Wall clock time and date at job start Wed Apr 1 2020 03:59:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30829 * 1
3 3 Si 1.86808 * 119.99761 * 2 1
4 4 H 1.48490 * 109.47023 * 269.28027 * 3 2 1
5 5 H 1.48494 * 109.46877 * 29.28327 * 3 2 1
6 6 H 1.48500 * 109.46891 * 149.28221 * 3 2 1
7 7 C 1.39939 * 120.00296 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99871 * 346.62098 * 7 2 1
9 9 C 1.41389 * 120.00468 * 166.62641 * 7 2 1
10 10 C 1.40739 * 120.24248 * 328.45798 * 9 7 2
11 11 C 1.37597 * 119.74775 * 180.02562 * 10 9 7
12 12 C 1.38662 * 120.24805 * 359.72585 * 11 10 9
13 13 C 1.38616 * 120.49725 * 0.55322 * 12 11 10
14 14 C 1.37641 * 120.24800 * 359.44635 * 13 12 11
15 15 S 1.76199 * 120.12496 * 180.25155 * 14 13 12
16 16 O 1.42101 * 106.40484 * 227.81563 * 15 14 13
17 17 O 1.42100 * 106.40327 * 0.73884 * 15 14 13
18 18 N 1.65604 * 107.21954 * 114.27625 * 15 14 13
19 19 C 1.47026 * 125.64771 * 97.09225 * 18 15 14
20 20 C 1.54325 * 107.26921 * 181.02594 * 19 18 15
21 21 C 1.55161 * 102.94284 * 22.19573 * 20 19 18
22 22 H 1.09000 * 111.00027 * 82.60709 * 21 20 19
23 23 N 1.46500 * 111.00130 * 206.42246 * 21 20 19
24 24 C 1.34951 * 126.03810 * 33.26329 * 23 21 20
25 25 C 1.35318 * 107.74113 * 179.83943 * 24 23 21
26 26 C 1.39865 * 107.92219 * 0.41864 * 25 24 23
27 27 N 1.30839 * 108.20381 * 359.74324 * 26 25 24
28 28 C 1.47421 * 125.64795 * 276.78992 * 18 15 14
29 29 H 0.96994 * 119.99704 * 359.97438 * 1 2 3
30 30 H 1.07999 * 120.12278 * 359.97438 * 10 9 7
31 31 H 1.07995 * 119.87474 * 179.97438 * 11 10 9
32 32 H 1.07989 * 119.75157 * 180.30094 * 12 11 10
33 33 H 1.08003 * 119.87278 * 179.71848 * 13 12 11
34 34 H 1.08996 * 109.87953 * 300.44321 * 19 18 15
35 35 H 1.08996 * 109.87627 * 61.61153 * 19 18 15
36 36 H 1.08998 * 110.71579 * 140.55879 * 20 19 18
37 37 H 1.08995 * 110.71653 * 263.64971 * 20 19 18
38 38 H 1.07994 * 126.12714 * 359.97438 * 24 23 21
39 39 H 1.08002 * 126.03543 * 180.16346 * 25 24 23
40 40 H 1.07999 * 125.89664 * 179.71553 * 26 25 24
41 41 H 1.08996 * 110.37069 * 274.74138 * 28 18 15
42 42 H 1.08999 * 110.36814 * 37.06975 * 28 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6178 0.0000
4 1 2.5049 2.0377 -1.3999
5 1 1.4322 2.6570 0.6848
6 1 3.5321 1.4447 0.7152
7 6 2.0081 -1.2119 -0.0005
8 1 1.4900 -2.1346 0.2155
9 6 3.3932 -1.2284 -0.2838
10 6 3.9481 -0.2807 -1.1640
11 6 5.2973 -0.3065 -1.4328
12 6 6.1104 -1.2578 -0.8357
13 6 5.5738 -2.1995 0.0284
14 6 4.2269 -2.1926 0.3118
15 16 3.5494 -3.3871 1.4157
16 8 2.3970 -3.9172 0.7753
17 8 4.6359 -4.1924 1.8517
18 7 3.0082 -2.5697 2.7504
19 6 1.6217 -2.1435 2.9904
20 6 1.5986 -1.3991 4.3420
21 6 3.0744 -0.9539 4.5188
22 1 3.2733 -0.0336 3.9696
23 7 3.4099 -0.7991 5.9365
24 6 2.9125 -1.5320 6.9547
25 6 3.4738 -1.0807 8.1002
26 6 4.3366 -0.0300 7.7719
27 7 4.2990 0.1398 6.4752
28 6 3.8356 -2.1544 3.8977
29 1 -0.4849 0.8400 0.0004
30 1 3.3171 0.4633 -1.6273
31 1 5.7252 0.4195 -2.1082
32 1 7.1691 -1.2676 -1.0486
33 1 6.2158 -2.9388 0.4843
34 1 1.2962 -1.4749 2.1934
35 1 0.9687 -3.0150 3.0359
36 1 0.9378 -0.5336 4.2943
37 1 1.2961 -2.0696 5.1463
38 1 2.1967 -2.3362 6.8700
39 1 3.2854 -1.4616 9.0931
40 1 4.9308 0.5427 8.4686
41 1 3.9198 -2.9674 4.6188
42 1 4.8238 -1.8424 3.5595
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601418376.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:59:28
Heat of formation + Delta-G solvation = 37.292868 kcal
Electronic energy + Delta-G solvation = -29255.826301 eV
Core-core repulsion = 25329.683343 eV
Total energy + Delta-G solvation = -3926.142958 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.21392 -38.21927 -37.93769 -36.48233 -35.05464 -33.98815 -32.79927 -30.82920
-30.20462 -30.09119 -29.67781 -27.97452 -25.50735 -23.02968 -22.19871 -22.02304
-21.29030 -20.98143 -19.88831 -18.45535 -17.85226 -17.60533 -16.96945 -16.57444
-15.66754 -15.51014 -14.85918 -14.73830 -14.36582 -14.09751 -13.98205 -13.74084
-13.68955 -13.30723 -13.17925 -12.95233 -12.80709 -12.66701 -12.37249 -12.00954
-11.68043 -11.53922 -11.43937 -11.39489 -11.26598 -11.17650 -11.05133 -10.84266
-10.80170 -10.62907 -10.47055 -10.06501 -9.59688 -9.40688 -9.33059 -8.69358
-8.50083 -8.32153 -7.93162 -7.28972 -4.98778 1.21593 1.90168 1.98158
2.42661 2.44426 2.85074 2.86692 2.96516 3.06040 3.66234 3.70745
4.14761 4.29295 4.47452 4.60240 4.79030 4.85457 4.96461 5.00140
5.15004 5.35678 5.37891 5.53934 5.64668 5.70499 5.75025 5.78260
5.82972 5.94842 5.98670 6.05293 6.12492 6.25313 6.33813 6.50615
6.56677 6.65249 6.77646 6.86455 6.99724 7.03963 7.17864 7.34393
7.47071 7.73190 7.73562 8.04432 8.21667 8.42668 9.67895
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.010817 B = 0.004924 C = 0.004421
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2587.993298 B = 5685.046892 C = 6331.593692
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.777 5.777
2 C 0.090 3.910
3 Si 0.904 3.096
4 H -0.265 1.265
5 H -0.286 1.286
6 H -0.242 1.242
7 C -0.462 4.462
8 H 0.132 0.868
9 C 0.168 3.832
10 C -0.238 4.238
11 C -0.042 4.042
12 C -0.255 4.255
13 C 0.016 3.984
14 C -0.771 4.771
15 S 2.720 3.280
16 O -0.958 6.958
17 O -0.988 6.988
18 N -1.003 6.003
19 C 0.115 3.885
20 C -0.135 4.135
21 C 0.146 3.854
22 H 0.122 0.878
23 N -0.357 5.357
24 C 0.057 3.943
25 C -0.279 4.279
26 C 0.040 3.960
27 N -0.294 5.294
28 C 0.122 3.878
29 H 0.292 0.708
30 H 0.109 0.891
31 H 0.100 0.900
32 H 0.102 0.898
33 H 0.114 0.886
34 H 0.108 0.892
35 H 0.071 0.929
36 H 0.091 0.909
37 H 0.080 0.920
38 H 0.172 0.828
39 H 0.145 0.855
40 H 0.180 0.820
41 H 0.071 0.929
42 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.965 1.212 11.036 11.275
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.399 5.399
2 C -0.133 4.133
3 Si 0.730 3.270
4 H -0.191 1.191
5 H -0.213 1.213
6 H -0.165 1.165
7 C -0.489 4.489
8 H 0.150 0.850
9 C 0.163 3.837
10 C -0.258 4.258
11 C -0.061 4.061
12 C -0.276 4.276
13 C -0.004 4.004
14 C -0.865 4.865
15 S 2.819 3.181
16 O -0.949 6.949
17 O -0.979 6.979
18 N -0.840 5.840
19 C -0.010 4.010
20 C -0.175 4.175
21 C 0.043 3.957
22 H 0.140 0.860
23 N -0.139 5.139
24 C -0.089 4.089
25 C -0.309 4.309
26 C -0.146 4.146
27 N -0.115 5.115
28 C -0.005 4.005
29 H 0.103 0.897
30 H 0.127 0.873
31 H 0.118 0.882
32 H 0.120 0.880
33 H 0.132 0.868
34 H 0.126 0.874
35 H 0.089 0.911
36 H 0.109 0.891
37 H 0.099 0.901
38 H 0.189 0.811
39 H 0.163 0.837
40 H 0.197 0.803
41 H 0.089 0.911
42 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 2.015 0.972 9.745 9.999
hybrid contribution 0.196 1.125 0.271 1.174
sum 2.212 2.097 10.016 10.470
Atomic orbital electron populations
1.69657 1.07911 1.31004 1.31316 1.26195 0.94835 1.01569 0.90710
0.86463 0.81096 0.79602 0.79873 1.19051 1.21266 1.16517 1.20389
0.91629 0.97630 1.39251 0.85030 1.17092 0.92110 0.87961 0.86537
1.21331 0.95317 1.04453 1.04665 1.20867 0.93771 0.95759 0.95714
1.20536 0.98353 1.01411 1.07253 1.20413 0.92683 0.94528 0.92735
1.29940 1.02971 1.26911 1.26715 1.00651 0.72618 0.73067 0.71754
1.93516 1.50053 1.77308 1.73991 1.93465 1.55774 1.66560 1.82122
1.58581 1.16064 1.75964 1.33343 1.21992 0.82129 0.99745 0.97124
1.23064 0.94303 1.01443 0.98670 1.22621 0.95745 1.00907 0.76463
0.85976 1.48669 1.33122 1.25806 1.06280 1.22519 1.00226 0.98316
0.87871 1.21465 1.06483 1.03997 0.98947 1.23866 0.99577 0.98203
0.92988 1.77420 1.11685 1.11991 1.10425 1.22139 0.94669 0.95082
0.88631 0.89662 0.87293 0.88175 0.87975 0.86816 0.87426 0.91052
0.89052 0.90105 0.81053 0.83736 0.80268 0.91073 0.89903
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -17.84 13.93 55.55 0.77 -17.07 16
2 C 0.09 2.06 5.04 -17.34 -0.09 1.97 16
3 Si 0.90 18.48 24.46 -169.99 -4.16 14.32 16
4 H -0.26 -5.33 6.48 56.52 0.37 -4.96 16
5 H -0.29 -5.60 7.11 56.52 0.40 -5.20 16
6 H -0.24 -5.10 6.92 56.52 0.39 -4.71 16
7 C -0.46 -11.10 6.61 -37.75 -0.25 -11.35 16
8 H 0.13 3.38 5.15 -52.48 -0.27 3.11 16
9 C 0.17 3.97 5.11 -106.83 -0.55 3.43 16
10 C -0.24 -5.37 7.15 -38.87 -0.28 -5.64 16
11 C -0.04 -0.86 10.02 -39.66 -0.40 -1.26 16
12 C -0.26 -5.10 10.05 -39.29 -0.39 -5.50 16
13 C 0.02 0.34 9.53 -39.66 -0.38 -0.03 16
14 C -0.77 -17.33 5.97 -38.87 -0.23 -17.56 16
15 S 2.72 57.50 5.30 -107.50 -0.57 56.93 16
16 O -0.96 -22.69 15.13 -57.17 -0.87 -23.56 16
17 O -0.99 -21.65 16.65 -57.17 -0.95 -22.60 16
18 N -1.00 -17.71 3.65 -111.29 -0.41 -18.11 16
19 C 0.12 1.86 6.50 -3.06 -0.02 1.84 16
20 C -0.13 -1.70 6.37 -24.89 -0.16 -1.86 16
21 C 0.15 2.05 4.17 -65.66 -0.27 1.78 16
22 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16
23 N -0.36 -4.85 3.64 -52.66 -0.19 -5.04 16
24 C 0.06 0.64 10.57 -17.22 -0.18 0.46 16
25 C -0.28 -2.96 10.80 -40.01 -0.43 -3.39 16
26 C 0.04 0.46 12.03 -17.37 -0.21 0.26 16
27 N -0.29 -4.33 12.58 30.62 0.39 -3.95 16
28 C 0.12 1.87 6.75 -2.41 -0.02 1.85 16
29 H 0.29 6.05 8.30 -40.82 -0.34 5.71 16
30 H 0.11 2.39 4.44 -52.49 -0.23 2.16 16
31 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16
32 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16
33 H 0.11 2.20 7.32 -52.48 -0.38 1.81 16
34 H 0.11 2.01 5.16 -51.93 -0.27 1.74 16
35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16
36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16
37 H 0.08 0.82 6.38 -51.93 -0.33 0.49 16
38 H 0.17 1.43 6.97 -52.49 -0.37 1.07 16
39 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16
40 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16
41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16
LS Contribution 349.18 15.07 5.26 5.26
Total: -1.00 -29.57 349.18 -9.42 -38.99
By element:
Atomic # 1 Polarization: 14.66 SS G_CDS: -4.84 Total: 9.83 kcal
Atomic # 6 Polarization: -31.15 SS G_CDS: -3.86 Total: -35.01 kcal
Atomic # 7 Polarization: -44.73 SS G_CDS: 0.56 Total: -44.17 kcal
Atomic # 8 Polarization: -44.34 SS G_CDS: -1.82 Total: -46.16 kcal
Atomic # 14 Polarization: 18.48 SS G_CDS: -4.16 Total: 14.32 kcal
Atomic # 16 Polarization: 57.50 SS G_CDS: -0.57 Total: 56.93 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -29.57 -9.42 -38.99 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601418376.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.280 kcal
(2) G-P(sol) polarization free energy of solvation -29.572 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.708 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.293 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds