Wall clock time and date at job start Wed Apr 1 2020 04:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86799 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47081 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46865 * 299.99645 * 3 2 1 6 6 H 1.48502 * 109.47038 * 59.99431 * 3 2 1 7 7 C 1.39943 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00114 * 166.82321 * 7 2 1 9 9 C 1.41398 * 120.00072 * 346.82860 * 7 2 1 10 10 C 1.40729 * 120.24477 * 330.79680 * 9 7 2 11 11 C 1.37597 * 119.74744 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24942 * 359.97438 * 11 10 9 13 13 C 1.38618 * 120.49762 * 0.02562 * 12 11 10 14 14 C 1.37640 * 120.24787 * 0.02562 * 13 12 11 15 15 S 1.76200 * 120.12572 * 179.97438 * 14 13 12 16 16 O 1.42104 * 106.40190 * 357.87581 * 15 14 13 17 17 O 1.42095 * 106.40288 * 130.79286 * 15 14 13 18 18 N 1.65603 * 107.21900 * 244.33407 * 15 14 13 19 19 C 1.46495 * 119.99805 * 63.64971 * 18 15 14 20 20 H 1.09004 * 109.51227 * 333.53936 * 19 18 15 21 21 C 1.53150 * 109.50962 * 213.40487 * 19 18 15 22 22 C 1.53257 * 109.50197 * 170.58704 * 21 19 18 23 23 N 1.46478 * 108.79490 * 50.37799 * 22 21 19 24 24 C 1.36306 * 127.77810 * 162.79897 * 23 22 21 25 25 C 1.34855 * 106.68914 * 180.10995 * 24 23 22 26 26 N 1.34290 * 108.07445 * 359.97438 * 25 24 23 27 27 C 1.30098 * 109.21049 * 359.97265 * 26 25 24 28 28 C 1.51042 * 127.39257 * 180.02562 * 27 26 25 29 29 H 0.96999 * 119.99744 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.12821 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.88027 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.75048 * 180.26954 * 12 11 10 33 33 H 1.07996 * 119.87379 * 179.97438 * 13 12 11 34 34 H 0.97001 * 119.99993 * 243.64729 * 18 15 14 35 35 H 1.09004 * 109.46527 * 290.59794 * 21 19 18 36 36 H 1.09002 * 109.46490 * 50.58150 * 21 19 18 37 37 H 1.08996 * 109.58649 * 290.58719 * 22 21 19 38 38 H 1.08998 * 109.58885 * 170.16965 * 22 21 19 39 39 H 1.07999 * 126.65849 * 0.15388 * 24 23 22 40 40 H 1.08000 * 125.96729 * 180.02562 * 25 24 23 41 41 H 1.08993 * 109.71604 * 44.37194 * 28 27 26 42 42 H 1.09003 * 109.70892 * 283.73093 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0666 -1.2245 -0.2127 9 6 1.3288 -2.4203 0.2801 10 6 0.1985 -2.4205 1.1185 11 6 -0.4543 -3.6023 1.3841 12 6 -0.0027 -4.7898 0.8288 13 6 1.1096 -4.8014 0.0016 14 6 1.7787 -3.6314 -0.2770 15 16 3.1926 -3.6499 -1.3283 16 8 3.4130 -5.0089 -1.6804 17 8 2.9928 -2.6211 -2.2878 18 7 4.4917 -3.1880 -0.4110 19 6 4.9212 -4.0149 0.7194 20 1 4.0715 -4.5822 1.0991 21 6 5.4743 -3.1163 1.8295 22 6 5.7040 -3.9492 3.0952 23 7 6.4784 -5.1412 2.7417 24 6 7.1679 -5.9675 3.5782 25 6 7.7234 -6.9239 2.8067 26 7 7.3779 -6.6833 1.5315 27 6 6.6319 -5.6186 1.4836 28 6 6.0183 -4.9827 0.2586 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1553 -1.4966 1.5518 31 1 -1.3217 -3.6050 2.0275 32 1 -0.5238 -5.7121 1.0391 33 1 1.4529 -5.7322 -0.4252 34 1 4.9682 -2.3699 -0.6222 35 1 6.4189 -2.6789 1.5059 36 1 4.7600 -2.3210 2.0427 37 1 4.7437 -4.2487 3.5148 38 1 6.2561 -3.3585 3.8262 39 1 7.2525 -5.8746 4.6509 40 1 8.3380 -7.7413 3.1538 41 1 5.5851 -5.7540 -0.3781 42 1 6.7826 -4.4357 -0.2935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601395904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:26 Heat of formation + Delta-G solvation = -19.047341 kcal Electronic energy + Delta-G solvation = -29005.581955 eV Core-core repulsion = 25076.995903 eV Total energy + Delta-G solvation = -3928.586053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.20085 -39.38917 -38.59162 -37.94417 -36.66238 -35.66732 -35.13882 -32.65567 -31.99406 -31.36301 -30.59801 -28.66979 -27.33459 -25.07834 -23.45262 -23.16832 -22.87271 -22.21638 -20.56278 -19.87880 -19.48043 -18.51549 -17.99658 -17.77022 -17.37331 -17.05497 -16.51323 -16.05039 -15.89735 -15.50259 -15.13402 -15.00262 -14.93435 -14.72320 -14.55881 -14.45065 -13.97485 -13.75845 -13.49916 -13.26610 -13.00226 -12.97167 -12.92476 -12.83566 -12.79014 -12.64777 -12.48895 -12.33910 -12.09086 -11.94029 -11.62438 -11.22318 -11.16246 -10.91411 -10.50845 -10.40315 -9.83826 -9.43186 -9.23315 -8.78750 -6.59569 -0.19721 0.53320 0.97469 1.15571 1.40853 1.52370 1.55933 1.91479 2.17801 2.19782 2.26012 2.64328 2.97388 3.35626 3.51016 3.56943 3.60851 3.75811 3.89311 4.09487 4.19701 4.26835 4.33182 4.44078 4.49937 4.54645 4.63725 4.70501 4.73199 4.83032 4.94211 4.99182 5.03842 5.15135 5.21286 5.31265 5.41391 5.52367 5.71566 5.81923 5.90778 6.00881 6.08689 6.18844 6.27293 6.48246 6.69298 6.84101 7.20235 8.18538 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012079 B = 0.004254 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.445146 B = 6580.215235 C = 7051.508643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.040 3.960 3 Si 0.975 3.025 4 H -0.239 1.239 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.472 4.472 8 H 0.100 0.900 9 C 0.167 3.833 10 C -0.182 4.182 11 C -0.075 4.075 12 C -0.251 4.251 13 C -0.018 4.018 14 C -0.791 4.791 15 S 2.716 3.284 16 O -1.007 7.007 17 O -0.997 6.997 18 N -1.099 6.099 19 C 0.160 3.840 20 H 0.078 0.922 21 C -0.137 4.137 22 C 0.103 3.897 23 N -0.455 5.455 24 C -0.041 4.041 25 C -0.062 4.062 26 N -0.531 5.531 27 C 0.194 3.806 28 C -0.051 4.051 29 H 0.295 0.705 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.426 0.574 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.130 0.870 39 H 0.213 0.787 40 H 0.186 0.814 41 H 0.084 0.916 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.428 -0.717 10.507 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.178 4.178 3 Si 0.795 3.205 4 H -0.162 1.162 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.500 4.500 8 H 0.118 0.882 9 C 0.162 3.838 10 C -0.201 4.201 11 C -0.094 4.094 12 C -0.271 4.271 13 C -0.038 4.038 14 C -0.885 4.885 15 S 2.813 3.187 16 O -0.997 6.997 17 O -0.987 6.987 18 N -0.858 5.858 19 C 0.052 3.948 20 H 0.096 0.904 21 C -0.176 4.176 22 C -0.018 4.018 23 N -0.138 5.138 24 C -0.175 4.175 25 C -0.210 4.210 26 N -0.251 5.251 27 C -0.069 4.069 28 C -0.092 4.092 29 H 0.106 0.894 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.262 0.738 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.147 0.853 39 H 0.230 0.770 40 H 0.203 0.797 41 H 0.102 0.898 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.316 -1.280 8.999 13.749 hybrid contribution -0.701 1.224 0.860 1.652 sum 9.615 -0.056 9.860 13.772 Atomic orbital electron populations 1.69840 1.09234 1.31390 1.32778 1.26827 0.95543 1.04894 0.90582 0.85238 0.80585 0.75770 0.78917 1.16186 1.20038 1.18096 1.20186 0.97930 0.91364 1.40472 0.88227 1.17281 0.90453 0.90426 0.85630 1.21515 0.99541 0.97160 1.01933 1.21226 0.97808 0.92941 0.97432 1.20855 1.01369 0.98015 1.06908 1.20559 0.94036 0.95467 0.93729 1.30101 1.27128 1.00708 1.30540 1.00499 0.73272 0.71719 0.73200 1.93451 1.86131 1.37226 1.82910 1.93499 1.86044 1.59134 1.60034 1.55320 1.47901 1.36674 1.45947 1.20684 0.96565 0.91199 0.86379 0.90395 1.22231 1.04249 0.98505 0.92640 1.22239 0.97033 0.83867 0.98687 1.45682 1.38243 1.22856 1.07005 1.23156 1.01046 0.94462 0.98835 1.22828 1.06819 1.02994 0.88324 1.69987 1.16064 1.15348 1.23704 1.23183 1.01813 0.94569 0.87368 1.20735 0.97942 0.98441 0.92059 0.89442 0.86931 0.86133 0.85944 0.86505 0.73754 0.88422 0.86924 0.88710 0.85252 0.77005 0.79654 0.89755 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.46 11.01 21.83 0.24 -38.22 16 2 C 0.04 1.79 5.20 85.26 0.44 2.24 16 3 Si 0.98 33.51 29.58 68.60 2.03 35.53 16 4 H -0.24 -7.53 7.11 99.48 0.71 -6.82 16 5 H -0.28 -9.70 7.11 99.48 0.71 -8.99 16 6 H -0.26 -8.20 7.11 99.48 0.71 -7.50 16 7 C -0.47 -21.92 7.63 23.46 0.18 -21.74 16 8 H 0.10 4.18 5.77 -2.91 -0.02 4.16 16 9 C 0.17 8.01 5.53 -21.29 -0.12 7.89 16 10 C -0.18 -8.53 8.66 22.73 0.20 -8.34 16 11 C -0.08 -3.16 10.02 22.22 0.22 -2.94 16 12 C -0.25 -10.29 10.05 22.46 0.23 -10.07 16 13 C -0.02 -0.79 9.53 22.22 0.21 -0.58 16 14 C -0.79 -35.96 5.69 22.73 0.13 -35.83 16 15 S 2.72 112.95 4.88 -56.49 -0.28 112.67 16 16 O -1.01 -44.31 16.42 -128.00 -2.10 -46.41 16 17 O -1.00 -48.09 16.64 -128.00 -2.13 -50.22 16 18 N -1.10 -33.65 4.56 -168.64 -0.77 -34.42 16 19 C 0.16 4.29 2.68 45.17 0.12 4.41 16 20 H 0.08 2.34 7.76 -2.39 -0.02 2.32 16 21 C -0.14 -2.58 5.46 30.73 0.17 -2.41 16 22 C 0.10 1.65 6.98 86.47 0.60 2.25 16 23 N -0.46 -10.01 3.13 -513.82 -1.61 -11.62 16 24 C -0.04 -0.80 11.64 83.22 0.97 0.17 16 25 C -0.06 -1.52 11.87 83.54 0.99 -0.53 16 26 N -0.53 -16.83 11.24 -187.50 -2.11 -18.94 16 27 C 0.19 5.55 7.65 138.23 1.06 6.60 16 28 C -0.05 -1.43 5.94 30.09 0.18 -1.25 16 29 H 0.29 12.56 8.30 -92.71 -0.77 11.79 16 30 H 0.11 5.40 6.35 -2.91 -0.02 5.39 16 31 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.12 4.78 7.33 -2.91 -0.02 4.75 16 34 H 0.43 10.91 8.59 -96.74 -0.83 10.08 16 35 H 0.10 1.53 8.12 -2.38 -0.02 1.51 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.21 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.08 2.77 7.80 -2.39 -0.02 2.75 16 42 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -69.99 358.15 -0.91 -70.90 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: 0.24 Total: 40.84 kcal Atomic # 6 Polarization: -65.70 SS G_CDS: 5.58 Total: -60.12 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -4.25 Total: -103.20 kcal Atomic # 8 Polarization: -92.39 SS G_CDS: -4.23 Total: -96.62 kcal Atomic # 14 Polarization: 33.51 SS G_CDS: 2.03 Total: 35.53 kcal Atomic # 16 Polarization: 112.95 SS G_CDS: -0.28 Total: 112.67 kcal Total: -69.99 -0.91 -70.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601395904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.848 kcal (2) G-P(sol) polarization free energy of solvation -69.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds