Wall clock time and date at job start Wed Apr 1 2020 04:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99738 * 2 1 4 4 H 1.48499 * 109.47207 * 240.00343 * 3 2 1 5 5 H 1.48504 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47278 * 120.00224 * 3 2 1 7 7 C 1.37871 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00412 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99653 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46986 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99826 * 169.99529 * 10 9 7 12 12 C 1.53238 * 109.34037 * 187.25634 * 11 10 9 13 13 N 1.47081 * 108.52057 * 306.17464 * 12 11 10 14 14 C 1.34777 * 120.88388 * 231.18870 * 13 12 11 15 15 O 1.21628 * 120.00440 * 180.96233 * 14 13 12 16 16 C 1.47276 * 119.99839 * 0.96222 * 14 13 12 17 17 C 1.35079 * 122.43227 * 171.52480 * 16 14 13 18 18 S 1.71006 * 109.14508 * 179.77001 * 17 16 14 19 19 C 1.76002 * 90.58900 * 0.31419 * 18 17 16 20 20 C 1.47873 * 125.31327 * 179.97438 * 19 18 17 21 21 C 1.46850 * 127.14930 * 0.02562 * 20 19 18 22 22 C 1.34307 * 106.01070 * 180.15033 * 21 20 19 23 23 O 1.34167 * 109.04994 * 359.60985 * 22 21 20 24 24 C 1.34006 * 110.80540 * 0.25839 * 23 22 21 25 25 N 1.29868 * 109.36440 * 359.67957 * 19 18 17 26 26 C 1.47077 * 118.23720 * 51.45482 * 13 12 11 27 27 C 1.46895 * 111.00357 * 294.30399 * 10 9 7 28 28 H 0.96999 * 120.00183 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46760 * 60.00184 * 9 7 2 30 30 H 1.08995 * 109.46815 * 300.00137 * 9 7 2 31 31 H 1.09002 * 109.48871 * 67.29883 * 11 10 9 32 32 H 1.08994 * 109.49438 * 307.21916 * 11 10 9 33 33 H 1.09003 * 109.63086 * 186.46856 * 12 11 10 34 34 H 1.09000 * 109.62889 * 65.87972 * 12 11 10 35 35 H 1.08003 * 125.42654 * 0.02562 * 17 16 14 36 36 H 1.08003 * 126.99651 * 0.02651 * 21 20 19 37 37 H 1.07998 * 125.47248 * 179.86477 * 22 21 20 38 38 H 1.08002 * 125.78713 * 180.02562 * 24 23 22 39 39 H 1.09004 * 109.62764 * 68.25341 * 26 13 12 40 40 H 1.09008 * 109.62964 * 188.83153 * 26 13 12 41 41 H 1.09004 * 109.48868 * 292.70676 * 27 10 9 42 42 H 1.08996 * 109.49291 * 52.78610 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0018 11 6 1.5216 -4.8935 0.2364 12 6 2.5643 -6.0032 0.4080 13 7 3.4613 -5.9857 -0.7575 14 6 3.7111 -7.1115 -1.4551 15 8 4.4692 -7.0823 -2.4058 16 6 3.0661 -8.3772 -1.0663 17 6 3.1463 -9.4934 -1.8228 18 16 2.2858 -10.7552 -1.0536 19 6 1.8507 -9.6773 0.2680 20 6 1.0349 -10.0517 1.4431 21 6 0.4431 -11.3647 1.7299 22 6 -0.2085 -11.2305 2.8966 23 8 -0.0587 -9.9731 3.3398 24 6 0.6811 -9.2524 2.4858 25 7 2.3634 -8.5036 0.0530 26 6 4.0831 -4.7083 -1.1380 27 6 2.9760 -3.6484 -1.2522 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5566 -0.8903 30 1 0.6248 -2.5570 0.8896 31 1 0.8794 -5.1261 -0.6130 32 1 0.9171 -4.8195 1.1404 33 1 2.0638 -6.9696 0.4703 34 1 3.1407 -5.8269 1.3162 35 1 3.6736 -9.5768 -2.7617 36 1 0.5153 -12.2563 1.1247 37 1 -0.7605 -12.0107 3.3995 38 1 0.9509 -8.2135 2.6052 39 1 4.8026 -4.4099 -0.3754 40 1 4.5872 -4.8181 -2.0982 41 1 2.3134 -3.8983 -2.0809 42 1 3.4262 -2.6715 -1.4278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:15 Heat of formation + Delta-G solvation = 58.375424 kcal Electronic energy + Delta-G solvation = -27507.424100 eV Core-core repulsion = 23582.195351 eV Total energy + Delta-G solvation = -3925.228750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.81525 -40.81150 -38.83935 -37.40407 -34.36090 -33.84543 -32.36243 -31.12755 -30.70421 -29.46549 -28.36611 -26.29422 -25.46621 -23.80117 -22.78214 -22.11610 -21.84385 -20.61806 -19.78934 -19.25731 -18.28273 -17.94861 -16.49455 -16.41845 -16.13657 -16.02122 -15.59859 -15.41955 -14.72674 -14.55948 -14.34216 -14.21012 -13.79427 -13.68659 -13.55137 -13.47405 -13.31668 -12.79043 -12.65156 -12.38880 -12.10191 -11.88947 -11.26777 -11.12688 -10.85429 -10.82824 -10.69686 -10.64394 -10.50390 -10.12397 -9.93846 -9.90523 -9.45525 -9.38111 -9.03382 -8.62790 -8.45360 -8.33018 -7.26052 -6.03399 -4.05174 0.01808 0.82922 1.25979 1.29171 1.61561 2.43723 2.62654 3.14086 3.32554 3.33761 3.37633 3.40620 3.53132 4.34838 4.36121 4.42720 4.64422 4.82021 4.94298 4.97642 5.06518 5.25748 5.32075 5.40539 5.49761 5.60067 5.66339 5.74518 5.81631 5.84845 5.92159 6.02827 6.33254 6.45408 6.51762 6.59675 6.63011 6.82354 7.09726 7.27220 7.33103 7.59363 7.78447 8.06002 8.16797 8.21942 8.52643 9.01989 9.59243 11.07397 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.002725 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.606413 B =10273.986886 C =12001.850173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.537 5.537 11 C 0.042 3.958 12 C 0.067 3.933 13 N -0.584 5.584 14 C 0.585 3.415 15 O -0.547 6.547 16 C 0.027 3.973 17 C -0.221 4.221 18 S 0.181 5.819 19 C 0.130 3.870 20 C -0.144 4.144 21 C -0.198 4.198 22 C -0.027 4.027 23 O -0.173 6.173 24 C 0.044 3.956 25 N -0.434 5.434 26 C 0.113 3.887 27 C 0.053 3.947 28 H 0.262 0.738 29 H -0.010 1.010 30 H 0.031 0.969 31 H 0.022 0.978 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.068 0.932 35 H 0.192 0.808 36 H 0.156 0.844 37 H 0.209 0.791 38 H 0.219 0.781 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.024 0.976 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 -27.456 3.185 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.262 5.262 11 C -0.087 4.087 12 C -0.056 4.056 13 N -0.314 5.314 14 C 0.370 3.630 15 O -0.425 6.425 16 C -0.108 4.108 17 C -0.362 4.362 18 S 0.440 5.560 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.219 4.219 22 C -0.093 4.093 23 O -0.068 6.068 24 C -0.029 4.029 25 N -0.150 5.150 26 C -0.009 4.009 27 C -0.076 4.076 28 H 0.071 0.929 29 H 0.008 0.992 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.086 0.914 35 H 0.209 0.791 36 H 0.174 0.826 37 H 0.225 0.775 38 H 0.235 0.765 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.042 0.958 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.963 -27.768 3.397 27.991 hybrid contribution 0.265 1.717 -1.164 2.091 sum 1.227 -26.051 2.232 26.175 Atomic orbital electron populations 1.69946 1.06085 1.26917 1.50871 1.24986 0.94860 0.99323 0.95383 0.86558 0.79437 0.82717 0.78680 1.20257 1.21376 1.20129 1.21120 0.93460 0.89929 1.50275 0.91862 1.19711 0.90017 0.87275 0.96086 1.62104 1.28022 1.02807 1.33257 1.22416 0.95158 0.90724 1.00442 1.23330 0.92127 1.03328 0.86824 1.48047 1.45693 1.07841 1.29821 1.17161 0.81220 0.82130 0.82484 1.90783 1.37614 1.85315 1.28829 1.20199 1.02192 0.96422 0.91967 1.26434 1.06573 0.96287 1.06949 1.83761 1.44021 1.13800 1.14375 1.25119 1.00687 0.91083 0.97582 1.19023 1.05817 0.95039 0.94981 1.22747 1.02904 0.97196 0.99004 1.23929 1.03575 0.85248 0.96550 1.83957 1.56553 1.21501 1.44788 1.24476 0.93055 0.97645 0.87772 1.66878 1.11349 1.18689 1.18058 1.22040 0.95941 0.81523 1.01414 1.22396 0.95055 0.98973 0.91192 0.92853 0.99242 0.95086 0.96003 0.90335 0.83512 0.91410 0.79130 0.82609 0.77458 0.76490 0.90677 0.89408 0.95822 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.24 8.41 -34.44 -0.29 -14.53 16 8 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 9 C 0.19 5.06 4.72 -4.97 -0.02 5.04 16 10 N -0.54 -11.65 4.62 -235.47 -1.09 -12.74 16 11 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 12 C 0.07 1.05 6.31 -3.60 -0.02 1.02 16 13 N -0.58 -9.88 3.00 -173.50 -0.52 -10.40 16 14 C 0.59 9.82 7.68 -12.59 -0.10 9.72 16 15 O -0.55 -10.30 16.13 5.25 0.08 -10.22 16 16 C 0.03 0.37 6.50 -84.91 -0.55 -0.18 16 17 C -0.22 -2.46 10.56 29.61 0.31 -2.14 16 18 S 0.18 1.50 23.07 -107.50 -2.48 -0.98 16 19 C 0.13 1.34 7.46 -14.44 -0.11 1.23 16 20 C -0.14 -1.26 6.32 -103.25 -0.65 -1.92 16 21 C -0.20 -1.28 11.04 -37.49 -0.41 -1.69 16 22 C -0.03 -0.15 12.04 29.35 0.35 0.21 16 23 O -0.17 -1.34 10.54 6.87 0.07 -1.27 16 24 C 0.04 0.36 12.05 29.95 0.36 0.72 16 25 N -0.43 -5.41 6.56 -8.11 -0.05 -5.47 16 26 C 0.11 1.98 6.63 -3.37 -0.02 1.95 16 27 C 0.05 1.07 5.47 -3.47 -0.02 1.05 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 30 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 1.36 7.99 -51.93 -0.41 0.94 16 33 H 0.15 2.07 3.72 -89.54 -0.33 1.74 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.19 1.92 8.01 -52.48 -0.42 1.50 16 36 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.21 0.33 8.06 -52.49 -0.42 -0.09 16 38 H 0.22 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.50 7.06 -51.92 -0.37 1.14 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 2.05 6.67 -51.93 -0.35 1.71 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -33.83 366.05 -9.23 -43.06 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.19 Total: -0.87 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -1.29 Total: 2.72 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.93 Total: -54.59 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.16 Total: -11.48 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.48 Total: -0.98 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.83 -9.23 -43.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.438 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds