Wall clock time and date at job start Wed Apr 1 2020 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32162 * 119.99746 * 2 1 4 4 C 1.32127 * 119.99780 * 180.27734 * 3 2 1 5 5 C 1.38388 * 119.99507 * 359.72798 * 4 3 2 6 6 N 1.32124 * 120.00554 * 0.02562 * 5 4 3 7 7 C 1.32160 * 119.99601 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00032 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47214 * 89.99535 * 8 7 6 10 10 N 1.46497 * 109.47126 * 180.02562 * 9 8 7 11 11 S 1.65605 * 120.00144 * 163.24148 * 10 9 8 12 12 O 1.42097 * 106.39956 * 312.92750 * 11 10 9 13 13 O 1.42096 * 106.40162 * 180.02562 * 11 10 9 14 14 C 1.76199 * 107.22080 * 66.46884 * 11 10 9 15 15 C 1.37638 * 120.12914 * 111.69511 * 14 11 10 16 16 C 1.38617 * 120.24533 * 180.31963 * 15 14 11 17 17 C 1.38651 * 120.50066 * 359.67533 * 16 15 14 18 18 C 1.37595 * 120.25245 * 359.97438 * 17 16 15 19 19 C 1.40702 * 120.12557 * 291.39186 * 14 11 10 20 20 C 1.41400 * 120.24462 * 359.97438 * 19 14 11 21 21 H 1.08008 * 119.99800 * 332.60594 * 20 19 14 22 22 C 1.39940 * 119.99996 * 152.60805 * 20 19 14 23 23 N 1.30821 * 120.00161 * 338.05877 * 22 20 19 24 24 Si 1.86799 * 119.99678 * 158.05506 * 22 20 19 25 25 H 1.48504 * 109.46910 * 180.02562 * 24 22 20 26 26 H 1.48499 * 109.47242 * 299.99915 * 24 22 20 27 27 H 1.48505 * 109.47102 * 60.00572 * 24 22 20 28 28 H 1.09007 * 109.46992 * 270.24349 * 1 2 3 29 29 H 1.08993 * 109.47271 * 30.24320 * 1 2 3 30 30 H 1.09000 * 109.47023 * 150.25311 * 1 2 3 31 31 H 1.07997 * 119.99646 * 179.71103 * 4 3 2 32 32 H 1.08001 * 119.99572 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.46791 * 329.99779 * 8 7 6 34 34 H 1.09001 * 109.47037 * 210.00199 * 8 7 6 35 35 H 1.09003 * 109.47042 * 60.00398 * 9 8 7 36 36 H 1.09001 * 109.47661 * 300.00282 * 9 8 7 37 37 H 0.97002 * 120.00221 * 343.23716 * 10 9 8 38 38 H 1.07991 * 119.87704 * 0.02562 * 15 14 11 39 39 H 1.07999 * 119.74311 * 179.69435 * 16 15 14 40 40 H 1.08001 * 119.87747 * 180.02562 * 17 16 15 41 41 H 1.08001 * 120.13022 * 180.02562 * 18 17 16 42 42 H 0.97000 * 120.00202 * 355.03442 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1446 0.0000 4 6 3.4890 1.1446 -0.0055 5 6 4.1809 -0.0539 -0.0056 6 7 3.5203 -1.1982 -0.0007 7 6 2.1987 -1.1981 0.0048 8 6 1.4451 -2.5032 0.0098 9 6 1.1963 -2.9428 1.4539 10 7 0.4643 -4.2118 1.4588 11 16 0.4144 -5.1337 2.8336 12 8 1.7485 -5.2048 3.3176 13 8 -0.3600 -6.2826 2.5184 14 6 -0.5033 -4.2290 4.0353 15 6 -1.7393 -4.6777 4.4422 16 6 -2.4662 -3.9644 5.3826 17 6 -1.9558 -2.7966 5.9286 18 6 -0.7194 -2.3331 5.5419 19 6 0.0272 -3.0486 4.5873 20 6 1.2989 -2.5817 4.1819 21 1 2.0419 -3.2797 3.8251 22 6 1.5948 -1.2153 4.2432 23 7 0.6263 -0.3360 4.2511 24 14 3.3729 -0.6471 4.3138 25 1 3.4165 0.8361 4.3734 26 1 4.0248 -1.2100 5.5235 27 1 4.0908 -1.1156 3.1011 28 1 -0.3633 0.0044 1.0277 29 1 -0.3633 0.8877 -0.5176 30 1 -0.3633 -0.8922 -0.5099 31 1 4.0289 2.0799 -0.0103 32 1 5.2609 -0.0539 -0.0106 33 1 2.0321 -3.2635 -0.5054 34 1 0.4906 -2.3735 -0.5002 35 1 0.6093 -2.1824 1.9692 36 1 2.1508 -3.0725 1.9640 37 1 0.0087 -4.5120 0.6568 38 1 -2.1462 -5.5864 4.0239 39 1 -3.4373 -4.3213 5.6924 40 1 -2.5306 -2.2490 6.6608 41 1 -0.3235 -1.4234 5.9688 42 1 -0.2929 -0.6259 4.1420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601421572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:51 Heat of formation + Delta-G solvation = -40.754344 kcal Electronic energy + Delta-G solvation = -29424.817448 eV Core-core repulsion = 25495.290109 eV Total energy + Delta-G solvation = -3929.527339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.11893 -39.70342 -38.22847 -37.27513 -36.73652 -35.89752 -35.42867 -34.31689 -32.00962 -31.23047 -30.33449 -28.81320 -27.30946 -25.38791 -23.88399 -23.64775 -22.98602 -22.75709 -20.47495 -19.97057 -18.84734 -18.67316 -17.90758 -17.36757 -17.11750 -16.64037 -16.47120 -16.21098 -15.88889 -15.79818 -15.53894 -15.40002 -14.97183 -14.44579 -14.34977 -14.05769 -13.84848 -13.62687 -13.58439 -13.31616 -13.10835 -13.04394 -12.97970 -12.83739 -12.79550 -12.60876 -12.54213 -12.29308 -12.17142 -12.14963 -11.81045 -11.56497 -11.12984 -11.06718 -10.28594 -10.03165 -9.97942 -9.92049 -9.62757 -9.29696 -6.70780 -0.27715 -0.10822 0.21153 0.42771 0.85437 1.35588 1.46905 1.61607 2.12612 2.28900 2.53010 2.73310 2.91382 3.16316 3.26936 3.36182 3.55937 3.68002 3.80194 4.06094 4.13498 4.23872 4.29223 4.34069 4.40556 4.47143 4.62555 4.63565 4.71617 4.78169 4.81446 4.83321 5.04350 5.09768 5.11449 5.27738 5.35502 5.49971 5.52885 5.60435 5.77275 5.86463 5.97879 6.16526 6.29399 6.38830 6.56497 6.74320 6.87916 7.90829 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.005258 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.784113 B = 5323.523970 C = 6103.559982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.079 3.921 3 N -0.461 5.461 4 C 0.046 3.954 5 C 0.036 3.964 6 N -0.455 5.455 7 C 0.072 3.928 8 C -0.076 4.076 9 C 0.141 3.859 10 N -1.104 6.104 11 S 2.724 3.276 12 O -1.002 7.002 13 O -1.006 7.006 14 C -0.797 4.797 15 C 0.000 4.000 16 C -0.260 4.260 17 C -0.053 4.053 18 C -0.236 4.236 19 C 0.148 3.852 20 C -0.537 4.537 21 H 0.106 0.894 22 C 0.032 3.968 23 N -0.783 5.783 24 Si 1.063 2.937 25 H -0.265 1.265 26 H -0.264 1.264 27 H -0.255 1.255 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.204 0.796 32 H 0.201 0.799 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.425 0.575 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 4.125 -9.798 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.060 4.060 3 N -0.176 5.176 4 C -0.114 4.114 5 C -0.124 4.124 6 N -0.169 5.169 7 C -0.069 4.069 8 C -0.116 4.116 9 C 0.014 3.986 10 N -0.864 5.864 11 S 2.821 3.179 12 O -0.992 6.992 13 O -0.997 6.997 14 C -0.891 4.891 15 C -0.019 4.019 16 C -0.280 4.280 17 C -0.072 4.072 18 C -0.256 4.256 19 C 0.143 3.857 20 C -0.564 4.564 21 H 0.124 0.876 22 C -0.191 4.191 23 N -0.404 5.404 24 Si 0.882 3.118 25 H -0.189 1.189 26 H -0.188 1.188 27 H -0.179 1.179 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.220 0.780 32 H 0.218 0.782 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.261 0.739 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.119 0.881 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.067 4.730 -9.441 10.996 hybrid contribution -1.496 -0.781 0.403 1.735 sum 1.570 3.949 -9.038 9.987 Atomic orbital electron populations 1.20841 0.86906 1.05014 1.03449 1.22325 0.99298 0.88956 0.95456 1.68320 1.10177 1.29370 1.09745 1.24358 0.90390 1.01304 0.95329 1.24325 1.03420 0.88281 0.96368 1.68253 1.08547 1.31346 1.08790 1.21951 0.90827 0.96497 0.97601 1.20860 1.01280 0.92589 0.96854 1.21364 0.96214 0.84456 0.96546 1.55093 1.67619 1.35154 1.28580 1.00190 0.72820 0.71902 0.73035 1.93438 1.38274 1.86650 1.80869 1.93432 1.72646 1.48722 1.84884 1.30061 1.12391 1.18781 1.27898 1.20643 0.91311 0.96600 0.93388 1.20887 1.02235 0.99208 1.05634 1.21197 0.94436 0.95001 0.96542 1.21411 0.97917 1.03420 1.02812 1.17266 0.91484 0.89078 0.87871 1.21536 0.99109 0.97058 1.38687 0.87627 1.27604 1.08414 0.92735 0.90360 1.70553 1.03768 1.38680 1.27424 0.83689 0.70824 0.77305 0.79965 1.18919 1.18826 1.17915 0.91089 0.89422 0.87945 0.77963 0.78211 0.88322 0.86340 0.91680 0.92022 0.73914 0.85670 0.85243 0.85705 0.88082 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.62 9.79 71.24 0.70 -1.92 16 2 C 0.08 2.34 6.79 42.53 0.29 2.63 16 3 N -0.46 -13.56 10.42 -183.29 -1.91 -15.47 16 4 C 0.05 1.09 11.23 84.68 0.95 2.05 16 5 C 0.04 0.88 11.23 84.68 0.95 1.83 16 6 N -0.45 -13.87 10.42 -183.29 -1.91 -15.78 16 7 C 0.07 2.17 6.04 42.53 0.26 2.43 16 8 C -0.08 -2.06 5.27 29.85 0.16 -1.91 16 9 C 0.14 4.96 4.42 86.38 0.38 5.34 16 10 N -1.10 -37.02 5.99 -187.50 -1.12 -38.14 16 11 S 2.72 115.06 5.44 -56.49 -0.31 114.75 16 12 O -1.00 -48.79 14.90 -128.00 -1.91 -50.70 16 13 O -1.01 -43.46 16.97 -128.00 -2.17 -45.63 16 14 C -0.80 -36.51 5.97 22.73 0.14 -36.37 16 15 C 0.00 0.01 9.54 22.22 0.21 0.22 16 16 C -0.26 -10.31 10.05 22.46 0.23 -10.09 16 17 C -0.05 -2.19 10.02 22.22 0.22 -1.97 16 18 C -0.24 -11.07 7.85 22.73 0.18 -10.90 16 19 C 0.15 7.21 5.28 -21.29 -0.11 7.10 16 20 C -0.54 -26.13 4.81 23.46 0.11 -26.02 16 21 H 0.11 5.38 4.00 -2.91 -0.01 5.37 16 22 C 0.03 1.46 4.60 85.26 0.39 1.85 16 23 N -0.78 -36.79 12.37 21.82 0.27 -36.52 16 24 Si 1.06 42.16 29.99 68.60 2.06 44.21 16 25 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 26 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 27 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 28 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.10 2.00 5.95 -2.39 -0.01 1.99 16 31 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.20 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.12 2.41 5.94 -2.39 -0.01 2.40 16 35 H 0.06 2.54 6.45 -2.39 -0.02 2.52 16 36 H 0.06 2.53 6.04 -2.39 -0.01 2.51 16 37 H 0.42 10.85 8.67 -96.74 -0.84 10.01 16 38 H 0.13 4.83 7.33 -2.92 -0.02 4.81 16 39 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 40 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.10 4.88 6.47 -2.91 -0.02 4.86 16 42 H 0.30 14.17 6.40 -92.71 -0.59 13.57 16 Total: -1.00 -66.33 354.58 -1.53 -67.85 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: 0.43 Total: 41.16 kcal Atomic # 6 Polarization: -70.78 SS G_CDS: 5.05 Total: -65.73 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -4.67 Total: -105.91 kcal Atomic # 8 Polarization: -92.25 SS G_CDS: -4.08 Total: -96.33 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.06 Total: 44.21 kcal Atomic # 16 Polarization: 115.06 SS G_CDS: -0.31 Total: 114.75 kcal Total: -66.33 -1.53 -67.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.099 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds