsion = 25076.995903 eV Total energy + Delta-G solvation = -3927.713626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.24834 -37.72444 -37.44666 -36.25003 -34.90724 -34.15853 -33.93807 -31.50141 -30.30649 -29.69959 -29.62287 -27.64004 -25.62644 -24.15344 -22.07349 -21.75837 -21.30197 -21.18331 -19.32765 -18.54516 -17.78720 -17.14254 -16.81159 -16.42638 -16.03671 -15.47755 -15.32695 -14.65527 -14.38094 -14.30638 -14.05890 -13.80434 -13.58889 -13.36941 -13.27844 -12.95320 -12.83781 -12.45437 -12.08402 -11.94167 -11.61997 -11.46368 -11.40190 -11.35258 -11.24269 -11.14174 -11.08271 -10.85130 -10.73392 -10.57307 -9.97354 -9.93038 -9.62715 -9.55218 -9.52237 -8.98779 -8.29242 -8.12465 -7.69586 -7.12669 -4.85384 1.41352 2.08593 2.24728 2.63861 2.77902 2.89896 2.94546 3.02295 3.20641 3.68216 3.69116 4.31206 4.37588 4.46092 4.52341 4.65476 4.76333 4.97729 5.07242 5.13210 5.21651 5.28851 5.43747 5.52223 5.62677 5.69576 5.78121 5.84786 5.97862 6.10957 6.16073 6.26259 6.34510 6.35545 6.69023 6.79961 6.85251 6.99119 7.18709 7.21433 7.37018 7.42240 7.56545 7.72313 7.79875 8.17587 8.18999 8.40833 8.55465 9.81499 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012079 B = 0.004254 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.445146 B = 6580.215235 C = 7051.508643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.081 3.919 3 Si 0.915 3.085 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.449 4.449 8 H 0.088 0.912 9 C 0.188 3.812 10 C -0.158 4.158 11 C -0.075 4.075 12 C -0.249 4.249 13 C -0.004 4.004 14 C -0.776 4.776 15 S 2.697 3.303 16 O -0.992 6.992 17 O -0.961 6.961 18 N -1.115 6.115 19 C 0.162 3.838 20 H 0.094 0.906 21 C -0.143 4.143 22 C 0.105 3.895 23 N -0.457 5.457 24 C -0.060 4.060 25 C -0.034 4.034 26 N -0.492 5.492 27 C 0.220 3.780 28 C -0.055 4.055 29 H 0.288 0.712 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.413 0.587 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.172 0.828 40 H 0.167 0.833 41 H 0.110 0.890 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.160 -1.552 8.350 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.141 4.141 3 Si 0.738 3.262 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.477 4.477 8 H 0.106 0.894 9 C 0.183 3.817 10 C -0.178 4.178 11 C -0.094 4.094 12 C -0.269 4.269 13 C -0.023 4.023 14 C -0.872 4.872 15 S 2.795 3.205 16 O -0.982 6.982 17 O -0.952 6.952 18 N -0.869 5.869 19 C 0.053 3.947 20 H 0.112 0.888 21 C -0.182 4.182 22 C -0.018 4.018 23 N -0.140 5.140 24 C -0.193 4.193 25 C -0.182 4.182 26 N -0.210 5.210 27 C -0.044 4.044 28 C -0.096 4.096 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.247 0.753 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.190 0.810 40 H 0.185 0.815 41 H 0.128 0.872 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.066 -2.112 6.830 11.546 hybrid contribution -0.295 1.621 1.497 2.226 sum 8.771 -0.491 8.328 12.105 Atomic orbital electron populations 1.69792 1.07813 1.30164 1.31857 1.25945 0.94856 1.01821 0.91430 0.86133 0.81058 0.80064 0.78936 1.17824 1.19294 1.19479 1.19857 0.97166 0.90929 1.39759 0.89425 1.16990 0.89866 0.89671 0.85124 1.21450 0.98656 0.96714 1.00978 1.20910 0.97404 0.93482 0.97621 1.20506 1.01754 0.96968 1.07705 1.20287 0.93550 0.95225 0.93276 1.29850 1.25954 1.00691 1.30658 1.01269 0.73098 0.72559 0.73615 1.93473 1.85874 1.36392 1.82473 1.93554 1.85200 1.58151 1.58254 1.55814 1.49484 1.35912 1.45686 1.20557 0.97092 0.90869 0.86227 0.88837 1.22253 1.03575 0.98983 0.93399 1.22011 0.96468 0.84547 0.98745 1.45501 1.38509 1.22310 1.07704 1.22517 1.03320 0.96075 0.97374 1.22340 1.05556 1.01389 0.88957 1.70069 1.14994 1.14357 1.21594 1.23283 1.00727 0.93958 0.86397 1.20864 0.97729 0.99028 0.91985 0.90102 0.86024 0.88806 0.88700 0.87335 0.75286 0.90121 0.87373 0.89086 0.88852 0.81042 0.81544 0.87162 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.17 11.01 55.55 0.61 -17.56 16 2 C 0.08 1.83 5.20 -17.34 -0.09 1.74 16 3 Si 0.91 16.80 29.58 -169.99 -5.03 11.77 16 4 H -0.25 -4.47 7.11 56.52 0.40 -4.07 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 7 C -0.45 -10.41 7.63 -37.74 -0.29 -10.69 16 8 H 0.09 1.85 5.77 -52.49 -0.30 1.55 16 9 C 0.19 4.47 5.53 -106.83 -0.59 3.88 16 10 C -0.16 -3.68 8.66 -38.87 -0.34 -4.02 16 11 C -0.08 -1.61 10.02 -39.66 -0.40 -2.00 16 12 C -0.25 -5.22 10.05 -39.29 -0.39 -5.61 16 13 C 0.00 -0.08 9.53 -39.66 -0.38 -0.45 16 14 C -0.78 -17.45 5.69 -38.87 -0.22 -17.67 16 15 S 2.70 55.32 4.88 -107.50 -0.52 54.80 16 16 O -0.99 -21.39 16.42 -57.17 -0.94 -22.33 16 17 O -0.96 -22.82 16.64 -57.17 -0.95 -23.77 16 18 N -1.11 -17.28 4.56 -4.65 -0.02 -17.30 16 19 C 0.16 2.22 2.68 -67.65 -0.18 2.04 16 20 H 0.09 1.40 7.76 -51.93 -0.40 0.99 16 21 C -0.14 -1.52 5.46 -26.52 -0.14 -1.66 16 22 C 0.11 1.01 6.98 -3.92 -0.03 0.98 16 23 N -0.46 -5.58 3.13 -113.76 -0.36 -5.94 16 24 C -0.06 -0.67 11.64 -16.76 -0.20 -0.86 16 25 C -0.03 -0.44 11.87 -17.68 -0.21 -0.65 16 26 N -0.49 -7.85 11.24 -10.62 -0.12 -7.97 16 27 C 0.22 3.22 7.65 -155.23 -1.19 2.03 16 28 C -0.06 -0.78 5.94 -27.51 -0.16 -0.94 16 29 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 30 H 0.12 2.86 6.35 -52.48 -0.33 2.53 16 31 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.11 2.21 7.33 -52.49 -0.38 1.82 16 34 H 0.41 5.51 8.59 -34.47 -0.30 5.21 16 35 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.11 1.73 7.80 -51.93 -0.41 1.33 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -31.63 358.15 -11.80 -43.43 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -5.06 Total: 13.35 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -4.81 Total: -33.90 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.11 Total: -48.76 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -1.89 Total: -46.09 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Atomic # 16 Polarization: 55.32 SS G_CDS: -0.52 Total: 54.80 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.63 -11.80 -43.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601395904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.504 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds