Wall clock time and date at job start Wed Apr 1 2020 03:59:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30829 * 1
3 3 Si 1.86808 * 119.99761 * 2 1
4 4 H 1.48490 * 109.47023 * 269.28027 * 3 2 1
5 5 H 1.48494 * 109.46877 * 29.28327 * 3 2 1
6 6 H 1.48500 * 109.46891 * 149.28221 * 3 2 1
7 7 C 1.39939 * 120.00296 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99871 * 346.62098 * 7 2 1
9 9 C 1.41389 * 120.00468 * 166.62641 * 7 2 1
10 10 C 1.40739 * 120.24248 * 328.45798 * 9 7 2
11 11 C 1.37597 * 119.74775 * 180.02562 * 10 9 7
12 12 C 1.38662 * 120.24805 * 359.72585 * 11 10 9
13 13 C 1.38616 * 120.49725 * 0.55322 * 12 11 10
14 14 C 1.37641 * 120.24800 * 359.44635 * 13 12 11
15 15 S 1.76199 * 120.12496 * 180.25155 * 14 13 12
16 16 O 1.42101 * 106.40484 * 227.81563 * 15 14 13
17 17 O 1.42100 * 106.40327 * 0.73884 * 15 14 13
18 18 N 1.65604 * 107.21954 * 114.27625 * 15 14 13
19 19 C 1.47026 * 125.64771 * 97.09225 * 18 15 14
20 20 C 1.54325 * 107.26921 * 181.02594 * 19 18 15
21 21 C 1.55161 * 102.94284 * 22.19573 * 20 19 18
22 22 H 1.09000 * 111.00027 * 82.60709 * 21 20 19
23 23 N 1.46500 * 111.00130 * 206.42246 * 21 20 19
24 24 C 1.34951 * 126.03810 * 33.26329 * 23 21 20
25 25 C 1.35318 * 107.74113 * 179.83943 * 24 23 21
26 26 C 1.39865 * 107.92219 * 0.41864 * 25 24 23
27 27 N 1.30839 * 108.20381 * 359.74324 * 26 25 24
28 28 C 1.47421 * 125.64795 * 276.78992 * 18 15 14
29 29 H 0.96994 * 119.99704 * 359.97438 * 1 2 3
30 30 H 1.07999 * 120.12278 * 359.97438 * 10 9 7
31 31 H 1.07995 * 119.87474 * 179.97438 * 11 10 9
32 32 H 1.07989 * 119.75157 * 180.30094 * 12 11 10
33 33 H 1.08003 * 119.87278 * 179.71848 * 13 12 11
34 34 H 1.08996 * 109.87953 * 300.44321 * 19 18 15
35 35 H 1.08996 * 109.87627 * 61.61153 * 19 18 15
36 36 H 1.08998 * 110.71579 * 140.55879 * 20 19 18
37 37 H 1.08995 * 110.71653 * 263.64971 * 20 19 18
38 38 H 1.07994 * 126.12714 * 359.97438 * 24 23 21
39 39 H 1.08002 * 126.03543 * 180.16346 * 25 24 23
40 40 H 1.07999 * 125.89664 * 179.71553 * 26 25 24
41 41 H 1.08996 * 110.37069 * 274.74138 * 28 18 15
42 42 H 1.08999 * 110.36814 * 37.06975 * 28 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6178 0.0000
4 1 2.5049 2.0377 -1.3999
5 1 1.4322 2.6570 0.6848
6 1 3.5321 1.4447 0.7152
7 6 2.0081 -1.2119 -0.0005
8 1 1.4900 -2.1346 0.2155
9 6 3.3932 -1.2284 -0.2838
10 6 3.9481 -0.2807 -1.1640
11 6 5.2973 -0.3065 -1.4328
12 6 6.1104 -1.2578 -0.8357
13 6 5.5738 -2.1995 0.0284
14 6 4.2269 -2.1926 0.3118
15 16 3.5494 -3.3871 1.4157
16 8 2.3970 -3.9172 0.7753
17 8 4.6359 -4.1924 1.8517
18 7 3.0082 -2.5697 2.7504
19 6 1.6217 -2.1435 2.9904
20 6 1.5986 -1.3991 4.3420
21 6 3.0744 -0.9539 4.5188
22 1 3.2733 -0.0336 3.9696
23 7 3.4099 -0.7991 5.9365
24 6 2.9125 -1.5320 6.9547
25 6 3.4738 -1.0807 8.1002
26 6 4.3366 -0.0300 7.7719
27 7 4.2990 0.1398 6.4752
28 6 3.8356 -2.1544 3.8977
29 1 -0.4849 0.8400 0.0004
30 1 3.3171 0.4633 -1.6273
31 1 5.7252 0.4195 -2.1082
32 1 7.1691 -1.2676 -1.0486
33 1 6.2158 -2.9388 0.4843
34 1 1.2962 -1.4749 2.1934
35 1 0.9687 -3.0150 3.0359
36 1 0.9378 -0.5336 4.2943
37 1 1.2961 -2.0696 5.1463
38 1 2.1967 -2.3362 6.8700
39 1 3.2854 -1.4616 9.0931
40 1 4.9308 0.5427 8.4686
41 1 3.9198 -2.9674 4.6188
42 1 4.8238 -1.8424 3.5595
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601418376.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:59:28
Heat of formation + Delta-G solvation = 17.738217 kcal
Electronic energy + Delta-G solvation = -29256.674254 eV
Core-core repulsion = 25329.683343 eV
Total energy + Delta-G solvation = -3926.990911 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.13237 -39.67692 -39.35871 -38.22408 -36.81836 -35.69655 -33.91803 -32.52387
-31.86731 -30.99445 -30.83811 -29.10522 -27.22000 -24.22760 -23.70886 -23.25977
-22.98306 -21.89689 -20.87670 -19.97425 -19.56764 -19.03634 -18.19693 -18.12696
-17.17461 -17.02921 -16.30248 -15.96751 -15.73945 -15.60304 -15.36468 -15.10376
-14.86016 -14.66805 -14.55958 -14.37399 -14.08544 -13.86745 -13.65831 -13.50473
-13.23168 -13.13656 -13.03934 -12.94335 -12.75891 -12.61993 -12.56076 -12.43567
-12.16230 -11.91220 -11.70973 -11.55615 -11.29480 -11.00580 -10.38051 -10.08098
-9.91740 -9.63664 -9.47123 -9.00868 -6.75548 -0.40471 0.29374 0.73339
1.01068 1.21360 1.32818 1.41393 1.45103 2.01841 2.02686 2.18101
2.46165 2.86009 3.15559 3.26203 3.39342 3.62222 3.84628 3.98528
4.08084 4.14581 4.18554 4.25788 4.27128 4.40439 4.55605 4.64524
4.67188 4.74623 4.77954 4.82980 4.88308 4.96060 5.02025 5.18072
5.21470 5.23007 5.32965 5.40053 5.54538 5.67022 5.79029 5.81734
6.04586 6.15248 6.25516 6.49510 6.66570 6.83812 8.01525
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.010817 B = 0.004924 C = 0.004421
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2587.993298 B = 5685.046892 C = 6331.593692
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.804 5.804
2 C 0.071 3.929
3 Si 0.944 3.056
4 H -0.257 1.257
5 H -0.272 1.272
6 H -0.254 1.254
7 C -0.481 4.481
8 H 0.106 0.894
9 C 0.151 3.849
10 C -0.263 4.263
11 C -0.041 4.041
12 C -0.249 4.249
13 C 0.001 3.999
14 C -0.788 4.788
15 S 2.734 3.266
16 O -0.991 6.991
17 O -0.999 6.999
18 N -1.001 6.001
19 C 0.110 3.890
20 C -0.119 4.119
21 C 0.155 3.845
22 H 0.104 0.896
23 N -0.370 5.370
24 C 0.052 3.948
25 C -0.278 4.278
26 C 0.040 3.960
27 N -0.344 5.344
28 C 0.119 3.881
29 H 0.302 0.698
30 H 0.111 0.889
31 H 0.137 0.863
32 H 0.138 0.862
33 H 0.128 0.872
34 H 0.079 0.921
35 H 0.077 0.923
36 H 0.099 0.901
37 H 0.113 0.887
38 H 0.201 0.799
39 H 0.173 0.827
40 H 0.207 0.793
41 H 0.088 0.912
42 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.042 1.945 12.650 13.156
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.427 5.427
2 C -0.150 4.150
3 Si 0.768 3.232
4 H -0.183 1.183
5 H -0.198 1.198
6 H -0.178 1.178
7 C -0.509 4.509
8 H 0.123 0.877
9 C 0.146 3.854
10 C -0.282 4.282
11 C -0.059 4.059
12 C -0.269 4.269
13 C -0.019 4.019
14 C -0.881 4.881
15 S 2.833 3.167
16 O -0.981 6.981
17 O -0.990 6.990
18 N -0.839 5.839
19 C -0.015 4.015
20 C -0.159 4.159
21 C 0.050 3.950
22 H 0.122 0.878
23 N -0.152 5.152
24 C -0.093 4.093
25 C -0.307 4.307
26 C -0.146 4.146
27 N -0.165 5.165
28 C -0.008 4.008
29 H 0.113 0.887
30 H 0.128 0.872
31 H 0.155 0.845
32 H 0.156 0.844
33 H 0.146 0.854
34 H 0.098 0.902
35 H 0.095 0.905
36 H 0.118 0.882
37 H 0.131 0.869
38 H 0.218 0.782
39 H 0.191 0.809
40 H 0.224 0.776
41 H 0.106 0.894
42 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 3.092 1.704 11.357 11.893
hybrid contribution -0.020 0.836 -0.160 0.852
sum 3.071 2.540 11.197 11.885
Atomic orbital electron populations
1.69655 1.08613 1.32132 1.32304 1.26576 0.95214 1.03045 0.90181
0.85849 0.79812 0.77513 0.80057 1.18303 1.19786 1.17829 1.20237
0.92134 0.97292 1.41217 0.87653 1.17289 0.92167 0.88859 0.87049
1.21499 0.96668 1.04830 1.05237 1.21309 0.92940 0.96171 0.95507
1.21011 1.00163 1.00125 1.05576 1.20751 0.92388 0.95473 0.93302
1.30212 1.03807 1.26747 1.27382 1.00016 0.71837 0.72968 0.71913
1.93470 1.51161 1.78312 1.75184 1.93436 1.56068 1.67171 1.82337
1.58242 1.17119 1.75687 1.32892 1.22047 0.81247 0.99834 0.98356
1.23017 0.93659 1.01886 0.97331 1.22325 0.96152 0.99350 0.77163
0.87799 1.48587 1.33925 1.26628 1.06090 1.23122 1.00331 0.98461
0.87399 1.21865 1.05557 1.03256 1.00054 1.24461 0.99322 0.98316
0.92471 1.77386 1.13379 1.13657 1.12087 1.22311 0.94113 0.96347
0.88031 0.88686 0.87171 0.84508 0.84423 0.85391 0.90240 0.90475
0.88244 0.86860 0.78241 0.80945 0.77620 0.89395 0.90802
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -37.84 13.93 21.83 0.30 -37.54 16
2 C 0.07 3.31 5.04 85.25 0.43 3.74 16
3 Si 0.94 37.97 24.46 68.60 1.68 39.64 16
4 H -0.26 -9.97 6.48 99.48 0.64 -9.33 16
5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16
6 H -0.25 -10.65 6.92 99.48 0.69 -9.97 16
7 C -0.48 -24.03 6.61 23.46 0.16 -23.88 16
8 H 0.11 5.74 5.15 -2.91 -0.01 5.73 16
9 C 0.15 7.28 5.11 -21.29 -0.11 7.17 16
10 C -0.26 -11.72 7.15 22.73 0.16 -11.56 16
11 C -0.04 -1.58 10.02 22.22 0.22 -1.35 16
12 C -0.25 -9.34 10.05 22.46 0.23 -9.12 16
13 C 0.00 0.02 9.53 22.22 0.21 0.24 16
14 C -0.79 -35.92 5.97 22.73 0.14 -35.79 16
15 S 2.73 118.52 5.30 -56.49 -0.30 118.22 16
16 O -0.99 -48.99 15.13 -128.00 -1.94 -50.93 16
17 O -1.00 -44.08 16.65 -128.00 -2.13 -46.21 16
18 N -1.00 -35.91 3.65 -506.02 -1.85 -37.75 16
19 C 0.11 3.61 6.50 86.73 0.56 4.17 16
20 C -0.12 -2.86 6.37 31.78 0.20 -2.66 16
21 C 0.15 4.25 4.17 46.46 0.19 4.44 16
22 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16
23 N -0.37 -9.51 3.64 -320.53 -1.17 -10.68 16
24 C 0.05 1.02 10.57 83.54 0.88 1.90 16
25 C -0.28 -5.02 10.80 21.99 0.24 -4.78 16
26 C 0.04 0.85 12.03 85.23 1.02 1.87 16
27 N -0.34 -9.76 12.58 -57.03 -0.72 -10.48 16
28 C 0.12 3.60 6.75 86.93 0.59 4.19 16
29 H 0.30 12.66 8.30 -92.71 -0.77 11.89 16
30 H 0.11 4.79 4.44 -2.91 -0.01 4.78 16
31 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16
32 H 0.14 4.15 8.06 -2.92 -0.02 4.13 16
33 H 0.13 4.82 7.32 -2.91 -0.02 4.80 16
34 H 0.08 3.11 5.16 -2.39 -0.01 3.10 16
35 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16
36 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16
37 H 0.11 1.97 6.38 -2.39 -0.02 1.95 16
38 H 0.20 2.54 6.97 -2.91 -0.02 2.52 16
39 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16
40 H 0.21 2.91 8.06 -2.91 -0.02 2.88 16
41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16
42 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16
Total: -1.00 -65.45 349.18 -0.01 -65.46
By element:
Atomic # 1 Polarization: 30.69 SS G_CDS: 0.98 Total: 31.67 kcal
Atomic # 6 Polarization: -66.53 SS G_CDS: 5.13 Total: -61.41 kcal
Atomic # 7 Polarization: -93.02 SS G_CDS: -3.43 Total: -96.45 kcal
Atomic # 8 Polarization: -93.07 SS G_CDS: -4.07 Total: -97.13 kcal
Atomic # 14 Polarization: 37.97 SS G_CDS: 1.68 Total: 39.64 kcal
Atomic # 16 Polarization: 118.52 SS G_CDS: -0.30 Total: 118.22 kcal
Total: -65.45 -0.01 -65.46 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601418376.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.197 kcal
(2) G-P(sol) polarization free energy of solvation -65.453 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.744 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.459 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.738 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds