Wall clock time and date at job start Wed Apr 1 2020 04:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99738 * 2 1 4 4 H 1.48499 * 109.47207 * 240.00343 * 3 2 1 5 5 H 1.48504 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47278 * 120.00224 * 3 2 1 7 7 C 1.37871 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00412 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99653 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46986 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99826 * 169.99529 * 10 9 7 12 12 C 1.53238 * 109.34037 * 187.25634 * 11 10 9 13 13 N 1.47081 * 108.52057 * 306.17464 * 12 11 10 14 14 C 1.34777 * 120.88388 * 231.18870 * 13 12 11 15 15 O 1.21628 * 120.00440 * 180.96233 * 14 13 12 16 16 C 1.47276 * 119.99839 * 0.96222 * 14 13 12 17 17 C 1.35079 * 122.43227 * 171.52480 * 16 14 13 18 18 S 1.71006 * 109.14508 * 179.77001 * 17 16 14 19 19 C 1.76002 * 90.58900 * 0.31419 * 18 17 16 20 20 C 1.47873 * 125.31327 * 179.97438 * 19 18 17 21 21 C 1.46850 * 127.14930 * 0.02562 * 20 19 18 22 22 C 1.34307 * 106.01070 * 180.15033 * 21 20 19 23 23 O 1.34167 * 109.04994 * 359.60985 * 22 21 20 24 24 C 1.34006 * 110.80540 * 0.25839 * 23 22 21 25 25 N 1.29868 * 109.36440 * 359.67957 * 19 18 17 26 26 C 1.47077 * 118.23720 * 51.45482 * 13 12 11 27 27 C 1.46895 * 111.00357 * 294.30399 * 10 9 7 28 28 H 0.96999 * 120.00183 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46760 * 60.00184 * 9 7 2 30 30 H 1.08995 * 109.46815 * 300.00137 * 9 7 2 31 31 H 1.09002 * 109.48871 * 67.29883 * 11 10 9 32 32 H 1.08994 * 109.49438 * 307.21916 * 11 10 9 33 33 H 1.09003 * 109.63086 * 186.46856 * 12 11 10 34 34 H 1.09000 * 109.62889 * 65.87972 * 12 11 10 35 35 H 1.08003 * 125.42654 * 0.02562 * 17 16 14 36 36 H 1.08003 * 126.99651 * 0.02651 * 21 20 19 37 37 H 1.07998 * 125.47248 * 179.86477 * 22 21 20 38 38 H 1.08002 * 125.78713 * 180.02562 * 24 23 22 39 39 H 1.09004 * 109.62764 * 68.25341 * 26 13 12 40 40 H 1.09008 * 109.62964 * 188.83153 * 26 13 12 41 41 H 1.09004 * 109.48868 * 292.70676 * 27 10 9 42 42 H 1.08996 * 109.49291 * 52.78610 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0018 11 6 1.5216 -4.8935 0.2364 12 6 2.5643 -6.0032 0.4080 13 7 3.4613 -5.9857 -0.7575 14 6 3.7111 -7.1115 -1.4551 15 8 4.4692 -7.0823 -2.4058 16 6 3.0661 -8.3772 -1.0663 17 6 3.1463 -9.4934 -1.8228 18 16 2.2858 -10.7552 -1.0536 19 6 1.8507 -9.6773 0.2680 20 6 1.0349 -10.0517 1.4431 21 6 0.4431 -11.3647 1.7299 22 6 -0.2085 -11.2305 2.8966 23 8 -0.0587 -9.9731 3.3398 24 6 0.6811 -9.2524 2.4858 25 7 2.3634 -8.5036 0.0530 26 6 4.0831 -4.7083 -1.1380 27 6 2.9760 -3.6484 -1.2522 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5566 -0.8903 30 1 0.6248 -2.5570 0.8896 31 1 0.8794 -5.1261 -0.6130 32 1 0.9171 -4.8195 1.1404 33 1 2.0638 -6.9696 0.4703 34 1 3.1407 -5.8269 1.3162 35 1 3.6736 -9.5768 -2.7617 36 1 0.5153 -12.2563 1.1247 37 1 -0.7605 -12.0107 3.3995 38 1 0.9509 -8.2135 2.6052 39 1 4.8026 -4.4099 -0.3754 40 1 4.5872 -4.8181 -2.0982 41 1 2.3134 -3.8983 -2.0809 42 1 3.4262 -2.6715 -1.4278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:15 Heat of formation + Delta-G solvation = 35.542775 kcal Electronic energy + Delta-G solvation = -27508.414198 eV Core-core repulsion = 23582.195351 eV Total energy + Delta-G solvation = -3926.218848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.33851 -41.91545 -40.03318 -38.91193 -36.03280 -34.50469 -34.36927 -32.23726 -31.75391 -30.20738 -30.05962 -27.60598 -26.92496 -25.01847 -24.22977 -23.53535 -22.61941 -21.88494 -20.74569 -20.16797 -19.40982 -18.69135 -18.49417 -17.37739 -17.23657 -17.01450 -16.72766 -16.62496 -16.22626 -15.97610 -15.50769 -15.47712 -15.26030 -15.17744 -14.74497 -14.38982 -14.22735 -14.00024 -13.79114 -13.62060 -13.23165 -13.16210 -12.98734 -12.77604 -12.57756 -12.43965 -12.35850 -12.22589 -11.79709 -11.57053 -11.41336 -11.34945 -10.66723 -10.63091 -10.19966 -10.02949 -9.81877 -9.24950 -9.08080 -8.21683 -6.32154 -0.77659 0.07860 0.42170 0.44302 1.06110 1.41200 1.44274 1.52087 1.71033 1.91272 2.14618 2.23314 2.39640 2.68308 3.10370 3.24812 3.49457 3.80823 3.88416 4.02182 4.05570 4.08726 4.17328 4.22076 4.36812 4.41343 4.46821 4.58765 4.67235 4.81380 4.85031 4.88519 4.99374 5.09550 5.13457 5.19923 5.24589 5.42437 5.57128 5.62905 6.01020 6.07004 6.15862 6.27072 6.37622 6.56125 6.82834 6.93511 7.37619 8.89393 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.002725 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.606413 B =10273.986886 C =12001.850173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.210 3.790 10 N -0.539 5.539 11 C 0.042 3.958 12 C 0.079 3.921 13 N -0.592 5.592 14 C 0.583 3.417 15 O -0.574 6.574 16 C -0.002 4.002 17 C -0.227 4.227 18 S 0.274 5.726 19 C 0.118 3.882 20 C -0.164 4.164 21 C -0.207 4.207 22 C -0.019 4.019 23 O -0.184 6.184 24 C 0.034 3.966 25 N -0.456 5.456 26 C 0.123 3.877 27 C 0.058 3.942 28 H 0.265 0.735 29 H -0.044 1.044 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.087 0.913 33 H 0.171 0.829 34 H 0.073 0.927 35 H 0.199 0.801 36 H 0.178 0.822 37 H 0.247 0.753 38 H 0.222 0.778 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.008 0.992 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 -29.849 3.878 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.264 5.264 11 C -0.086 4.086 12 C -0.044 4.044 13 N -0.322 5.322 14 C 0.370 3.630 15 O -0.455 6.455 16 C -0.136 4.136 17 C -0.370 4.370 18 S 0.535 5.465 19 C -0.156 4.156 20 C -0.169 4.169 21 C -0.227 4.227 22 C -0.085 4.085 23 O -0.079 6.079 24 C -0.040 4.040 25 N -0.172 5.172 26 C 0.001 3.999 27 C -0.071 4.071 28 H 0.074 0.926 29 H -0.026 1.026 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.105 0.895 33 H 0.186 0.814 34 H 0.091 0.909 35 H 0.216 0.784 36 H 0.195 0.805 37 H 0.262 0.738 38 H 0.238 0.762 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.027 0.973 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.332 -30.205 4.101 30.511 hybrid contribution 0.067 2.249 -1.373 2.636 sum 1.399 -27.956 2.728 28.123 Atomic orbital electron populations 1.70078 1.07765 1.28019 1.51623 1.25912 0.95733 1.03205 0.94698 0.85431 0.78152 0.77852 0.79162 1.19340 1.20865 1.19132 1.21432 0.93711 0.90932 1.50300 0.91646 1.19371 0.90011 0.88835 0.93440 1.62057 1.27192 1.03190 1.33961 1.22530 0.95979 0.89893 1.00246 1.23403 0.91345 1.03146 0.86505 1.48130 1.45990 1.07787 1.30296 1.17584 0.80739 0.82943 0.81746 1.90748 1.38893 1.85979 1.29921 1.19826 1.04374 0.95776 0.93659 1.26721 1.06224 0.96923 1.07109 1.83430 1.41240 1.10520 1.11306 1.25367 1.00193 0.91290 0.98738 1.19246 1.06387 0.96489 0.94778 1.23036 1.02972 0.96901 0.99749 1.24730 1.02653 0.84847 0.96270 1.83969 1.56460 1.22540 1.44943 1.24651 0.93232 0.98113 0.87967 1.66574 1.12252 1.20421 1.18001 1.21846 0.94814 0.81268 1.02006 1.22330 0.95299 0.99437 0.89998 0.92642 1.02591 0.97169 0.97200 0.89488 0.81397 0.90902 0.78415 0.80492 0.73752 0.76179 0.89839 0.89048 0.97342 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.44 0.28 -56.52 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.53 -30.11 8.41 25.60 0.22 -29.89 16 8 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 9 C 0.21 11.44 4.72 85.56 0.40 11.84 16 10 N -0.54 -24.23 4.62 -898.91 -4.15 -28.38 16 11 C 0.04 1.60 5.62 86.38 0.49 2.08 16 12 C 0.08 2.46 6.31 86.35 0.55 3.01 16 13 N -0.59 -20.23 3.00 -821.08 -2.47 -22.69 16 14 C 0.58 19.64 7.68 86.62 0.66 20.31 16 15 O -0.57 -21.85 16.13 -4.12 -0.07 -21.91 16 16 C 0.00 -0.05 6.50 40.65 0.26 0.22 16 17 C -0.23 -4.70 10.56 67.09 0.71 -3.99 16 18 S 0.27 3.76 23.07 -56.49 -1.30 2.46 16 19 C 0.12 2.22 7.46 87.54 0.65 2.88 16 20 C -0.16 -2.59 6.32 -18.98 -0.12 -2.71 16 21 C -0.21 -2.06 11.04 23.63 0.26 -1.79 16 22 C -0.02 -0.16 12.04 66.92 0.81 0.65 16 23 O -0.18 -2.53 10.54 1.66 0.02 -2.52 16 24 C 0.03 0.53 12.05 67.31 0.81 1.34 16 25 N -0.46 -10.98 6.56 -179.56 -1.18 -12.16 16 26 C 0.12 4.38 6.63 86.50 0.57 4.96 16 27 C 0.06 2.45 5.47 86.54 0.47 2.92 16 28 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 29 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16 30 H 0.01 0.59 7.97 -2.39 -0.02 0.57 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 3.08 7.99 -2.39 -0.02 3.07 16 33 H 0.17 4.71 3.72 -76.64 -0.29 4.43 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.20 3.69 8.01 -2.91 -0.02 3.67 16 36 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 37 H 0.25 -0.21 8.06 -2.91 -0.02 -0.24 16 38 H 0.22 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 40 H 0.09 3.19 7.06 -2.38 -0.02 3.17 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.08 3.69 6.67 -2.39 -0.02 3.67 16 Total: -1.00 -74.94 366.05 1.15 -73.79 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.78 Total: 8.84 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 7.21 Total: 12.43 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -7.51 Total: -119.75 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.30 Total: 2.46 kcal Total: -74.94 1.15 -73.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.331 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds