Wall clock time and date at job start Wed Apr 1 2020 05:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32162 * 119.99746 * 2 1 4 4 C 1.32127 * 119.99780 * 180.27734 * 3 2 1 5 5 C 1.38388 * 119.99507 * 359.72798 * 4 3 2 6 6 N 1.32124 * 120.00554 * 0.02562 * 5 4 3 7 7 C 1.32160 * 119.99601 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00032 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47214 * 89.99535 * 8 7 6 10 10 N 1.46497 * 109.47126 * 180.02562 * 9 8 7 11 11 S 1.65605 * 120.00144 * 163.24148 * 10 9 8 12 12 O 1.42097 * 106.39956 * 312.92750 * 11 10 9 13 13 O 1.42096 * 106.40162 * 180.02562 * 11 10 9 14 14 C 1.76199 * 107.22080 * 66.46884 * 11 10 9 15 15 C 1.37638 * 120.12914 * 111.69511 * 14 11 10 16 16 C 1.38617 * 120.24533 * 180.31963 * 15 14 11 17 17 C 1.38651 * 120.50066 * 359.67533 * 16 15 14 18 18 C 1.37595 * 120.25245 * 359.97438 * 17 16 15 19 19 C 1.40702 * 120.12557 * 291.39186 * 14 11 10 20 20 C 1.41400 * 120.24462 * 359.97438 * 19 14 11 21 21 H 1.08008 * 119.99800 * 332.60594 * 20 19 14 22 22 C 1.39940 * 119.99996 * 152.60805 * 20 19 14 23 23 N 1.30821 * 120.00161 * 338.05877 * 22 20 19 24 24 Si 1.86799 * 119.99678 * 158.05506 * 22 20 19 25 25 H 1.48504 * 109.46910 * 180.02562 * 24 22 20 26 26 H 1.48499 * 109.47242 * 299.99915 * 24 22 20 27 27 H 1.48505 * 109.47102 * 60.00572 * 24 22 20 28 28 H 1.09007 * 109.46992 * 270.24349 * 1 2 3 29 29 H 1.08993 * 109.47271 * 30.24320 * 1 2 3 30 30 H 1.09000 * 109.47023 * 150.25311 * 1 2 3 31 31 H 1.07997 * 119.99646 * 179.71103 * 4 3 2 32 32 H 1.08001 * 119.99572 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.46791 * 329.99779 * 8 7 6 34 34 H 1.09001 * 109.47037 * 210.00199 * 8 7 6 35 35 H 1.09003 * 109.47042 * 60.00398 * 9 8 7 36 36 H 1.09001 * 109.47661 * 300.00282 * 9 8 7 37 37 H 0.97002 * 120.00221 * 343.23716 * 10 9 8 38 38 H 1.07991 * 119.87704 * 0.02562 * 15 14 11 39 39 H 1.07999 * 119.74311 * 179.69435 * 16 15 14 40 40 H 1.08001 * 119.87747 * 180.02562 * 17 16 15 41 41 H 1.08001 * 120.13022 * 180.02562 * 18 17 16 42 42 H 0.97000 * 120.00202 * 355.03442 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1446 0.0000 4 6 3.4890 1.1446 -0.0055 5 6 4.1809 -0.0539 -0.0056 6 7 3.5203 -1.1982 -0.0007 7 6 2.1987 -1.1981 0.0048 8 6 1.4451 -2.5032 0.0098 9 6 1.1963 -2.9428 1.4539 10 7 0.4643 -4.2118 1.4588 11 16 0.4144 -5.1337 2.8336 12 8 1.7485 -5.2048 3.3176 13 8 -0.3600 -6.2826 2.5184 14 6 -0.5033 -4.2290 4.0353 15 6 -1.7393 -4.6777 4.4422 16 6 -2.4662 -3.9644 5.3826 17 6 -1.9558 -2.7966 5.9286 18 6 -0.7194 -2.3331 5.5419 19 6 0.0272 -3.0486 4.5873 20 6 1.2989 -2.5817 4.1819 21 1 2.0419 -3.2797 3.8251 22 6 1.5948 -1.2153 4.2432 23 7 0.6263 -0.3360 4.2511 24 14 3.3729 -0.6471 4.3138 25 1 3.4165 0.8361 4.3734 26 1 4.0248 -1.2100 5.5235 27 1 4.0908 -1.1156 3.1011 28 1 -0.3633 0.0044 1.0277 29 1 -0.3633 0.8877 -0.5176 30 1 -0.3633 -0.8922 -0.5099 31 1 4.0289 2.0799 -0.0103 32 1 5.2609 -0.0539 -0.0106 33 1 2.0321 -3.2635 -0.5054 34 1 0.4906 -2.3735 -0.5002 35 1 0.6093 -2.1824 1.9692 36 1 2.1508 -3.0725 1.9640 37 1 0.0087 -4.5120 0.6568 38 1 -2.1462 -5.5864 4.0239 39 1 -3.4373 -4.3213 5.6924 40 1 -2.5306 -2.2490 6.6608 41 1 -0.3235 -1.4234 5.9688 42 1 -0.2929 -0.6259 4.1420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:52 Heat of formation + Delta-G solvation = -19.556741 kcal Electronic energy + Delta-G solvation = -29423.898251 eV Core-core repulsion = 25495.290109 eV Total energy + Delta-G solvation = -3928.608142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.06523 -37.98192 -36.52550 -35.88412 -34.95396 -34.37504 -34.17594 -33.11558 -30.28544 -29.50205 -29.15290 -27.77264 -25.58105 -24.14142 -22.79420 -22.03428 -21.49882 -21.25267 -18.80524 -18.27143 -17.74519 -17.07792 -16.26312 -16.25610 -15.74724 -15.16980 -14.98479 -14.88436 -14.49173 -14.28204 -14.09402 -13.77044 -13.41719 -13.18944 -12.81198 -12.67275 -12.56159 -12.43621 -12.13109 -11.99756 -11.56069 -11.41325 -11.31830 -11.29250 -11.22403 -11.19625 -11.04349 -10.98159 -10.70659 -10.57305 -10.48327 -9.86459 -9.42621 -9.36071 -8.92563 -8.91884 -8.70724 -8.28564 -7.87457 -7.51952 -4.92351 0.87666 1.27154 1.46567 2.17251 2.58659 3.00397 3.09167 3.20800 3.73831 3.76828 3.89803 4.16332 4.24741 4.28850 4.57452 4.61728 4.80544 5.10297 5.14336 5.24221 5.27811 5.36442 5.46104 5.55659 5.66832 5.80830 5.87849 5.89213 6.00742 6.08898 6.15718 6.24669 6.38783 6.51999 6.57839 6.65334 6.83704 7.09275 7.23371 7.32257 7.43179 7.50101 7.57835 7.63165 7.74356 7.91897 7.92968 8.32292 8.50465 9.69210 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.005258 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.784113 B = 5323.523970 C = 6103.559982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.095 3.905 3 N -0.436 5.436 4 C 0.045 3.955 5 C 0.040 3.960 6 N -0.428 5.428 7 C 0.091 3.909 8 C -0.083 4.083 9 C 0.134 3.866 10 N -1.121 6.121 11 S 2.707 3.293 12 O -0.972 6.972 13 O -0.997 6.997 14 C -0.781 4.781 15 C 0.014 3.986 16 C -0.262 4.262 17 C -0.055 4.055 18 C -0.212 4.212 19 C 0.167 3.833 20 C -0.525 4.525 21 H 0.119 0.881 22 C 0.048 3.952 23 N -0.774 5.774 24 Si 1.039 2.961 25 H -0.271 1.271 26 H -0.266 1.266 27 H -0.263 1.263 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.406 0.594 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 3.745 -8.904 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.046 4.046 3 N -0.152 5.152 4 C -0.115 4.115 5 C -0.119 4.119 6 N -0.143 5.143 7 C -0.051 4.051 8 C -0.123 4.123 9 C 0.008 3.992 10 N -0.877 5.877 11 S 2.804 3.196 12 O -0.962 6.962 13 O -0.988 6.988 14 C -0.877 4.877 15 C -0.006 4.006 16 C -0.282 4.282 17 C -0.074 4.074 18 C -0.232 4.232 19 C 0.162 3.838 20 C -0.551 4.551 21 H 0.137 0.863 22 C -0.178 4.178 23 N -0.396 5.396 24 Si 0.861 3.139 25 H -0.195 1.195 26 H -0.191 1.191 27 H -0.188 1.188 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.184 0.816 32 H 0.184 0.816 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.238 0.762 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.130 0.870 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.389 4.372 -8.546 10.180 hybrid contribution -1.555 -0.652 0.121 1.690 sum 1.834 3.721 -8.425 9.390 Atomic orbital electron populations 1.20825 0.87881 1.03380 1.04435 1.22058 0.98406 0.88899 0.95233 1.68277 1.08845 1.29135 1.08915 1.23698 0.90947 0.99723 0.97137 1.23690 1.01766 0.88867 0.97614 1.68252 1.08171 1.29823 1.08015 1.21835 0.90566 0.96105 0.96572 1.20891 0.99591 0.92639 0.99182 1.21578 0.98036 0.85202 0.94412 1.55545 1.67633 1.35540 1.29016 1.00838 0.73769 0.72111 0.72844 1.93477 1.36659 1.86125 1.79917 1.93455 1.72642 1.48033 1.84694 1.29757 1.11761 1.19066 1.27067 1.20308 0.91450 0.95823 0.93000 1.20471 1.01155 0.99836 1.06754 1.20845 0.95108 0.94866 0.96588 1.21382 0.96631 1.03199 1.01993 1.17024 0.91048 0.88341 0.87394 1.21623 0.99151 0.96843 1.37527 0.86313 1.26957 1.06784 0.92903 0.91107 1.70507 1.03961 1.38775 1.26326 0.83979 0.73001 0.77298 0.79610 1.19498 1.19068 1.18754 0.88973 0.90457 0.90083 0.81629 0.81612 0.89282 0.89260 0.89951 0.89259 0.76156 0.87235 0.88480 0.88623 0.87008 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.79 36.01 0.35 -1.03 16 2 C 0.09 1.43 6.79 -82.41 -0.56 0.87 16 3 N -0.44 -6.67 10.42 -9.29 -0.10 -6.77 16 4 C 0.04 0.58 11.23 -17.37 -0.19 0.38 16 5 C 0.04 0.53 11.23 -17.37 -0.19 0.33 16 6 N -0.43 -6.76 10.42 -9.29 -0.10 -6.85 16 7 C 0.09 1.41 6.04 -82.41 -0.50 0.91 16 8 C -0.08 -1.17 5.27 -27.89 -0.15 -1.32 16 9 C 0.13 2.35 4.42 -4.05 -0.02 2.34 16 10 N -1.12 -19.07 5.99 -10.62 -0.06 -19.13 16 11 S 2.71 57.19 5.44 -107.50 -0.58 56.61 16 12 O -0.97 -23.23 14.90 -57.18 -0.85 -24.08 16 13 O -1.00 -21.96 16.97 -57.18 -0.97 -22.93 16 14 C -0.78 -17.90 5.97 -38.87 -0.23 -18.13 16 15 C 0.01 0.31 9.54 -39.66 -0.38 -0.07 16 16 C -0.26 -5.48 10.05 -39.29 -0.39 -5.88 16 17 C -0.06 -1.18 10.02 -39.66 -0.40 -1.57 16 18 C -0.21 -4.96 7.85 -38.87 -0.31 -5.26 16 19 C 0.17 4.01 5.28 -106.82 -0.56 3.45 16 20 C -0.52 -12.46 4.81 -37.74 -0.18 -12.64 16 21 H 0.12 2.92 4.00 -52.48 -0.21 2.71 16 22 C 0.05 1.09 4.60 -17.35 -0.08 1.01 16 23 N -0.77 -17.86 12.37 55.55 0.69 -17.17 16 24 Si 1.04 20.83 29.99 -169.99 -5.10 15.73 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 27 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.85 5.95 -51.93 -0.31 0.54 16 31 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.09 1.00 5.94 -51.93 -0.31 0.69 16 35 H 0.08 1.57 6.45 -51.93 -0.33 1.24 16 36 H 0.09 1.78 6.04 -51.93 -0.31 1.47 16 37 H 0.41 5.48 8.67 -34.47 -0.30 5.18 16 38 H 0.11 2.21 7.33 -52.49 -0.38 1.82 16 39 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.11 2.64 6.47 -52.49 -0.34 2.30 16 42 H 0.30 7.06 6.40 -40.82 -0.26 6.80 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -30.55 354.58 -10.04 -40.59 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -4.51 Total: 15.28 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: -3.79 Total: -36.61 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.43 Total: -49.93 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -1.82 Total: -47.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.10 Total: 15.73 kcal Atomic # 16 Polarization: 57.19 SS G_CDS: -0.58 Total: 56.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.55 -10.04 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.031 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds